Wall clock time and date at job start Tue Mar 31 2020 13:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.34368 * 126.40872 * 2 1 4 4 C 1.34581 * 108.17153 * 179.97438 * 3 2 1 5 5 C 1.47048 * 125.52631 * 180.02562 * 4 3 2 6 6 C 1.36155 * 125.33496 * 359.97438 * 5 4 3 7 7 C 1.37714 * 114.45408 * 179.97438 * 6 5 4 8 8 C 1.33725 * 115.19058 * 0.02562 * 7 6 5 9 9 S 1.75833 * 109.95430 * 359.75795 * 8 7 6 10 10 N 1.31211 * 108.94406 * 0.02562 * 4 3 2 11 11 C 1.35859 * 108.37957 * 359.97438 * 10 4 3 12 12 C 1.47441 * 126.34201 * 179.97438 * 11 10 4 13 13 O 1.21617 * 119.99995 * 175.07500 * 12 11 10 14 14 N 1.34777 * 120.00312 * 355.07476 * 12 11 10 15 15 C 1.46499 * 119.99704 * 2.55205 * 14 12 11 16 16 C 1.46492 * 120.00210 * 182.54740 * 14 12 11 17 17 H 1.09002 * 109.47503 * 0.02562 * 16 14 12 18 18 C 1.53000 * 109.47340 * 240.00255 * 16 14 12 19 19 C 1.50703 * 109.47334 * 120.00152 * 16 14 12 20 20 H 1.08001 * 119.99519 * 34.70776 * 19 16 14 21 21 C 1.37872 * 120.00438 * 214.71150 * 19 16 14 22 22 N 1.31516 * 120.00350 * 184.47730 * 21 19 16 23 23 Si 1.86800 * 120.00162 * 4.48111 * 21 19 16 24 24 H 1.48503 * 109.47432 * 94.38600 * 23 21 19 25 25 H 1.48499 * 109.47453 * 214.38829 * 23 21 19 26 26 H 1.48501 * 109.46626 * 334.38872 * 23 21 19 27 27 H 1.09000 * 109.46814 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47065 * 119.97570 * 1 2 3 29 29 H 1.08996 * 109.47411 * 239.97991 * 1 2 3 30 30 H 1.08006 * 122.77637 * 359.97438 * 6 5 4 31 31 H 1.08000 * 122.40945 * 180.02562 * 7 6 5 32 32 H 1.07999 * 125.02328 * 179.97438 * 8 7 6 33 33 H 1.08995 * 109.47218 * 83.86425 * 15 14 12 34 34 H 1.08997 * 109.46990 * 203.86477 * 15 14 12 35 35 H 1.09002 * 109.47479 * 323.86155 * 15 14 12 36 36 H 1.09000 * 109.46995 * 54.96014 * 18 16 14 37 37 H 1.09002 * 109.47022 * 174.95929 * 18 16 14 38 38 H 1.08995 * 109.47284 * 294.95643 * 18 16 14 39 39 H 0.96993 * 120.00248 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3046 1.0814 0.0000 4 6 3.5828 0.6602 0.0006 5 6 4.7688 1.5295 0.0013 6 6 4.7474 2.8908 0.0010 7 6 5.9919 3.4806 0.0024 8 6 7.0244 2.6308 0.0033 9 16 6.4375 0.9734 0.0093 10 7 3.5990 -0.6518 0.0004 11 6 2.3151 -1.0960 0.0002 12 6 1.8777 -2.5041 -0.0005 13 8 0.6952 -2.7736 0.0898 14 7 2.7883 -3.4926 -0.1014 15 6 4.2164 -3.1703 -0.1539 16 6 2.3500 -4.8892 -0.1584 17 1 1.2620 -4.9311 -0.1073 18 6 2.9464 -5.6595 1.0214 19 6 2.8159 -5.5097 -1.4504 20 1 3.7635 -5.2180 -1.8785 21 6 2.0324 -6.4495 -2.0858 22 7 2.4771 -7.0553 -3.1651 23 14 0.3391 -6.8624 -1.4137 24 1 -0.6835 -6.0395 -2.1084 25 1 0.0538 -8.3020 -1.6410 26 1 0.3007 -6.5740 0.0425 27 1 -0.3633 1.0277 0.0005 28 1 -0.3633 -0.5134 -0.8902 29 1 -0.3634 -0.5141 0.8898 30 1 3.8302 3.4612 -0.0002 31 1 6.1245 4.5524 0.0028 32 1 8.0650 2.9199 0.0040 33 1 4.5972 -3.0409 0.8591 34 1 4.7543 -3.9822 -0.6433 35 1 4.3603 -2.2480 -0.7168 36 1 2.6830 -5.1584 1.9529 37 1 2.5498 -6.6748 1.0302 38 1 4.0312 -5.6942 0.9216 39 1 1.9257 -7.7162 -3.6123 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728874172.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:48 Heat of formation + Delta-G solvation = 14.061316 kcal Electronic energy + Delta-G solvation = -24359.369458 eV Core-core repulsion = 20781.408775 eV Total energy + Delta-G solvation = -3577.960683 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.52888 -40.70491 -38.65819 -37.30100 -36.15349 -34.63316 -33.84496 -32.19834 -31.02822 -28.22303 -27.59368 -27.28954 -25.64033 -24.64105 -23.31970 -22.21716 -20.96076 -19.66203 -19.26327 -18.97444 -18.22263 -18.04495 -17.35951 -16.74273 -16.38313 -16.23818 -15.88033 -15.01523 -14.94090 -14.63980 -14.40106 -14.39753 -14.21096 -13.97464 -13.76890 -13.74397 -13.64563 -13.29391 -13.17579 -13.06525 -12.97249 -12.71461 -12.54739 -12.32711 -11.85348 -11.74625 -11.56413 -11.26190 -10.95966 -10.79453 -10.71712 -9.54294 -9.50414 -9.15432 -8.37946 -6.43536 -0.67477 0.11150 0.24280 0.99655 1.03956 1.28032 1.33779 1.43909 1.47537 1.82594 2.05409 2.25707 2.27876 2.63708 3.02728 3.47412 3.58746 4.05425 4.17183 4.19677 4.36839 4.44268 4.50176 4.54926 4.56574 4.63863 4.64924 4.71963 4.79244 4.81574 5.03504 5.04253 5.08672 5.19121 5.25943 5.31304 5.40904 5.49748 5.74878 6.08084 6.28192 6.60738 6.62836 7.11607 7.25976 8.77535 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.018722 B = 0.003648 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.183740 B = 7673.480419 C = 8610.103937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.049 3.951 3 O -0.182 6.182 4 C 0.260 3.740 5 C -0.178 4.178 6 C -0.077 4.077 7 C -0.144 4.144 8 C -0.188 4.188 9 S 0.181 5.819 10 N -0.459 5.459 11 C -0.087 4.087 12 C 0.580 3.420 13 O -0.577 6.577 14 N -0.579 5.579 15 C 0.091 3.909 16 C 0.221 3.779 17 H 0.051 0.949 18 C -0.138 4.138 19 C -0.524 4.524 20 H 0.048 0.952 21 C 0.028 3.972 22 N -0.934 5.934 23 Si 0.929 3.071 24 H -0.280 1.280 25 H -0.273 1.273 26 H -0.246 1.246 27 H 0.113 0.887 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.161 0.839 31 H 0.181 0.819 32 H 0.205 0.795 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.045 0.955 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.256 24.280 9.065 26.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.008 4.008 3 O -0.069 6.069 4 C 0.054 3.946 5 C -0.296 4.296 6 C -0.113 4.113 7 C -0.173 4.173 8 C -0.326 4.326 9 S 0.446 5.554 10 N -0.189 5.189 11 C -0.207 4.207 12 C 0.368 3.632 13 O -0.459 6.459 14 N -0.308 5.308 15 C -0.052 4.052 16 C 0.120 3.880 17 H 0.069 0.931 18 C -0.196 4.196 19 C -0.562 4.562 20 H 0.066 0.934 21 C -0.171 4.171 22 N -0.573 5.573 23 Si 0.754 3.246 24 H -0.206 1.206 25 H -0.198 1.198 26 H -0.170 1.170 27 H 0.132 0.868 28 H 0.111 0.889 29 H 0.119 0.881 30 H 0.179 0.821 31 H 0.198 0.802 32 H 0.222 0.778 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.909 22.130 8.987 24.864 hybrid contribution -1.829 0.890 -0.318 2.059 sum 5.080 23.019 8.669 25.116 Atomic orbital electron populations 1.20579 0.80105 1.05760 1.05376 1.24221 0.96093 0.82295 0.98200 1.84388 1.17011 1.35379 1.70149 1.22880 0.82452 0.88371 1.00924 1.21563 0.92904 0.95353 1.19792 1.21028 1.01383 0.90859 0.98029 1.20308 0.89835 1.03100 1.04084 1.26561 1.05443 0.94494 1.06063 1.84782 0.93309 1.07772 1.69512 1.71336 1.21100 1.07976 1.18514 1.21444 0.89513 0.95319 1.14472 1.17167 0.85359 0.83410 0.77284 1.90689 1.17171 1.83818 1.54225 1.48136 1.07665 1.06799 1.68156 1.21955 0.79602 1.01886 1.01765 1.19302 0.96434 0.77603 0.94693 0.93061 1.22067 1.01414 0.99718 0.96441 1.21312 1.05805 1.22333 1.06784 0.93418 1.25681 1.01378 0.95421 0.94658 1.70000 1.39095 1.27553 1.20626 0.85998 0.80406 0.77672 0.80573 1.20553 1.19805 1.17014 0.86804 0.88862 0.88094 0.82121 0.80184 0.77844 0.92275 0.92163 0.89176 0.93583 0.92452 0.92379 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.47 9.13 71.24 0.65 -0.82 16 2 C 0.05 1.52 7.43 25.20 0.19 1.71 16 3 O -0.18 -5.09 10.73 -5.84 -0.06 -5.15 16 4 C 0.26 7.64 8.06 87.10 0.70 8.35 16 5 C -0.18 -4.03 6.46 24.10 0.16 -3.88 16 6 C -0.08 -1.23 10.14 21.66 0.22 -1.01 16 7 C -0.14 -1.55 10.15 21.12 0.21 -1.33 16 8 C -0.19 -2.08 11.21 66.79 0.75 -1.33 16 9 S 0.18 3.44 23.30 -56.49 -1.32 2.12 16 10 N -0.46 -16.01 7.87 -294.56 -2.32 -18.33 16 11 C -0.09 -3.30 6.67 40.46 0.27 -3.03 16 12 C 0.58 26.15 7.67 86.67 0.66 26.82 16 13 O -0.58 -27.88 14.91 -4.08 -0.06 -27.94 16 14 N -0.58 -26.84 2.75 -830.67 -2.29 -29.13 16 15 C 0.09 3.64 8.68 127.77 1.11 4.75 16 16 C 0.22 11.15 2.25 44.25 0.10 11.25 16 17 H 0.05 2.76 3.87 -2.39 -0.01 2.75 16 18 C -0.14 -5.96 9.10 71.98 0.65 -5.31 16 19 C -0.52 -30.34 8.69 25.60 0.22 -30.11 16 20 H 0.05 3.00 6.92 -2.91 -0.02 2.98 16 21 C 0.03 1.67 5.47 84.65 0.46 2.13 16 22 N -0.93 -58.11 13.96 21.45 0.30 -57.82 16 23 Si 0.93 46.23 27.28 68.60 1.87 48.10 16 24 H -0.28 -14.10 7.11 99.48 0.71 -13.39 16 25 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 26 H -0.25 -11.66 6.41 99.48 0.64 -11.03 16 27 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.09 2.41 8.13 -2.39 -0.02 2.39 16 29 H 0.10 2.45 8.00 -2.39 -0.02 2.43 16 30 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 31 H 0.18 0.75 8.06 -2.91 -0.02 0.72 16 32 H 0.20 0.87 8.06 -2.91 -0.02 0.84 16 33 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.06 2.54 6.64 -2.39 -0.02 2.53 16 35 H 0.09 3.56 5.34 -2.39 -0.01 3.55 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.06 2.39 7.84 -2.39 -0.02 2.37 16 39 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -74.51 344.29 3.50 -71.00 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 1.02 Total: 8.96 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 6.36 Total: 8.18 kcal Atomic # 7 Polarization: -100.96 SS G_CDS: -4.31 Total: -105.27 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -0.12 Total: -33.10 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.87 Total: 48.10 kcal Atomic # 16 Polarization: 3.44 SS G_CDS: -1.32 Total: 2.12 kcal Total: -74.51 3.50 -71.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728874172.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.064 kcal (2) G-P(sol) polarization free energy of solvation -74.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds