Wall clock time and date at job start Tue Mar 31 2020 12:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86800 * 120.00114 * 2 1 4 4 H 1.48502 * 109.47092 * 274.65576 * 3 2 1 5 5 H 1.48501 * 109.47092 * 34.65371 * 3 2 1 6 6 H 1.48497 * 109.47284 * 154.65639 * 3 2 1 7 7 C 1.39886 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99726 * 162.15528 * 7 2 1 9 9 C 1.41223 * 120.00282 * 342.15824 * 7 2 1 10 10 C 1.40829 * 120.18048 * 155.13982 * 9 7 2 11 11 C 1.36438 * 119.81200 * 180.02562 * 10 9 7 12 12 C 1.39305 * 120.18360 * 0.27972 * 11 10 9 13 13 O 1.35678 * 119.81904 * 179.71525 * 12 11 10 14 14 C 1.42895 * 116.99997 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.46981 * 180.02562 * 14 13 12 16 16 H 1.08998 * 109.47058 * 304.99921 * 15 14 13 17 17 O 1.42900 * 109.47081 * 65.00193 * 15 14 13 18 18 C 1.50703 * 109.47163 * 185.00010 * 15 14 13 19 19 C 1.38418 * 120.02463 * 284.71893 * 18 15 14 20 20 F 1.35103 * 120.01186 * 0.02562 * 19 18 15 21 21 C 1.38475 * 119.97249 * 179.79143 * 19 18 15 22 22 C 1.38205 * 120.02363 * 0.48587 * 21 19 18 23 23 C 1.38204 * 120.05311 * 359.75243 * 22 21 19 24 24 C 1.38419 * 120.02591 * 105.00124 * 18 15 14 25 25 F 1.35102 * 120.00855 * 359.97438 * 24 18 15 26 26 C 1.39321 * 120.36585 * 359.44330 * 12 11 10 27 27 C 1.36442 * 120.18148 * 0.55238 * 26 12 11 28 28 H 0.96996 * 120.00147 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.09080 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.90878 * 179.97438 * 11 10 9 31 31 H 1.08999 * 109.47273 * 300.00291 * 14 13 12 32 32 H 1.08996 * 109.47624 * 60.00710 * 14 13 12 33 33 H 0.96699 * 114.00658 * 59.99947 * 17 15 14 34 34 H 1.08002 * 119.98401 * 180.23894 * 21 19 18 35 35 H 1.08003 * 119.97250 * 179.72165 * 22 21 19 36 36 H 1.07998 * 119.98570 * 179.97438 * 23 22 21 37 37 H 1.07998 * 119.90672 * 180.27488 * 26 12 11 38 38 H 1.07994 * 120.08996 * 179.70434 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3920 2.1032 -1.3955 5 1 1.4930 2.6223 0.7961 6 1 3.5862 1.4138 0.5993 7 6 2.0082 -1.2115 0.0005 8 1 3.0493 -1.2341 -0.2861 9 6 1.3531 -2.4049 0.3758 10 6 1.8224 -3.6475 -0.0922 11 6 1.1834 -4.7958 0.2746 12 6 0.0662 -4.7410 1.1049 13 8 -0.5671 -5.8871 1.4604 14 6 -1.7065 -5.7609 2.3134 15 6 -2.2823 -7.1484 2.6038 16 1 -2.4973 -7.6566 1.6638 17 8 -1.3330 -7.9112 3.3515 18 6 -3.5535 -7.0080 3.4010 19 6 -3.4955 -6.6885 4.7466 20 9 -2.2991 -6.5019 5.3458 21 6 -4.6643 -6.5555 5.4771 22 6 -5.8881 -6.7515 4.8655 23 6 -5.9471 -7.0753 3.5232 24 6 -4.7798 -7.2041 2.7896 25 9 -4.8376 -7.5211 1.4776 26 6 -0.4012 -3.5164 1.5769 27 6 0.2265 -2.3588 1.2196 28 1 -0.4850 0.8400 -0.0004 29 1 2.6857 -3.6913 -0.7397 30 1 1.5417 -5.7495 -0.0837 31 1 -1.4091 -5.2882 3.2494 32 1 -2.4627 -5.1491 1.8216 33 1 -1.0944 -7.5176 4.2019 34 1 -4.6194 -6.3024 6.5261 35 1 -6.7990 -6.6519 5.4371 36 1 -6.9039 -7.2286 3.0465 37 1 -1.2653 -3.4829 2.2238 38 1 -0.1399 -1.4099 1.5825 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755316071.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:10 Heat of formation + Delta-G solvation = -132.265350 kcal Electronic energy + Delta-G solvation = -25835.589686 eV Core-core repulsion = 21665.150664 eV Total energy + Delta-G solvation = -4170.439021 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.101 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.52763 -49.32655 -39.61012 -38.75148 -37.21395 -36.00188 -33.33989 -32.23499 -30.71318 -29.69299 -29.45239 -28.18974 -24.93620 -24.06116 -23.27051 -22.05999 -20.96445 -20.39271 -18.60263 -17.88110 -17.46788 -17.32069 -16.76039 -16.40254 -15.99023 -15.90282 -15.62796 -15.50936 -15.15715 -14.82040 -14.54624 -13.95647 -13.92373 -13.68913 -13.18278 -12.85621 -12.73242 -12.40207 -12.34351 -12.30653 -11.99717 -11.76417 -11.44770 -11.12740 -11.10243 -10.93736 -10.59019 -10.29294 -9.92023 -9.79704 -9.37885 -9.31758 -9.16732 -9.00776 -7.65050 -7.00949 -6.72687 -4.24815 0.50184 0.55491 2.76976 2.89941 2.97082 3.08191 3.12575 3.21814 3.44773 3.66236 3.95448 3.97945 4.16576 4.26264 4.43072 4.61015 4.63606 4.74496 5.02367 5.09538 5.32371 5.38329 5.50890 5.52816 5.62380 5.67630 5.71679 5.92789 6.10893 6.28761 6.31746 6.70858 6.89712 7.07082 7.28244 7.40101 7.51507 7.56619 7.90772 8.00544 8.15517 8.43768 8.64868 8.90558 8.99381 10.22268 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.018670 B = 0.002874 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.361277 B = 9739.636496 C =10156.877916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.088 3.912 10 C -0.196 4.196 11 C -0.110 4.110 12 C -0.011 4.011 13 O -0.316 6.316 14 C 0.045 3.955 15 C 0.154 3.846 16 H 0.124 0.876 17 O -0.544 6.544 18 C -0.186 4.186 19 C 0.138 3.862 20 F -0.125 7.125 21 C -0.161 4.161 22 C -0.060 4.060 23 C -0.162 4.162 24 C 0.145 3.855 25 F -0.123 7.123 26 C -0.174 4.174 27 C -0.134 4.134 28 H 0.279 0.721 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.375 0.625 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.092 0.908 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.182 -10.518 10.599 19.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.086 3.914 10 C -0.215 4.215 11 C -0.129 4.129 12 C -0.054 4.054 13 O -0.232 6.232 14 C -0.032 4.032 15 C 0.094 3.906 16 H 0.142 0.858 17 O -0.352 6.352 18 C -0.188 4.188 19 C 0.119 3.881 20 F -0.103 7.103 21 C -0.180 4.180 22 C -0.078 4.078 23 C -0.181 4.181 24 C 0.125 3.875 25 F -0.102 7.102 26 C -0.193 4.193 27 C -0.153 4.153 28 H 0.090 0.910 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.226 0.774 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.164 0.836 37 H 0.110 0.890 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.311 -10.933 9.989 19.912 hybrid contribution 0.265 1.463 0.398 1.539 sum -13.046 -9.470 10.388 19.178 Atomic orbital electron populations 1.69845 1.07537 1.29016 1.36268 1.25878 0.94704 1.01228 0.92368 0.86334 0.80755 0.80831 0.78992 1.19643 1.20140 1.18471 1.19470 0.98090 0.91215 1.40520 0.90470 1.17595 0.91798 0.92195 0.89841 1.20606 1.03255 0.92211 1.05463 1.19612 0.95388 0.97749 1.00167 1.18593 0.97701 0.83743 1.05348 1.85841 1.41573 1.30858 1.64937 1.23037 0.89354 0.95790 0.95021 1.20618 0.83185 0.92500 0.94307 0.85848 1.86636 1.61649 1.50732 1.36226 1.20554 0.96658 1.07155 0.94475 1.17188 0.81258 0.99867 0.89818 1.91414 1.43364 1.92336 1.83191 1.21231 0.90954 1.04198 1.01568 1.20899 0.97728 0.95557 0.93625 1.21257 0.97739 1.03997 0.95088 1.17150 0.92865 0.98766 0.78687 1.91561 1.97015 1.89726 1.31853 1.20595 1.01447 0.92992 1.04247 1.20921 0.98546 0.96383 0.99458 0.91035 0.88133 0.88400 0.92505 0.92051 0.77390 0.83616 0.83611 0.83607 0.89010 0.86157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.88 10.97 55.54 0.61 -20.28 16 2 C 0.07 1.89 5.13 -17.34 -0.09 1.81 16 3 Si 0.91 18.79 29.60 -169.99 -5.03 13.76 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.46 -12.41 9.04 -37.83 -0.34 -12.75 16 8 H 0.08 1.98 7.91 -52.48 -0.41 1.57 16 9 C 0.09 2.38 5.57 -106.80 -0.60 1.79 16 10 C -0.20 -4.92 9.74 -39.25 -0.38 -5.31 16 11 C -0.11 -2.65 9.92 -39.83 -0.40 -3.05 16 12 C -0.01 -0.26 6.71 -38.78 -0.26 -0.52 16 13 O -0.32 -6.82 10.09 -23.59 -0.24 -7.06 16 14 C 0.04 0.78 4.30 37.16 0.16 0.94 16 15 C 0.15 2.27 3.32 -27.88 -0.09 2.17 16 16 H 0.12 1.86 7.27 -51.93 -0.38 1.48 16 17 O -0.54 -8.42 13.20 -40.09 -0.53 -8.95 16 18 C -0.19 -2.25 4.98 -104.49 -0.52 -2.77 16 19 C 0.14 1.48 7.04 -39.43 -0.28 1.20 16 20 F -0.12 -1.42 14.10 2.25 0.03 -1.38 16 21 C -0.16 -1.25 10.03 -39.51 -0.40 -1.65 16 22 C -0.06 -0.38 10.04 -39.61 -0.40 -0.78 16 23 C -0.16 -1.27 10.02 -39.51 -0.40 -1.66 16 24 C 0.14 1.58 7.24 -39.43 -0.29 1.29 16 25 F -0.12 -1.49 16.27 2.25 0.04 -1.46 16 26 C -0.17 -4.20 8.97 -39.83 -0.36 -4.56 16 27 C -0.13 -3.53 8.64 -39.25 -0.34 -3.87 16 28 H 0.28 6.61 8.30 -40.82 -0.34 6.28 16 29 H 0.10 2.34 8.06 -52.48 -0.42 1.92 16 30 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 31 H 0.06 0.96 7.26 -51.93 -0.38 0.58 16 32 H 0.06 1.05 7.66 -51.93 -0.40 0.65 16 33 H 0.38 4.98 6.34 45.56 0.29 5.27 16 34 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.15 0.46 8.06 -52.48 -0.42 0.03 16 36 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.09 1.99 6.27 -52.49 -0.33 1.66 16 38 H 0.12 3.25 6.18 -52.49 -0.32 2.92 16 LS Contribution 333.71 15.07 5.03 5.03 Total: -1.00 -30.28 333.71 -8.24 -38.51 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -3.18 Total: 9.53 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: -4.97 Total: -27.71 kcal Atomic # 7 Polarization: -20.88 SS G_CDS: 0.61 Total: -20.28 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.77 Total: -16.01 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.07 Total: -2.84 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.28 -8.24 -38.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755316071.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.752 kcal (2) G-P(sol) polarization free energy of solvation -30.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds