Wall clock time and date at job start Tue Mar 31 2020 12:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86800 * 120.00114 * 2 1 4 4 H 1.48502 * 109.47092 * 274.65576 * 3 2 1 5 5 H 1.48501 * 109.47092 * 34.65371 * 3 2 1 6 6 H 1.48497 * 109.47284 * 154.65639 * 3 2 1 7 7 C 1.39886 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99726 * 162.15528 * 7 2 1 9 9 C 1.41223 * 120.00282 * 342.15824 * 7 2 1 10 10 C 1.40829 * 120.18048 * 155.13982 * 9 7 2 11 11 C 1.36438 * 119.81200 * 180.02562 * 10 9 7 12 12 C 1.39305 * 120.18360 * 0.27972 * 11 10 9 13 13 O 1.35678 * 119.81904 * 179.71525 * 12 11 10 14 14 C 1.42895 * 116.99997 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.46981 * 180.02562 * 14 13 12 16 16 H 1.08998 * 109.47058 * 304.99921 * 15 14 13 17 17 O 1.42900 * 109.47081 * 65.00193 * 15 14 13 18 18 C 1.50703 * 109.47163 * 185.00010 * 15 14 13 19 19 C 1.38418 * 120.02463 * 284.71893 * 18 15 14 20 20 F 1.35103 * 120.01186 * 0.02562 * 19 18 15 21 21 C 1.38475 * 119.97249 * 179.79143 * 19 18 15 22 22 C 1.38205 * 120.02363 * 0.48587 * 21 19 18 23 23 C 1.38204 * 120.05311 * 359.75243 * 22 21 19 24 24 C 1.38419 * 120.02591 * 105.00124 * 18 15 14 25 25 F 1.35102 * 120.00855 * 359.97438 * 24 18 15 26 26 C 1.39321 * 120.36585 * 359.44330 * 12 11 10 27 27 C 1.36442 * 120.18148 * 0.55238 * 26 12 11 28 28 H 0.96996 * 120.00147 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.09080 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.90878 * 179.97438 * 11 10 9 31 31 H 1.08999 * 109.47273 * 300.00291 * 14 13 12 32 32 H 1.08996 * 109.47624 * 60.00710 * 14 13 12 33 33 H 0.96699 * 114.00658 * 59.99947 * 17 15 14 34 34 H 1.08002 * 119.98401 * 180.23894 * 21 19 18 35 35 H 1.08003 * 119.97250 * 179.72165 * 22 21 19 36 36 H 1.07998 * 119.98570 * 179.97438 * 23 22 21 37 37 H 1.07998 * 119.90672 * 180.27488 * 26 12 11 38 38 H 1.07994 * 120.08996 * 179.70434 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3920 2.1032 -1.3955 5 1 1.4930 2.6223 0.7961 6 1 3.5862 1.4138 0.5993 7 6 2.0082 -1.2115 0.0005 8 1 3.0493 -1.2341 -0.2861 9 6 1.3531 -2.4049 0.3758 10 6 1.8224 -3.6475 -0.0922 11 6 1.1834 -4.7958 0.2746 12 6 0.0662 -4.7410 1.1049 13 8 -0.5671 -5.8871 1.4604 14 6 -1.7065 -5.7609 2.3134 15 6 -2.2823 -7.1484 2.6038 16 1 -2.4973 -7.6566 1.6638 17 8 -1.3330 -7.9112 3.3515 18 6 -3.5535 -7.0080 3.4010 19 6 -3.4955 -6.6885 4.7466 20 9 -2.2991 -6.5019 5.3458 21 6 -4.6643 -6.5555 5.4771 22 6 -5.8881 -6.7515 4.8655 23 6 -5.9471 -7.0753 3.5232 24 6 -4.7798 -7.2041 2.7896 25 9 -4.8376 -7.5211 1.4776 26 6 -0.4012 -3.5164 1.5769 27 6 0.2265 -2.3588 1.2196 28 1 -0.4850 0.8400 -0.0004 29 1 2.6857 -3.6913 -0.7397 30 1 1.5417 -5.7495 -0.0837 31 1 -1.4091 -5.2882 3.2494 32 1 -2.4627 -5.1491 1.8216 33 1 -1.0944 -7.5176 4.2019 34 1 -4.6194 -6.3024 6.5261 35 1 -6.7990 -6.6519 5.4371 36 1 -6.9039 -7.2286 3.0465 37 1 -1.2653 -3.4829 2.2238 38 1 -0.1399 -1.4099 1.5825 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755316071.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:09 Heat of formation + Delta-G solvation = -149.478107 kcal Electronic energy + Delta-G solvation = -25836.336087 eV Core-core repulsion = 21665.150664 eV Total energy + Delta-G solvation = -4171.185422 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.101 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.33524 -50.16618 -40.85296 -40.04996 -38.61442 -37.58546 -35.24649 -33.18877 -31.60493 -31.38044 -31.23764 -29.55260 -26.74125 -25.28725 -23.99206 -23.29637 -22.69147 -22.15772 -19.44382 -19.29538 -18.93826 -18.57764 -18.18435 -17.36453 -17.04020 -16.93280 -16.74311 -16.68419 -16.46445 -15.91410 -15.74529 -15.62028 -15.24557 -15.09140 -14.65887 -14.25637 -14.00339 -13.84586 -13.64798 -13.34518 -13.29490 -13.04340 -12.95004 -12.79736 -12.75553 -12.35092 -12.12171 -11.78342 -11.65604 -11.45684 -11.24990 -10.90219 -10.10148 -9.86069 -9.61917 -8.96395 -8.62838 -6.25687 -0.22030 -0.12540 0.89220 1.00177 1.39200 1.48537 1.55328 2.15337 2.22034 2.40150 2.69404 2.70759 3.14976 3.26762 3.36103 3.56641 3.66114 3.68311 3.84484 3.89107 4.14843 4.17602 4.24798 4.38733 4.50371 4.64358 4.73089 4.83449 4.95117 4.96641 4.98832 5.11695 5.12945 5.33162 5.46099 5.61982 5.66562 5.92081 6.02615 6.18511 6.39830 6.51538 6.72518 6.92173 7.03989 8.34634 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.018670 B = 0.002874 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.361277 B = 9739.636496 C =10156.877916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.034 3.966 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.498 4.498 8 H 0.078 0.922 9 C 0.057 3.943 10 C -0.204 4.204 11 C -0.118 4.118 12 C -0.009 4.009 13 O -0.326 6.326 14 C 0.042 3.958 15 C 0.161 3.839 16 H 0.114 0.886 17 O -0.558 6.558 18 C -0.208 4.208 19 C 0.118 3.882 20 F -0.135 7.135 21 C -0.153 4.153 22 C -0.042 4.042 23 C -0.153 4.153 24 C 0.122 3.878 25 F -0.138 7.138 26 C -0.175 4.175 27 C -0.154 4.154 28 H 0.288 0.712 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.382 0.618 34 H 0.173 0.827 35 H 0.191 0.809 36 H 0.173 0.827 37 H 0.112 0.888 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.974 -10.264 12.066 21.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.188 1.188 5 H -0.190 1.190 6 H -0.183 1.183 7 C -0.528 4.528 8 H 0.096 0.904 9 C 0.055 3.945 10 C -0.224 4.224 11 C -0.137 4.137 12 C -0.052 4.052 13 O -0.242 6.242 14 C -0.034 4.034 15 C 0.101 3.899 16 H 0.132 0.868 17 O -0.368 6.368 18 C -0.210 4.210 19 C 0.099 3.901 20 F -0.113 7.113 21 C -0.171 4.171 22 C -0.060 4.060 23 C -0.172 4.172 24 C 0.103 3.897 25 F -0.116 7.116 26 C -0.194 4.194 27 C -0.174 4.174 28 H 0.098 0.902 29 H 0.131 0.869 30 H 0.137 0.863 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.235 0.765 34 H 0.191 0.809 35 H 0.208 0.792 36 H 0.190 0.810 37 H 0.130 0.870 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -15.115 -10.703 11.464 21.782 hybrid contribution 0.684 1.258 0.008 1.432 sum -14.431 -9.444 11.473 20.714 Atomic orbital electron populations 1.69893 1.09012 1.30498 1.36339 1.26758 0.95495 1.04532 0.91237 0.85180 0.79165 0.75924 0.79346 1.18770 1.19040 1.18263 1.19737 0.98415 0.92338 1.42276 0.90417 1.17960 0.92609 0.93255 0.90661 1.20817 1.03795 0.92118 1.05666 1.19893 0.95402 0.98358 1.00019 1.18743 0.97568 0.84347 1.04575 1.85837 1.42842 1.29860 1.65667 1.23298 0.87885 0.97969 0.94244 1.20437 0.84340 0.90476 0.94630 0.86850 1.86595 1.62228 1.51147 1.36811 1.20333 0.95641 1.09965 0.95092 1.17487 0.81980 1.01032 0.89637 1.91380 1.44183 1.92564 1.83196 1.21643 0.90219 1.02563 1.02682 1.21454 0.98758 0.92707 0.93047 1.21655 0.97558 1.02359 0.95616 1.17492 0.93640 1.00131 0.78469 1.91520 1.97091 1.90085 1.32947 1.20769 1.01822 0.92553 1.04246 1.20894 0.99364 0.96591 1.00506 0.90179 0.86923 0.86293 0.92147 0.92020 0.76527 0.80943 0.79212 0.80954 0.86994 0.87401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.99 10.97 21.82 0.24 -43.75 16 2 C 0.03 1.72 5.13 85.23 0.44 2.16 16 3 Si 0.98 38.50 29.60 68.60 2.03 40.53 16 4 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 5 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 6 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 7 C -0.50 -27.32 9.04 23.40 0.21 -27.11 16 8 H 0.08 4.09 7.91 -2.91 -0.02 4.06 16 9 C 0.06 3.20 5.57 -21.28 -0.12 3.08 16 10 C -0.20 -10.48 9.74 22.48 0.22 -10.27 16 11 C -0.12 -5.72 9.92 22.11 0.22 -5.50 16 12 C -0.01 -0.42 6.71 22.79 0.15 -0.27 16 13 O -0.33 -14.21 10.09 -85.31 -0.86 -15.07 16 14 C 0.04 1.48 4.30 71.98 0.31 1.79 16 15 C 0.16 4.85 3.32 29.85 0.10 4.95 16 16 H 0.11 3.56 7.27 -2.39 -0.02 3.55 16 17 O -0.56 -17.59 13.20 -144.34 -1.91 -19.50 16 18 C -0.21 -4.97 4.98 -19.78 -0.10 -5.07 16 19 C 0.12 2.38 7.04 22.37 0.16 2.54 16 20 F -0.13 -3.00 14.10 44.97 0.63 -2.37 16 21 C -0.15 -1.88 10.03 22.32 0.22 -1.65 16 22 C -0.04 -0.35 10.04 22.25 0.22 -0.13 16 23 C -0.15 -1.92 10.02 22.32 0.22 -1.70 16 24 C 0.12 2.55 7.24 22.37 0.16 2.71 16 25 F -0.14 -3.35 16.27 44.97 0.73 -2.62 16 26 C -0.18 -8.61 8.97 22.11 0.20 -8.41 16 27 C -0.15 -8.38 8.64 22.48 0.19 -8.18 16 28 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 29 H 0.11 5.33 8.06 -2.91 -0.02 5.31 16 30 H 0.12 5.15 8.06 -2.91 -0.02 5.12 16 31 H 0.06 2.06 7.26 -2.39 -0.02 2.05 16 32 H 0.06 2.15 7.66 -2.39 -0.02 2.13 16 33 H 0.38 10.38 6.34 -74.06 -0.47 9.91 16 34 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 35 H 0.19 -0.02 8.06 -2.91 -0.02 -0.05 16 36 H 0.17 1.21 8.06 -2.91 -0.02 1.18 16 37 H 0.11 4.90 6.27 -2.91 -0.02 4.88 16 38 H 0.11 6.04 6.18 -2.91 -0.02 6.02 16 Total: -1.00 -67.52 333.71 4.34 -63.18 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: 0.65 Total: 30.65 kcal Atomic # 6 Polarization: -53.87 SS G_CDS: 2.81 Total: -51.06 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.24 Total: -43.75 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -2.77 Total: -34.56 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 1.37 Total: -4.99 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Total: -67.52 4.34 -63.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755316071.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.298 kcal (2) G-P(sol) polarization free energy of solvation -67.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds