Wall clock time and date at job start Tue Mar 31 2020 13:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34962 * 119.99693 * 2 1 4 4 C 1.47113 * 119.99677 * 174.24100 * 3 2 1 5 5 C 1.39896 * 120.18085 * 320.10729 * 4 3 2 6 6 C 1.37836 * 119.83079 * 179.97438 * 5 4 3 7 7 C 1.38453 * 120.21500 * 0.02562 * 6 5 4 8 8 C 1.38326 * 120.36864 * 0.02562 * 7 6 5 9 9 C 1.38069 * 120.15796 * 359.73893 * 8 7 6 10 10 Cl 1.73608 * 120.10828 * 180.28423 * 9 8 7 11 11 C 1.46183 * 120.00057 * 180.02562 * 2 1 3 12 12 O 1.21623 * 119.99968 * 288.24298 * 11 2 1 13 13 O 1.34916 * 119.99889 * 108.23863 * 11 2 1 14 14 C 1.42899 * 116.99701 * 185.17635 * 13 11 2 15 15 C 1.53002 * 109.46721 * 184.75626 * 14 13 11 16 16 C 1.50698 * 115.54821 * 174.34648 * 15 14 13 17 17 H 1.08004 * 120.00060 * 206.87208 * 16 15 14 18 18 C 1.37885 * 120.00005 * 26.59536 * 16 15 14 19 19 N 1.31510 * 119.99810 * 355.82000 * 18 16 15 20 20 Si 1.86795 * 119.99963 * 175.81375 * 18 16 15 21 21 H 1.48502 * 109.47093 * 90.00440 * 20 18 16 22 22 H 1.48498 * 109.47172 * 209.99941 * 20 18 16 23 23 H 1.48503 * 109.47405 * 330.00348 * 20 18 16 24 24 C 1.53000 * 117.50418 * 320.01939 * 15 14 13 25 25 C 1.52996 * 117.50159 * 28.67976 * 15 14 13 26 26 H 1.09004 * 109.47317 * 275.01298 * 1 2 3 27 27 H 1.09001 * 109.47001 * 35.01299 * 1 2 3 28 28 H 1.08998 * 109.47224 * 155.01537 * 1 2 3 29 29 H 1.07998 * 120.00458 * 354.24577 * 3 2 1 30 30 H 1.07997 * 120.08133 * 359.94963 * 5 4 3 31 31 H 1.08003 * 119.89034 * 179.97438 * 6 5 4 32 32 H 1.08000 * 119.81792 * 179.97438 * 7 6 5 33 33 H 1.08004 * 119.92318 * 180.02562 * 8 7 6 34 34 H 1.08997 * 109.47456 * 64.76021 * 14 13 11 35 35 H 1.09000 * 109.47112 * 304.75708 * 14 13 11 36 36 H 0.97001 * 119.99866 * 185.00475 * 19 18 16 37 37 H 1.08991 * 117.49998 * 215.00407 * 24 15 14 38 38 H 1.08995 * 117.49313 * 0.02562 * 24 15 14 39 39 H 1.09003 * 117.49790 * 359.97438 * 25 15 14 40 40 H 1.09002 * 117.50235 * 144.97094 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1818 1.1688 0.0000 4 6 3.6474 1.1721 0.1278 5 6 4.2786 0.2858 1.0072 6 6 5.6522 0.2947 1.1209 7 6 6.4080 1.1776 0.3684 8 6 5.7927 2.0583 -0.5029 9 6 4.4181 2.0592 -0.6325 10 17 3.6477 3.1601 -1.7319 11 6 2.2380 -1.2660 -0.0006 12 8 2.2565 -1.9579 0.9995 13 8 2.8920 -1.6668 -1.1105 14 6 3.4892 -2.9646 -1.0784 15 6 4.2794 -3.1943 -2.3682 16 6 5.0771 -4.4717 -2.4230 17 1 5.9618 -4.5299 -3.0398 18 6 4.6807 -5.5643 -1.6812 19 7 3.6554 -5.4670 -0.8635 20 14 5.6000 -7.1829 -1.8381 21 1 6.7046 -7.2228 -0.8464 22 1 4.6661 -8.3092 -1.5842 23 1 6.1601 -7.3034 -3.2081 24 6 3.6621 -2.6904 -3.6743 25 6 4.8652 -1.9653 -3.0662 26 1 -0.3634 0.0898 1.0238 27 1 -0.3633 0.8417 -0.5896 28 1 -0.3633 -0.9315 -0.4340 29 1 1.6459 2.1018 -0.0938 30 1 3.6910 -0.4032 1.5957 31 1 6.1405 -0.3888 1.7998 32 1 7.4838 1.1793 0.4629 33 1 6.3893 2.7436 -1.0867 34 1 2.7096 -3.7213 -0.9904 35 1 4.1613 -3.0342 -0.2231 36 1 3.4212 -6.2122 -0.2884 37 1 3.8328 -3.2828 -4.5731 38 1 2.6931 -2.1949 -3.6146 39 1 4.6872 -0.9930 -2.6068 40 1 5.8276 -2.0805 -3.5648 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756567863.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:15 Heat of formation + Delta-G solvation = -26.221309 kcal Electronic energy + Delta-G solvation = -24984.206421 eV Core-core repulsion = 21370.162494 eV Total energy + Delta-G solvation = -3614.043926 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.097 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.13988 -38.95240 -36.94590 -36.42594 -35.06030 -34.84852 -32.30315 -31.18425 -30.71385 -27.00614 -26.50319 -25.57758 -23.66243 -22.39492 -21.77976 -21.10682 -19.20041 -18.78351 -17.44676 -16.41677 -16.39763 -15.92996 -15.75720 -15.17201 -14.75321 -14.49322 -13.98757 -13.80451 -13.73721 -13.33892 -13.26952 -13.06901 -12.64571 -12.35491 -12.20736 -11.69121 -11.54355 -11.49333 -11.44788 -11.27615 -11.06366 -10.80740 -10.71496 -10.49055 -10.22790 -10.02927 -9.89401 -9.73523 -9.34879 -8.81898 -8.80274 -8.73721 -8.24244 -8.21627 -6.10046 -4.21864 0.75755 1.25645 1.95957 2.11591 2.75227 3.22097 3.29520 3.33011 3.59823 3.69996 4.28456 4.52783 4.80084 4.92034 4.98276 5.11374 5.26471 5.32460 5.40031 5.48855 5.57287 5.60464 5.66970 5.82735 5.92265 6.11355 6.16204 6.18313 6.31020 6.45429 6.47496 6.49595 6.51986 6.79136 6.80332 6.80555 6.99373 7.26181 7.34225 7.42519 7.66011 7.86000 8.23789 8.55566 8.77676 9.38428 10.84963 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.014295 B = 0.004514 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.308909 B = 6201.734464 C = 6728.251180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.115 4.115 3 C -0.078 4.078 4 C -0.054 4.054 5 C -0.100 4.100 6 C -0.105 4.105 7 C -0.102 4.102 8 C -0.112 4.112 9 C -0.019 4.019 10 Cl -0.069 7.069 11 C 0.498 3.502 12 O -0.510 6.510 13 O -0.353 6.353 14 C 0.115 3.885 15 C 0.048 3.952 16 C -0.482 4.482 17 H 0.068 0.932 18 C 0.064 3.936 19 N -0.886 5.886 20 Si 0.905 3.095 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.272 1.272 24 C -0.204 4.204 25 C -0.202 4.202 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.114 0.886 35 H 0.057 0.943 36 H 0.267 0.733 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.434 15.632 3.090 15.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.117 4.117 3 C -0.096 4.096 4 C -0.055 4.055 5 C -0.118 4.118 6 C -0.123 4.123 7 C -0.120 4.120 8 C -0.131 4.131 9 C -0.045 4.045 10 Cl -0.040 7.040 11 C 0.342 3.658 12 O -0.400 6.400 13 O -0.268 6.268 14 C 0.043 3.957 15 C 0.047 3.953 16 C -0.520 4.520 17 H 0.086 0.914 18 C -0.138 4.138 19 N -0.524 5.524 20 Si 0.732 3.268 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.197 1.197 24 C -0.242 4.242 25 C -0.239 4.239 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.159 0.841 30 H 0.158 0.842 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.132 0.868 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.599 15.330 3.341 15.771 hybrid contribution 0.523 -0.866 -0.178 1.027 sum -1.076 14.464 3.163 14.845 Atomic orbital electron populations 1.20689 0.88603 1.03659 1.03022 1.21403 0.96768 0.90866 1.02620 1.21939 0.91545 0.97433 0.98728 1.18827 0.93097 0.96214 0.97343 1.21720 0.95500 0.96828 0.97713 1.21188 0.93667 0.98189 0.99280 1.21198 1.00217 0.95020 0.95609 1.20940 0.92224 1.00269 0.99636 1.20986 0.92871 0.95210 0.95443 1.98351 1.81721 1.61865 1.62111 1.20961 0.76816 0.85716 0.82290 1.90879 1.59471 1.55531 1.34124 1.86166 1.62730 1.39791 1.38157 1.23006 0.98215 0.76663 0.97782 1.19125 0.96193 0.92314 0.87642 1.20583 1.10160 0.93614 1.27610 0.91368 1.25108 0.94634 0.99246 0.94855 1.69749 1.26568 1.32395 1.23739 0.86357 0.79316 0.82403 0.78686 1.20428 1.20903 1.19651 1.22987 0.95539 1.05316 1.00364 1.22817 0.96422 0.97387 1.07288 0.90139 0.90353 0.91007 0.84129 0.84249 0.85132 0.85055 0.84917 0.86813 0.92480 0.92238 0.90764 0.91217 0.90854 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 10.03 36.01 0.36 -0.84 16 2 C -0.12 -1.77 5.81 -102.60 -0.60 -2.37 16 3 C -0.08 -1.08 8.67 -37.15 -0.32 -1.40 16 4 C -0.05 -0.81 5.39 -105.03 -0.57 -1.38 16 5 C -0.10 -1.59 8.30 -39.11 -0.32 -1.91 16 6 C -0.11 -1.49 10.03 -39.65 -0.40 -1.89 16 7 C -0.10 -1.27 10.04 -39.47 -0.40 -1.67 16 8 C -0.11 -1.41 9.82 -39.61 -0.39 -1.80 16 9 C -0.02 -0.26 6.36 -38.99 -0.25 -0.50 16 10 Cl -0.07 -0.86 27.88 -51.86 -1.45 -2.30 16 11 C 0.50 9.98 4.45 33.92 0.15 10.13 16 12 O -0.51 -11.46 15.52 -19.36 -0.30 -11.76 16 13 O -0.35 -7.86 8.39 -41.08 -0.34 -8.21 16 14 C 0.12 2.92 4.07 37.16 0.15 3.07 16 15 C 0.05 1.22 2.55 -155.66 -0.40 0.82 16 16 C -0.48 -13.12 9.12 -34.44 -0.31 -13.43 16 17 H 0.07 1.83 7.82 -52.48 -0.41 1.41 16 18 C 0.06 1.71 5.41 -17.82 -0.10 1.62 16 19 N -0.89 -24.57 9.98 55.43 0.55 -24.01 16 20 Si 0.91 20.73 29.54 -169.99 -5.02 15.71 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 C -0.20 -4.76 9.67 -26.70 -0.26 -5.02 16 25 C -0.20 -4.61 9.63 -26.70 -0.26 -4.87 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.08 0.71 8.11 -51.93 -0.42 0.29 16 28 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 29 H 0.14 1.53 7.81 -52.49 -0.41 1.12 16 30 H 0.14 2.43 5.68 -52.49 -0.30 2.13 16 31 H 0.13 1.65 8.06 -52.48 -0.42 1.22 16 32 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 34 H 0.11 3.17 6.09 -51.93 -0.32 2.85 16 35 H 0.06 1.55 7.92 -51.93 -0.41 1.14 16 36 H 0.27 7.07 8.32 -40.82 -0.34 6.73 16 37 H 0.07 1.70 8.14 -51.93 -0.42 1.27 16 38 H 0.07 1.57 7.84 -51.93 -0.41 1.16 16 39 H 0.07 1.64 7.49 -51.93 -0.39 1.25 16 40 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 355.72 15.07 5.36 5.36 Total: -1.00 -29.72 355.72 -10.25 -39.97 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -5.15 Total: 6.68 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -3.90 Total: -21.43 kcal Atomic # 7 Polarization: -24.57 SS G_CDS: 0.55 Total: -24.01 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.65 Total: -19.97 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.45 Total: -2.30 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.72 -10.25 -39.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756567863.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.748 kcal (2) G-P(sol) polarization free energy of solvation -29.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds