Wall clock time and date at job start Tue Mar 31 2020 12:10:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86797 * 120.00055 * 2 1
4 4 H 1.48500 * 109.47218 * 240.00058 * 3 2 1
5 5 H 1.48501 * 109.47265 * 0.02562 * 3 2 1
6 6 H 1.48500 * 109.46995 * 120.00460 * 3 2 1
7 7 C 1.37879 * 119.99857 * 180.02562 * 2 1 3
8 8 H 1.08000 * 120.00164 * 179.97438 * 7 2 1
9 9 C 1.50703 * 120.00035 * 359.97438 * 7 2 1
10 10 N 1.46505 * 109.46999 * 179.97438 * 9 7 2
11 11 C 1.34775 * 119.99709 * 179.97438 * 10 9 7
12 12 O 1.21278 * 119.99928 * 0.02562 * 11 10 9
13 13 C 1.50696 * 119.99792 * 180.02562 * 11 10 9
14 14 O 1.45200 * 109.47154 * 179.97438 * 13 11 10
15 15 C 1.34850 * 117.00024 * 179.97438 * 14 13 11
16 16 O 1.21593 * 120.00022 * 0.02562 * 15 14 13
17 17 C 1.46723 * 119.99978 * 180.02562 * 15 14 13
18 18 C 1.36485 * 126.77518 * 359.97438 * 17 15 14
19 19 N 1.35385 * 109.76985 * 180.02562 * 18 17 15
20 20 H 0.97001 * 124.78117 * 179.97438 * 19 18 17
21 21 C 1.38062 * 110.43312 * 0.26945 * 19 18 17
22 22 C 1.39117 * 133.14139 * 179.74166 * 21 19 18
23 23 C 1.37755 * 119.96609 * 179.97438 * 22 21 19
24 24 C 1.38946 * 120.60412 * 0.02562 * 23 22 21
25 25 F 1.35104 * 119.87583 * 179.97438 * 24 23 22
26 26 C 1.37958 * 120.24539 * 359.56679 * 24 23 22
27 27 C 1.39268 * 119.65146 * 0.63476 * 26 24 23
28 28 H 0.97005 * 120.00282 * 359.97438 * 1 2 3
29 29 H 1.09003 * 109.46949 * 59.99971 * 9 7 2
30 30 H 1.09001 * 109.47207 * 299.99898 * 9 7 2
31 31 H 0.97002 * 119.99695 * 0.02562 * 10 9 7
32 32 H 1.09003 * 109.47233 * 60.00242 * 13 11 10
33 33 H 1.09001 * 109.47036 * 300.00100 * 13 11 10
34 34 H 1.08011 * 125.11723 * 0.05249 * 18 17 15
35 35 H 1.08000 * 120.01632 * 359.96188 * 22 21 19
36 36 H 1.08001 * 119.69786 * 179.97438 * 23 22 21
37 37 H 1.08000 * 120.17249 * 179.97438 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.1029 1.6964 -1.2125
5 1 1.2841 2.7465 0.0006
6 1 3.1029 1.6963 1.2124
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2509 -2.4992 -0.0005
10 7 2.2030 -3.6127 -0.0018
11 6 1.7537 -4.8834 -0.0015
12 8 0.5613 -5.1049 -0.0006
13 6 2.7329 -6.0288 -0.0022
14 8 2.0069 -7.2863 -0.0010
15 6 2.7413 -8.4172 -0.0020
16 8 3.9556 -8.3536 -0.0033
17 6 2.0752 -9.7245 -0.0016
18 6 0.7302 -9.9562 0.0003
19 7 0.4952 -11.2895 0.0007
20 1 -0.3855 -11.6962 0.0023
21 6 1.6856 -11.9888 0.0052
22 6 1.9918 -13.3458 0.0119
23 6 3.3073 -13.7544 0.0146
24 6 4.3376 -12.8221 0.0112
25 9 5.6226 -13.2392 0.0144
26 6 4.0532 -11.4723 -0.0040
27 6 2.7269 -11.0475 -0.0025
28 1 -0.4851 0.8401 0.0004
29 1 0.6239 -2.5567 -0.8903
30 1 0.6246 -2.5571 0.8897
31 1 3.1566 -3.4354 -0.0021
32 1 3.3602 -5.9711 0.8874
33 1 3.3590 -5.9711 -0.8926
34 1 -0.0321 -9.1911 0.0009
35 1 1.1984 -14.0786 0.0153
36 1 3.5401 -14.8090 0.0203
37 1 4.8549 -10.7486 -0.0062
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000764170209.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:10:02
Heat of formation + Delta-G solvation = -110.462767 kcal
Electronic energy + Delta-G solvation = -24674.616715 eV
Core-core repulsion = 20525.043086 eV
Total energy + Delta-G solvation = -4149.573629 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 320.100 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-49.06644 -41.89918 -40.11559 -38.61700 -37.16339 -36.16025 -34.24859 -32.63124
-32.40803 -30.10147 -29.52627 -28.86556 -26.66987 -23.96397 -23.54393 -22.49730
-22.32322 -20.23008 -19.92403 -18.74237 -17.80395 -17.35819 -17.23461 -16.56693
-16.54080 -15.97160 -15.84895 -15.62791 -15.31543 -15.00844 -14.98215 -14.37256
-14.32173 -14.11291 -13.54301 -13.23233 -13.12938 -12.95027 -12.90653 -12.40865
-11.98886 -11.79865 -11.76062 -11.44684 -11.03820 -10.90555 -10.63628 -10.58314
-10.35063 -10.26920 -9.46186 -9.17970 -8.78359 -8.69330 -8.29988 -7.99353
-6.20211 -4.27565 0.43083 0.90233 1.47292 2.34042 2.59322 2.90067
3.18258 3.24228 3.29121 3.30596 3.35646 3.87617 4.02117 4.14435
4.32996 4.39885 4.54064 4.64542 4.85497 5.02854 5.08950 5.15966
5.21494 5.28585 5.35191 5.36222 5.53315 5.73759 5.81074 6.04116
6.07341 6.41102 6.56332 6.83977 7.21756 7.30507 7.44898 7.59653
7.81140 7.91397 8.49784 8.70423 8.95890 9.38796 10.89835
Molecular weight = 320.10amu
Principal moments of inertia in cm(-1)
A = 0.033266 B = 0.002008 C = 0.001897
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 841.506477 B =13938.661202 C =14759.698208
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.885 5.885
2 C 0.064 3.936
3 Si 0.906 3.094
4 H -0.275 1.275
5 H -0.285 1.285
6 H -0.275 1.275
7 C -0.546 4.546
8 H 0.064 0.936
9 C 0.252 3.748
10 N -0.707 5.707
11 C 0.501 3.499
12 O -0.537 6.537
13 C 0.052 3.948
14 O -0.330 6.330
15 C 0.538 3.462
16 O -0.514 6.514
17 C -0.223 4.223
18 C 0.159 3.841
19 N -0.574 5.574
20 H 0.426 0.574
21 C 0.072 3.928
22 C -0.090 4.090
23 C -0.135 4.135
24 C 0.082 3.918
25 F -0.139 7.139
26 C -0.103 4.103
27 C -0.033 4.033
28 H 0.267 0.733
29 H 0.029 0.971
30 H 0.029 0.971
31 H 0.393 0.607
32 H 0.097 0.903
33 H 0.097 0.903
34 H 0.199 0.801
35 H 0.135 0.865
36 H 0.141 0.859
37 H 0.147 0.853
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.089 -27.789 0.019 27.960
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.522 5.522
2 C -0.140 4.140
3 Si 0.733 3.267
4 H -0.200 1.200
5 H -0.211 1.211
6 H -0.200 1.200
7 C -0.584 4.584
8 H 0.082 0.918
9 C 0.132 3.868
10 N -0.357 5.357
11 C 0.284 3.716
12 O -0.415 6.415
13 C -0.026 4.026
14 O -0.245 6.245
15 C 0.383 3.617
16 O -0.404 6.404
17 C -0.232 4.232
18 C 0.025 3.975
19 N -0.175 5.175
20 H 0.264 0.736
21 C -0.032 4.032
22 C -0.111 4.111
23 C -0.154 4.154
24 C 0.062 3.938
25 F -0.118 7.118
26 C -0.123 4.123
27 C -0.037 4.037
28 H 0.077 0.923
29 H 0.047 0.953
30 H 0.047 0.953
31 H 0.226 0.774
32 H 0.115 0.885
33 H 0.115 0.885
34 H 0.215 0.785
35 H 0.153 0.847
36 H 0.159 0.841
37 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges 2.337 -27.815 0.016 27.913
hybrid contribution 0.839 0.913 0.002 1.240
sum 3.176 -26.902 0.018 27.088
Atomic orbital electron populations
1.69960 1.06116 1.27515 1.48641 1.24951 0.94944 0.99494 0.94606
0.86443 0.79391 0.82153 0.78746 1.20021 1.21067 1.20027 1.21179
0.93324 0.90320 1.53580 0.91792 1.19167 0.88159 0.81536 0.97989
1.46369 1.11552 1.05376 1.72378 1.19895 0.89103 0.83990 0.78620
1.90686 1.16369 1.84613 1.49791 1.22835 0.94328 0.80743 1.04681
1.86591 1.39968 1.13798 1.84172 1.19920 0.85276 0.83687 0.72783
1.90838 1.14624 1.87826 1.47121 1.18922 0.92201 0.89350 1.22723
1.22583 0.97247 0.84801 0.92863 1.41642 1.07989 1.05531 1.62319
0.73572 1.18226 0.85121 0.93261 1.06626 1.19846 0.96443 0.91573
1.03198 1.20794 0.91121 0.99840 1.03675 1.17370 0.78741 0.92277
1.05444 1.91505 1.35348 1.90734 1.94166 1.20583 0.96461 0.94235
1.00974 1.18329 0.92002 0.90636 1.02707 0.92329 0.95274 0.95269
0.77377 0.88470 0.88461 0.78469 0.84706 0.84112 0.83502
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.64 13.29 55.43 0.74 -24.90 16
2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16
3 Si 0.91 20.58 29.54 -169.99 -5.02 15.56 16
4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16
5 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16
6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16
7 C -0.55 -14.51 9.28 -34.44 -0.32 -14.83 16
8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16
9 C 0.25 6.50 5.43 -5.19 -0.03 6.47 16
10 N -0.71 -14.41 5.55 -61.47 -0.34 -14.76 16
11 C 0.50 9.82 7.91 -10.99 -0.09 9.73 16
12 O -0.54 -12.66 16.50 -14.10 -0.23 -12.90 16
13 C 0.05 0.78 5.96 36.00 0.21 1.00 16
14 O -0.33 -5.11 9.58 -47.59 -0.46 -5.56 16
15 C 0.54 7.79 7.93 34.16 0.27 8.06 16
16 O -0.51 -8.37 15.95 -19.34 -0.31 -8.67 16
17 C -0.22 -2.64 6.27 -103.34 -0.65 -3.29 16
18 C 0.16 1.31 11.62 -16.62 -0.19 1.12 16
19 N -0.57 -3.45 5.99 -10.46 -0.06 -3.51 16
20 H 0.43 0.95 8.96 -40.82 -0.37 0.58 16
21 C 0.07 0.60 7.25 -83.93 -0.61 -0.01 16
22 C -0.09 -0.58 10.07 -39.43 -0.40 -0.98 16
23 C -0.13 -0.99 9.99 -39.50 -0.39 -1.39 16
24 C 0.08 0.82 7.29 -39.42 -0.29 0.53 16
25 F -0.14 -1.50 17.26 2.25 0.04 -1.46 16
26 C -0.10 -1.18 9.82 -39.30 -0.39 -1.57 16
27 C -0.03 -0.37 6.26 -104.95 -0.66 -1.02 16
28 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16
29 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16
30 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16
31 H 0.39 6.76 8.32 -40.82 -0.34 6.42 16
32 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16
33 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16
34 H 0.20 1.25 8.06 -52.48 -0.42 0.83 16
35 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16
36 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16
37 H 0.15 1.81 7.45 -52.49 -0.39 1.41 16
LS Contribution 342.89 15.07 5.17 5.17
Total: -1.00 -35.17 342.89 -7.69 -42.85
By element:
Atomic # 1 Polarization: 6.30 SS G_CDS: -3.59 Total: 2.71 kcal
Atomic # 6 Polarization: 9.09 SS G_CDS: -3.62 Total: 5.47 kcal
Atomic # 7 Polarization: -43.50 SS G_CDS: 0.33 Total: -43.17 kcal
Atomic # 8 Polarization: -26.13 SS G_CDS: -1.00 Total: -27.13 kcal
Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal
Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal
Total LS contribution 5.17 Total: 5.17 kcal
Total: -35.17 -7.69 -42.85 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000764170209.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -67.609 kcal
(2) G-P(sol) polarization free energy of solvation -35.167 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.776 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal
(6) G-S(sol) free energy of system = (1) + (5) -110.463 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds