Wall clock time and date at job start Tue Mar 31 2020 12:10:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86797 * 120.00055 * 2 1
4 4 H 1.48500 * 109.47218 * 240.00058 * 3 2 1
5 5 H 1.48501 * 109.47265 * 0.02562 * 3 2 1
6 6 H 1.48500 * 109.46995 * 120.00460 * 3 2 1
7 7 C 1.37879 * 119.99857 * 180.02562 * 2 1 3
8 8 H 1.08000 * 120.00164 * 179.97438 * 7 2 1
9 9 C 1.50703 * 120.00035 * 359.97438 * 7 2 1
10 10 N 1.46505 * 109.46999 * 179.97438 * 9 7 2
11 11 C 1.34775 * 119.99709 * 179.97438 * 10 9 7
12 12 O 1.21278 * 119.99928 * 0.02562 * 11 10 9
13 13 C 1.50696 * 119.99792 * 180.02562 * 11 10 9
14 14 O 1.45200 * 109.47154 * 179.97438 * 13 11 10
15 15 C 1.34850 * 117.00024 * 179.97438 * 14 13 11
16 16 O 1.21593 * 120.00022 * 0.02562 * 15 14 13
17 17 C 1.46723 * 119.99978 * 180.02562 * 15 14 13
18 18 C 1.36485 * 126.77518 * 359.97438 * 17 15 14
19 19 N 1.35385 * 109.76985 * 180.02562 * 18 17 15
20 20 H 0.97001 * 124.78117 * 179.97438 * 19 18 17
21 21 C 1.38062 * 110.43312 * 0.26945 * 19 18 17
22 22 C 1.39117 * 133.14139 * 179.74166 * 21 19 18
23 23 C 1.37755 * 119.96609 * 179.97438 * 22 21 19
24 24 C 1.38946 * 120.60412 * 0.02562 * 23 22 21
25 25 F 1.35104 * 119.87583 * 179.97438 * 24 23 22
26 26 C 1.37958 * 120.24539 * 359.56679 * 24 23 22
27 27 C 1.39268 * 119.65146 * 0.63476 * 26 24 23
28 28 H 0.97005 * 120.00282 * 359.97438 * 1 2 3
29 29 H 1.09003 * 109.46949 * 59.99971 * 9 7 2
30 30 H 1.09001 * 109.47207 * 299.99898 * 9 7 2
31 31 H 0.97002 * 119.99695 * 0.02562 * 10 9 7
32 32 H 1.09003 * 109.47233 * 60.00242 * 13 11 10
33 33 H 1.09001 * 109.47036 * 300.00100 * 13 11 10
34 34 H 1.08011 * 125.11723 * 0.05249 * 18 17 15
35 35 H 1.08000 * 120.01632 * 359.96188 * 22 21 19
36 36 H 1.08001 * 119.69786 * 179.97438 * 23 22 21
37 37 H 1.08000 * 120.17249 * 179.97438 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.1029 1.6964 -1.2125
5 1 1.2841 2.7465 0.0006
6 1 3.1029 1.6963 1.2124
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2509 -2.4992 -0.0005
10 7 2.2030 -3.6127 -0.0018
11 6 1.7537 -4.8834 -0.0015
12 8 0.5613 -5.1049 -0.0006
13 6 2.7329 -6.0288 -0.0022
14 8 2.0069 -7.2863 -0.0010
15 6 2.7413 -8.4172 -0.0020
16 8 3.9556 -8.3536 -0.0033
17 6 2.0752 -9.7245 -0.0016
18 6 0.7302 -9.9562 0.0003
19 7 0.4952 -11.2895 0.0007
20 1 -0.3855 -11.6962 0.0023
21 6 1.6856 -11.9888 0.0052
22 6 1.9918 -13.3458 0.0119
23 6 3.3073 -13.7544 0.0146
24 6 4.3376 -12.8221 0.0112
25 9 5.6226 -13.2392 0.0144
26 6 4.0532 -11.4723 -0.0040
27 6 2.7269 -11.0475 -0.0025
28 1 -0.4851 0.8401 0.0004
29 1 0.6239 -2.5567 -0.8903
30 1 0.6246 -2.5571 0.8897
31 1 3.1566 -3.4354 -0.0021
32 1 3.3602 -5.9711 0.8874
33 1 3.3590 -5.9711 -0.8926
34 1 -0.0321 -9.1911 0.0009
35 1 1.1984 -14.0786 0.0153
36 1 3.5401 -14.8090 0.0203
37 1 4.8549 -10.7486 -0.0062
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000764170209.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:10:02
Heat of formation + Delta-G solvation = -134.196508 kcal
Electronic energy + Delta-G solvation = -24675.645887 eV
Core-core repulsion = 20525.043086 eV
Total energy + Delta-G solvation = -4150.602801 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 320.100 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-49.86277 -42.59837 -41.31953 -40.21096 -37.81828 -37.36445 -36.15598 -34.40171
-33.34250 -31.14949 -30.26267 -30.10196 -28.40659 -25.14179 -24.28554 -24.17223
-23.01465 -21.62315 -21.19856 -19.50307 -19.09730 -18.53742 -18.26565 -17.74602
-17.61262 -17.29154 -16.97698 -16.64221 -16.62812 -16.23817 -16.17785 -15.78917
-15.45068 -14.91508 -14.62475 -14.40209 -14.22427 -14.07163 -13.90929 -13.81178
-13.60813 -13.55760 -12.95111 -12.67998 -12.44681 -12.23579 -12.16808 -11.86079
-11.67454 -11.51299 -10.98711 -10.88426 -10.79726 -9.90943 -9.36718 -9.00955
-8.28748 -6.44984 -0.27610 0.21246 0.65806 1.25216 1.45292 1.48267
1.56609 1.57224 1.91923 2.02161 2.35753 2.61742 2.63143 3.06330
3.17734 3.53688 3.67139 3.73710 3.79344 4.04445 4.06702 4.09009
4.26072 4.35813 4.48546 4.56616 4.92514 5.08281 5.10585 5.15625
5.22438 5.23850 5.35330 5.39588 5.43317 5.64354 5.83255 5.88479
6.40116 6.63438 6.69477 6.81483 7.21278 7.36544 8.82957
Molecular weight = 320.10amu
Principal moments of inertia in cm(-1)
A = 0.033266 B = 0.002008 C = 0.001897
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 841.506477 B =13938.661202 C =14759.698208
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.929 5.929
2 C 0.005 3.995
3 Si 0.984 3.016
4 H -0.263 1.263
5 H -0.286 1.286
6 H -0.263 1.263
7 C -0.558 4.558
8 H 0.085 0.915
9 C 0.267 3.733
10 N -0.700 5.700
11 C 0.503 3.497
12 O -0.580 6.580
13 C 0.062 3.938
14 O -0.341 6.341
15 C 0.538 3.462
16 O -0.544 6.544
17 C -0.271 4.271
18 C 0.190 3.810
19 N -0.548 5.548
20 H 0.448 0.552
21 C 0.071 3.929
22 C -0.069 4.069
23 C -0.133 4.133
24 C 0.072 3.928
25 F -0.149 7.149
26 C -0.135 4.135
27 C -0.057 4.057
28 H 0.269 0.731
29 H -0.006 1.006
30 H -0.006 1.006
31 H 0.412 0.588
32 H 0.120 0.880
33 H 0.120 0.880
34 H 0.219 0.781
35 H 0.180 0.820
36 H 0.171 0.829
37 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.059 -29.559 0.027 29.716
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.567 5.567
2 C -0.195 4.195
3 Si 0.807 3.193
4 H -0.188 1.188
5 H -0.211 1.211
6 H -0.188 1.188
7 C -0.596 4.596
8 H 0.103 0.897
9 C 0.145 3.855
10 N -0.352 5.352
11 C 0.289 3.711
12 O -0.460 6.460
13 C -0.015 4.015
14 O -0.257 6.257
15 C 0.386 3.614
16 O -0.435 6.435
17 C -0.280 4.280
18 C 0.052 3.948
19 N -0.150 5.150
20 H 0.291 0.709
21 C -0.034 4.034
22 C -0.088 4.088
23 C -0.153 4.153
24 C 0.053 3.947
25 F -0.128 7.128
26 C -0.154 4.154
27 C -0.061 4.061
28 H 0.078 0.922
29 H 0.012 0.988
30 H 0.012 0.988
31 H 0.248 0.752
32 H 0.138 0.862
33 H 0.138 0.862
34 H 0.235 0.765
35 H 0.197 0.803
36 H 0.188 0.812
37 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges 2.330 -29.645 0.024 29.736
hybrid contribution 0.765 1.319 0.000 1.525
sum 3.096 -28.326 0.024 28.494
Atomic orbital electron populations
1.70117 1.08145 1.28657 1.49776 1.26030 0.95797 1.03785 0.93875
0.85218 0.77909 0.76722 0.79436 1.18764 1.21114 1.18774 1.21588
0.94402 0.90504 1.53123 0.89738 1.18625 0.88527 0.83663 0.94679
1.46058 1.11737 1.04788 1.72576 1.20588 0.89247 0.84556 0.76741
1.90660 1.18646 1.85274 1.51441 1.22686 0.92699 0.79224 1.06860
1.86578 1.40496 1.14064 1.84575 1.20367 0.85104 0.83992 0.71944
1.90812 1.15735 1.88039 1.48953 1.18955 0.93890 0.88311 1.26818
1.22813 0.96223 0.86017 0.89727 1.41606 1.08590 1.04593 1.60218
0.70875 1.18411 0.84906 0.93672 1.06441 1.20330 0.97107 0.91366
1.00011 1.21147 0.90707 1.00697 1.02745 1.17650 0.79064 0.92354
1.05672 1.91473 1.36279 1.90725 1.94279 1.20490 0.96424 0.94700
1.03823 1.18518 0.92670 0.91266 1.03625 0.92202 0.98826 0.98818
0.75207 0.86209 0.86200 0.76452 0.80254 0.81175 0.86062
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -55.05 13.29 21.45 0.28 -54.76 16
2 C 0.01 0.28 5.46 84.66 0.46 0.74 16
3 Si 0.98 41.83 29.54 68.60 2.03 43.86 16
4 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16
5 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16
6 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16
7 C -0.56 -29.81 9.28 25.60 0.24 -29.57 16
8 H 0.08 4.06 7.60 -2.91 -0.02 4.04 16
9 C 0.27 14.32 5.43 85.63 0.46 14.78 16
10 N -0.70 -28.87 5.55 -466.78 -2.59 -31.46 16
11 C 0.50 19.97 7.91 87.66 0.69 20.67 16
12 O -0.58 -28.19 16.50 15.78 0.26 -27.93 16
13 C 0.06 1.86 5.96 71.23 0.42 2.28 16
14 O -0.34 -10.60 9.58 -51.24 -0.49 -11.09 16
15 C 0.54 15.95 7.93 70.04 0.56 16.50 16
16 O -0.54 -18.42 15.95 19.53 0.31 -18.11 16
17 C -0.27 -6.40 6.27 -19.03 -0.12 -6.52 16
18 C 0.19 2.77 11.62 83.74 0.97 3.74 16
19 N -0.55 -4.80 5.99 -187.00 -1.12 -5.92 16
20 H 0.45 0.02 8.96 -92.71 -0.83 -0.81 16
21 C 0.07 0.98 7.25 38.89 0.28 1.27 16
22 C -0.07 -0.61 10.07 22.37 0.23 -0.38 16
23 C -0.13 -1.61 9.99 22.33 0.22 -1.39 16
24 C 0.07 1.44 7.29 22.37 0.16 1.60 16
25 F -0.15 -3.28 17.26 44.97 0.78 -2.50 16
26 C -0.13 -3.26 9.82 22.45 0.22 -3.04 16
27 C -0.06 -1.27 6.26 -20.08 -0.13 -1.40 16
28 H 0.27 14.94 8.31 -92.70 -0.77 14.17 16
29 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16
30 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16
31 H 0.41 13.83 8.32 -92.71 -0.77 13.06 16
32 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16
33 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16
34 H 0.22 2.26 8.06 -2.90 -0.02 2.23 16
35 H 0.18 0.04 8.06 -2.91 -0.02 0.02 16
36 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16
37 H 0.12 3.40 7.45 -2.91 -0.02 3.38 16
Total: -1.00 -81.12 342.89 3.69 -77.43
By element:
Atomic # 1 Polarization: 11.65 SS G_CDS: -0.44 Total: 11.20 kcal
Atomic # 6 Polarization: 14.60 SS G_CDS: 4.68 Total: 19.28 kcal
Atomic # 7 Polarization: -88.72 SS G_CDS: -3.42 Total: -92.14 kcal
Atomic # 8 Polarization: -57.21 SS G_CDS: 0.08 Total: -57.13 kcal
Atomic # 9 Polarization: -3.28 SS G_CDS: 0.78 Total: -2.50 kcal
Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal
Total: -81.12 3.69 -77.43 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000764170209.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -56.768 kcal
(2) G-P(sol) polarization free energy of solvation -81.123 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.891 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.694 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.428 kcal
(6) G-S(sol) free energy of system = (1) + (5) -134.197 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds