Wall clock time and date at job start Tue Mar 31 2020 12:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86799 * 120.00259 * 2 1 4 4 H 1.48497 * 109.46893 * 269.99658 * 3 2 1 5 5 H 1.48501 * 109.47099 * 29.99263 * 3 2 1 6 6 H 1.48496 * 109.47340 * 149.99733 * 3 2 1 7 7 C 1.38657 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00499 * 180.02562 * 7 2 1 9 9 O 1.34830 * 120.00007 * 0.02562 * 7 2 1 10 10 C 1.35753 * 117.00413 * 185.42017 * 9 7 2 11 11 C 1.38894 * 120.07191 * 185.70387 * 10 9 7 12 12 C 1.38079 * 119.93293 * 179.97438 * 11 10 9 13 13 C 1.38321 * 120.06854 * 0.02735 * 12 11 10 14 14 C 1.38282 * 120.13926 * 359.97438 * 13 12 11 15 15 C 1.50694 * 119.96713 * 180.02562 * 14 13 12 16 16 H 1.09002 * 110.36037 * 352.71805 * 15 14 13 17 17 N 1.47714 * 110.39703 * 230.27566 * 15 14 13 18 18 C 1.35841 * 109.27590 * 221.51072 * 17 15 14 19 19 O 1.21278 * 126.37876 * 176.71491 * 18 17 15 20 20 C 1.50473 * 107.24022 * 356.73013 * 18 17 15 21 21 H 1.09002 * 110.83797 * 266.42277 * 20 18 17 22 22 C 1.52520 * 113.84907 * 141.42497 * 20 18 17 23 23 S 1.82268 * 107.28779 * 181.21436 * 22 20 18 24 24 C 1.81734 * 102.68133 * 50.29341 * 23 22 20 25 25 C 1.53947 * 109.32782 * 311.11369 * 24 23 22 26 26 N 1.45672 * 107.80243 * 61.35345 * 25 24 23 27 27 C 1.38131 * 120.06421 * 359.97438 * 14 13 12 28 28 H 0.96997 * 120.00191 * 0.02562 * 1 2 3 29 29 H 1.08006 * 120.03355 * 0.02562 * 11 10 9 30 30 H 1.08001 * 119.96609 * 180.29783 * 12 11 10 31 31 H 1.08003 * 119.93432 * 179.97438 * 13 12 11 32 32 H 0.97000 * 125.36712 * 41.46949 * 17 15 14 33 33 H 1.08999 * 109.89237 * 300.65898 * 22 20 18 34 34 H 1.09000 * 109.89135 * 61.76620 * 22 20 18 35 35 H 1.08999 * 109.49318 * 71.06843 * 24 23 22 36 36 H 1.08989 * 109.49934 * 191.15383 * 24 23 22 37 37 H 1.08996 * 109.79232 * 301.77652 * 25 24 23 38 38 H 1.09004 * 109.78994 * 180.92552 * 25 24 23 39 39 H 1.07999 * 120.03071 * 180.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4401 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0692 -3.5043 0.1153 11 6 1.4546 -4.7449 0.0037 12 6 2.2046 -5.8983 0.1204 13 6 3.5666 -5.8193 0.3488 14 6 4.1814 -4.5857 0.4605 15 6 5.6655 -4.5041 0.7087 16 1 6.0731 -5.4967 0.9008 17 7 5.9490 -3.6004 1.8423 18 6 7.0291 -2.8325 1.5443 19 8 7.4945 -1.9481 2.2314 20 6 7.5404 -3.2832 0.2028 21 1 8.3249 -4.0312 0.3182 22 6 8.0241 -2.1433 -0.6876 23 16 8.5644 -2.8798 -2.2649 24 6 7.1500 -3.9254 -2.7222 25 6 6.7404 -4.7857 -1.5131 26 7 6.3439 -3.8847 -0.4392 27 6 3.4367 -3.4282 0.3436 28 1 -0.4850 0.8400 -0.0004 29 1 0.3913 -4.8072 -0.1750 30 1 1.7281 -6.8632 0.0289 31 1 4.1511 -6.7229 0.4401 32 1 5.4431 -3.5611 2.6690 33 1 7.2099 -1.4409 -0.8660 34 1 8.8601 -1.6304 -0.2121 35 1 6.3126 -3.2945 -3.0201 36 1 7.4304 -4.5741 -3.5519 37 1 7.5846 -5.3952 -1.1908 38 1 5.9025 -5.4281 -1.7841 39 1 3.9176 -2.4651 0.4305 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765518871.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:40 Heat of formation + Delta-G solvation = -2.589556 kcal Electronic energy + Delta-G solvation = -25067.110624 eV Core-core repulsion = 21488.427904 eV Total energy + Delta-G solvation = -3578.682719 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -41.15833 -39.04255 -37.63948 -36.48559 -34.61332 -32.41338 -32.01328 -30.69430 -29.33678 -28.93555 -25.76272 -25.06021 -24.15643 -22.29105 -21.44931 -20.69368 -20.43426 -18.13652 -17.59250 -17.22055 -16.73488 -16.00638 -15.47633 -15.35101 -15.18473 -14.81098 -14.55160 -14.31753 -13.96139 -13.85401 -13.70522 -13.58728 -13.24720 -13.03330 -12.92224 -12.43150 -12.39353 -11.87452 -11.70653 -11.57134 -11.38433 -10.93968 -10.92270 -10.81974 -10.46014 -10.18571 -9.78572 -9.62083 -9.48819 -8.91050 -8.78957 -8.29014 -7.87190 -7.37392 -6.50121 -4.09021 1.55231 1.84814 2.19073 2.23026 2.47129 3.06512 3.11666 3.14310 3.18772 3.51582 3.94285 4.13740 4.32138 4.50886 4.57072 4.75658 4.80698 4.86985 4.98087 5.05093 5.06423 5.18475 5.27751 5.36694 5.57151 5.63648 5.72338 5.78416 5.97474 6.07439 6.21498 6.43204 6.53789 6.69195 6.72307 6.90684 6.99974 7.09750 7.23976 7.32885 7.66894 7.94176 8.10297 8.95991 9.62754 10.67387 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.010556 B = 0.005319 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.912393 B = 5263.128779 C = 6423.259635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.042 3.958 3 Si 0.936 3.064 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.390 4.390 8 H 0.091 0.909 9 O -0.174 6.174 10 C 0.147 3.853 11 C -0.182 4.182 12 C -0.079 4.079 13 C -0.200 4.200 14 C -0.063 4.063 15 C 0.348 3.652 16 H 0.069 0.931 17 N -0.724 5.724 18 C 0.538 3.462 19 O -0.514 6.514 20 C 0.024 3.976 21 H 0.100 0.900 22 C -0.053 4.053 23 S -0.263 6.263 24 C -0.076 4.076 25 C 0.058 3.942 26 N -0.517 5.517 27 C -0.185 4.185 28 H 0.271 0.729 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.422 0.578 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.056 0.944 38 H 0.100 0.900 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.390 -11.221 -2.078 17.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.163 4.163 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.077 6.077 10 C 0.093 3.907 11 C -0.202 4.202 12 C -0.097 4.097 13 C -0.220 4.220 14 C -0.065 4.065 15 C 0.154 3.846 16 H 0.087 0.913 17 N -0.382 5.382 18 C 0.321 3.679 19 O -0.387 6.387 20 C -0.089 4.089 21 H 0.117 0.883 22 C -0.202 4.202 23 S -0.036 6.036 24 C -0.224 4.224 25 C -0.071 4.071 26 N -0.245 5.245 27 C -0.205 4.205 28 H 0.081 0.919 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.123 0.877 32 H 0.263 0.737 33 H 0.120 0.880 34 H 0.134 0.866 35 H 0.117 0.883 36 H 0.129 0.871 37 H 0.075 0.925 38 H 0.118 0.882 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.904 -9.990 -2.663 17.327 hybrid contribution -0.537 0.010 1.231 1.343 sum 13.367 -9.980 -1.432 16.743 Atomic orbital electron populations 1.70026 1.05952 1.27784 1.45753 1.25258 0.95804 0.98807 0.96381 0.85769 0.79126 0.80124 0.78902 1.19732 1.20163 1.19041 1.21298 0.91739 0.80703 1.52871 0.89114 1.84002 1.34199 1.11490 1.78057 1.19392 0.90304 0.88150 0.92902 1.20295 1.00071 0.90148 1.09692 1.20562 0.93450 0.96864 0.98815 1.20349 0.94991 0.95463 1.11175 1.19166 0.91719 0.93704 1.01902 1.20769 0.92776 0.90412 0.80601 0.91331 1.46953 1.31913 1.39744 1.19561 1.20425 0.80076 0.80585 0.86821 1.90770 1.62118 1.29316 1.56529 1.22841 0.93965 0.98855 0.93219 0.88255 1.23171 1.05354 0.98417 0.93235 1.86837 1.28123 1.59053 1.29565 1.23612 0.98973 1.00071 0.99774 1.22326 1.00970 0.93635 0.90211 1.64146 1.18388 1.33047 1.08884 1.20885 0.93572 0.98424 1.07632 0.91947 0.86468 0.86833 0.87688 0.73701 0.88008 0.86574 0.88251 0.87106 0.92541 0.88172 0.85365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.97 13.67 55.48 0.76 -24.21 16 2 C 0.04 1.15 5.49 -17.52 -0.10 1.06 16 3 Si 0.94 20.87 29.55 -169.99 -5.02 15.85 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.39 -10.73 9.44 30.89 0.29 -10.44 16 8 H 0.09 2.37 5.29 -52.49 -0.28 2.10 16 9 O -0.17 -4.81 9.76 0.04 0.00 -4.81 16 10 C 0.15 3.33 6.65 -39.11 -0.26 3.07 16 11 C -0.18 -3.55 9.99 -39.40 -0.39 -3.94 16 12 C -0.08 -1.23 10.04 -39.61 -0.40 -1.63 16 13 C -0.20 -2.90 9.68 -39.53 -0.38 -3.28 16 14 C -0.06 -1.00 5.28 -104.65 -0.55 -1.55 16 15 C 0.35 4.43 3.27 -126.89 -0.41 4.02 16 16 H 0.07 0.72 7.85 -51.93 -0.41 0.31 16 17 N -0.72 -9.87 5.82 -56.77 -0.33 -10.20 16 18 C 0.54 7.97 8.21 -10.61 -0.09 7.88 16 19 O -0.51 -9.23 17.94 5.56 0.10 -9.13 16 20 C 0.02 0.29 2.49 -68.33 -0.17 0.12 16 21 H 0.10 1.04 7.69 -51.93 -0.40 0.64 16 22 C -0.05 -0.65 6.16 36.91 0.23 -0.42 16 23 S -0.26 -3.00 22.38 -107.50 -2.41 -5.40 16 24 C -0.08 -0.75 6.63 37.65 0.25 -0.50 16 25 C 0.06 0.57 5.69 -3.99 -0.02 0.55 16 26 N -0.52 -6.42 4.43 -224.00 -0.99 -7.42 16 27 C -0.19 -3.71 8.46 -39.39 -0.33 -4.05 16 28 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.12 2.22 8.06 -52.48 -0.42 1.80 16 30 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.11 1.21 7.98 -52.48 -0.42 0.79 16 32 H 0.42 5.52 8.96 -40.82 -0.37 5.15 16 33 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.12 1.35 8.14 -51.93 -0.42 0.92 16 35 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.47 7.68 -51.93 -0.40 0.07 16 38 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.13 2.81 5.70 -52.49 -0.30 2.51 16 LS Contribution 338.64 15.07 5.10 5.10 Total: -1.00 -31.21 338.64 -9.79 -41.01 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -4.66 Total: 8.33 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -2.34 Total: -9.11 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: -0.56 Total: -41.83 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.10 Total: -13.95 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -3.00 SS G_CDS: -2.41 Total: -5.40 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.21 -9.79 -41.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765518871.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.417 kcal (2) G-P(sol) polarization free energy of solvation -31.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds