Wall clock time and date at job start Tue Mar 31 2020 12:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86802 * 120.00177 * 2 1 4 4 H 1.48492 * 109.47292 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46815 * 299.99728 * 3 2 1 6 6 H 1.48496 * 109.47130 * 59.99566 * 3 2 1 7 7 C 1.38649 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00050 * 180.02562 * 7 2 1 9 9 O 1.34834 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.35750 * 117.00374 * 185.27045 * 9 7 2 11 11 C 1.38903 * 120.06585 * 352.95031 * 10 9 7 12 12 C 1.38083 * 119.92932 * 180.02562 * 11 10 9 13 13 C 1.38324 * 120.06755 * 0.25633 * 12 11 10 14 14 C 1.38277 * 120.13813 * 359.48649 * 13 12 11 15 15 C 1.50697 * 119.96703 * 180.25837 * 14 13 12 16 16 H 1.08999 * 110.35966 * 189.01179 * 15 14 13 17 17 N 1.47719 * 110.39883 * 311.32721 * 15 14 13 18 18 C 1.35837 * 109.27391 * 99.09748 * 17 15 14 19 19 O 1.21280 * 126.38237 * 176.72641 * 18 17 15 20 20 C 1.50482 * 107.24099 * 356.72788 * 18 17 15 21 21 H 1.09003 * 110.29264 * 266.68423 * 20 18 17 22 22 C 1.52516 * 113.85064 * 142.12242 * 20 18 17 23 23 S 1.82273 * 107.28567 * 181.20830 * 22 20 18 24 24 C 1.81742 * 102.67518 * 50.29495 * 23 22 20 25 25 C 1.53938 * 109.32877 * 311.10936 * 24 23 22 26 26 N 1.44956 * 108.41907 * 61.21509 * 25 24 23 27 27 C 1.38128 * 120.06630 * 0.51357 * 14 13 12 28 28 H 0.96999 * 119.99868 * 0.02562 * 1 2 3 29 29 H 1.08008 * 120.03771 * 0.04115 * 11 10 9 30 30 H 1.08005 * 119.96517 * 179.97438 * 12 11 10 31 31 H 1.07997 * 119.92483 * 179.72427 * 13 12 11 32 32 H 0.96992 * 125.36684 * 279.12397 * 17 15 14 33 33 H 1.09002 * 109.89237 * 300.65207 * 22 20 18 34 34 H 1.09005 * 109.89389 * 61.68721 * 22 20 18 35 35 H 1.09000 * 109.49349 * 71.06566 * 24 23 22 36 36 H 1.08998 * 109.49651 * 191.12114 * 24 23 22 37 37 H 1.09003 * 109.79233 * 180.93284 * 25 24 23 38 38 H 1.09007 * 109.79675 * 301.71862 * 25 24 23 39 39 H 1.08003 * 120.02873 * 179.72065 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8909 2.3964 -1.2126 6 1 1.8909 2.3965 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0695 -3.5044 0.1122 11 6 3.4566 -3.4427 0.0725 12 6 4.2012 -4.6000 0.1858 13 6 3.5671 -5.8204 0.3333 14 6 2.1866 -5.8846 0.3785 15 6 1.5000 -7.2156 0.5452 16 1 0.4248 -7.1083 0.4018 17 7 2.0504 -8.2017 -0.4070 18 6 2.9596 -8.9829 0.2319 19 8 3.5573 -9.9257 -0.2419 20 6 3.0872 -8.4604 1.6374 21 1 3.9076 -7.7456 1.7020 22 6 3.2541 -9.5527 2.6886 23 16 3.3540 -8.7309 4.3125 24 6 1.9097 -7.6279 4.2907 25 6 1.8931 -6.8362 2.9706 26 7 1.7864 -7.7774 1.8734 27 6 1.4361 -4.7304 0.2657 28 1 -0.4850 0.8400 -0.0004 29 1 3.9522 -2.4904 -0.0466 30 1 5.2798 -4.5527 0.1546 31 1 4.1517 -6.7246 0.4173 32 1 1.8020 -8.2791 -1.3414 33 1 2.3960 -10.2244 2.6650 34 1 4.1692 -10.1136 2.4986 35 1 0.9983 -8.2203 4.3710 36 1 1.9684 -6.9351 5.1301 37 1 1.0385 -6.1597 2.9566 38 1 2.8167 -6.2659 2.8705 39 1 0.3578 -4.7818 0.2966 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765518873.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:46 Heat of formation + Delta-G solvation = 0.943251 kcal Electronic energy + Delta-G solvation = -24823.139149 eV Core-core repulsion = 21244.609623 eV Total energy + Delta-G solvation = -3578.529525 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.49976 -39.08408 -37.78674 -36.32112 -34.62708 -32.44817 -32.10301 -30.82327 -29.50898 -28.81013 -25.98474 -25.16816 -24.18382 -22.33199 -21.79985 -20.64938 -20.39895 -18.10066 -17.63790 -17.43321 -16.69351 -16.20065 -15.61509 -15.32786 -15.10225 -14.97214 -14.58992 -14.42976 -13.99934 -13.86283 -13.77304 -13.67783 -13.23940 -13.03754 -12.90082 -12.64620 -12.28194 -11.89990 -11.73936 -11.62900 -11.42837 -11.23102 -11.01452 -10.85023 -10.55523 -10.19063 -9.83253 -9.65049 -9.57258 -9.00178 -8.81297 -8.40555 -7.88418 -7.48074 -6.60202 -4.19898 1.52278 1.74102 2.09525 2.20491 2.40337 3.01721 3.04455 3.05785 3.10389 3.47762 3.83391 4.12238 4.31098 4.41690 4.57177 4.67999 4.81882 4.92938 4.98190 5.04328 5.08784 5.26180 5.28948 5.49482 5.51926 5.55901 5.67866 5.75847 5.91364 5.99807 6.07250 6.33599 6.42256 6.58727 6.67689 6.78641 6.88588 7.00320 7.13000 7.21754 7.53223 7.83519 8.03534 8.85275 9.51177 10.57150 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.020253 B = 0.003404 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.209704 B = 8223.115670 C = 8745.790474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.042 3.958 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.154 3.846 11 C -0.222 4.222 12 C -0.070 4.070 13 C -0.202 4.202 14 C -0.102 4.102 15 C 0.347 3.653 16 H 0.117 0.883 17 N -0.723 5.723 18 C 0.541 3.459 19 O -0.519 6.519 20 C 0.014 3.986 21 H 0.112 0.888 22 C -0.052 4.052 23 S -0.262 6.262 24 C -0.074 4.074 25 C 0.056 3.944 26 N -0.517 5.517 27 C -0.168 4.168 28 H 0.271 0.729 29 H 0.129 0.871 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.420 0.580 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.068 0.932 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.290 -12.772 5.071 14.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.076 6.076 10 C 0.099 3.901 11 C -0.241 4.241 12 C -0.088 4.088 13 C -0.222 4.222 14 C -0.105 4.105 15 C 0.153 3.847 16 H 0.134 0.866 17 N -0.380 5.380 18 C 0.324 3.676 19 O -0.394 6.394 20 C -0.099 4.099 21 H 0.130 0.870 22 C -0.201 4.201 23 S -0.035 6.035 24 C -0.223 4.223 25 C -0.074 4.074 26 N -0.243 5.243 27 C -0.189 4.189 28 H 0.081 0.919 29 H 0.147 0.853 30 H 0.128 0.872 31 H 0.120 0.880 32 H 0.261 0.739 33 H 0.115 0.885 34 H 0.134 0.866 35 H 0.112 0.888 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.086 0.914 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.508 -13.539 5.921 15.188 hybrid contribution 0.083 1.764 -1.614 2.393 sum 3.591 -11.775 4.307 13.042 Atomic orbital electron populations 1.70038 1.05989 1.27833 1.45394 1.25305 0.95863 0.98906 0.96269 0.85639 0.79165 0.80203 0.78408 1.19042 1.20031 1.19992 1.21383 0.91848 0.80641 1.53152 0.88940 1.83974 1.34370 1.11461 1.77828 1.19280 0.90212 0.88081 0.92513 1.21261 0.93883 0.99117 1.09880 1.20736 0.98672 0.92135 0.97284 1.20450 0.93333 0.97096 1.11276 1.19944 0.94078 0.93772 1.02749 1.20917 0.98222 0.83723 0.81859 0.86585 1.46853 1.43246 1.34352 1.13590 1.20443 0.78035 0.81347 0.87745 1.90757 1.48178 1.27138 1.73283 1.23063 0.94687 0.98267 0.93853 0.87042 1.23142 1.07006 0.98222 0.91702 1.86931 1.39336 1.52746 1.24448 1.23634 0.98480 0.99876 1.00265 1.22187 1.04178 0.93268 0.87763 1.64125 1.26724 1.29343 1.04079 1.19940 0.99285 0.89772 1.09857 0.91877 0.85349 0.87223 0.88037 0.73931 0.88540 0.86647 0.88805 0.86938 0.88183 0.91384 0.86170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.87 13.67 55.48 0.76 -23.11 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 19.48 29.55 -169.99 -5.02 14.46 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.39 -10.33 9.49 30.88 0.29 -10.04 16 8 H 0.09 2.25 5.22 -52.48 -0.27 1.97 16 9 O -0.17 -4.56 9.76 0.04 0.00 -4.56 16 10 C 0.15 3.32 6.64 -39.11 -0.26 3.07 16 11 C -0.22 -4.38 9.16 -39.39 -0.36 -4.74 16 12 C -0.07 -1.17 10.04 -39.61 -0.40 -1.57 16 13 C -0.20 -3.12 7.87 -39.54 -0.31 -3.43 16 14 C -0.10 -1.53 3.82 -104.65 -0.40 -1.93 16 15 C 0.35 4.20 4.18 -126.88 -0.53 3.67 16 16 H 0.12 1.28 7.95 -51.93 -0.41 0.86 16 17 N -0.72 -8.60 5.89 -56.76 -0.33 -8.94 16 18 C 0.54 7.28 7.42 -10.61 -0.08 7.20 16 19 O -0.52 -8.44 17.93 5.56 0.10 -8.34 16 20 C 0.01 0.17 1.82 -68.16 -0.12 0.04 16 21 H 0.11 1.41 5.23 -51.93 -0.27 1.14 16 22 C -0.05 -0.56 6.18 36.91 0.23 -0.33 16 23 S -0.26 -2.88 22.38 -107.50 -2.41 -5.29 16 24 C -0.07 -0.71 6.65 37.65 0.25 -0.46 16 25 C 0.06 0.62 4.69 -4.38 -0.02 0.60 16 26 N -0.52 -5.90 4.81 -224.33 -1.08 -6.98 16 27 C -0.17 -3.02 9.62 -39.40 -0.38 -3.40 16 28 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.13 2.58 5.66 -52.48 -0.30 2.28 16 30 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 31 H 0.10 1.47 4.92 -52.49 -0.26 1.21 16 32 H 0.42 4.35 8.96 -40.82 -0.37 3.98 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.07 0.87 6.72 -51.93 -0.35 0.52 16 39 H 0.12 2.05 7.99 -52.48 -0.42 1.64 16 LS Contribution 328.10 15.07 4.94 4.94 Total: -1.00 -29.49 328.10 -9.54 -39.03 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -4.32 Total: 9.11 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -2.19 Total: -10.33 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: -0.66 Total: -39.03 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.10 Total: -12.90 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Atomic # 16 Polarization: -2.88 SS G_CDS: -2.41 Total: -5.29 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.49 -9.54 -39.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765518873.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.975 kcal (2) G-P(sol) polarization free energy of solvation -29.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds