Wall clock time and date at job start Tue Mar 31 2020 12:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86802 * 120.00177 * 2 1 4 4 H 1.48492 * 109.47292 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46815 * 299.99728 * 3 2 1 6 6 H 1.48496 * 109.47130 * 59.99566 * 3 2 1 7 7 C 1.38649 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00050 * 180.02562 * 7 2 1 9 9 O 1.34834 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.35750 * 117.00374 * 185.27045 * 9 7 2 11 11 C 1.38903 * 120.06585 * 352.95031 * 10 9 7 12 12 C 1.38083 * 119.92932 * 180.02562 * 11 10 9 13 13 C 1.38324 * 120.06755 * 0.25633 * 12 11 10 14 14 C 1.38277 * 120.13813 * 359.48649 * 13 12 11 15 15 C 1.50697 * 119.96703 * 180.25837 * 14 13 12 16 16 H 1.08999 * 110.35966 * 189.01179 * 15 14 13 17 17 N 1.47719 * 110.39883 * 311.32721 * 15 14 13 18 18 C 1.35837 * 109.27391 * 99.09748 * 17 15 14 19 19 O 1.21280 * 126.38237 * 176.72641 * 18 17 15 20 20 C 1.50482 * 107.24099 * 356.72788 * 18 17 15 21 21 H 1.09003 * 110.29264 * 266.68423 * 20 18 17 22 22 C 1.52516 * 113.85064 * 142.12242 * 20 18 17 23 23 S 1.82273 * 107.28567 * 181.20830 * 22 20 18 24 24 C 1.81742 * 102.67518 * 50.29495 * 23 22 20 25 25 C 1.53938 * 109.32877 * 311.10936 * 24 23 22 26 26 N 1.44956 * 108.41907 * 61.21509 * 25 24 23 27 27 C 1.38128 * 120.06630 * 0.51357 * 14 13 12 28 28 H 0.96999 * 119.99868 * 0.02562 * 1 2 3 29 29 H 1.08008 * 120.03771 * 0.04115 * 11 10 9 30 30 H 1.08005 * 119.96517 * 179.97438 * 12 11 10 31 31 H 1.07997 * 119.92483 * 179.72427 * 13 12 11 32 32 H 0.96992 * 125.36684 * 279.12397 * 17 15 14 33 33 H 1.09002 * 109.89237 * 300.65207 * 22 20 18 34 34 H 1.09005 * 109.89389 * 61.68721 * 22 20 18 35 35 H 1.09000 * 109.49349 * 71.06566 * 24 23 22 36 36 H 1.08998 * 109.49651 * 191.12114 * 24 23 22 37 37 H 1.09003 * 109.79233 * 180.93284 * 25 24 23 38 38 H 1.09007 * 109.79675 * 301.71862 * 25 24 23 39 39 H 1.08003 * 120.02873 * 179.72065 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8909 2.3964 -1.2126 6 1 1.8909 2.3965 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0695 -3.5044 0.1122 11 6 3.4566 -3.4427 0.0725 12 6 4.2012 -4.6000 0.1858 13 6 3.5671 -5.8204 0.3333 14 6 2.1866 -5.8846 0.3785 15 6 1.5000 -7.2156 0.5452 16 1 0.4248 -7.1083 0.4018 17 7 2.0504 -8.2017 -0.4070 18 6 2.9596 -8.9829 0.2319 19 8 3.5573 -9.9257 -0.2419 20 6 3.0872 -8.4604 1.6374 21 1 3.9076 -7.7456 1.7020 22 6 3.2541 -9.5527 2.6886 23 16 3.3540 -8.7309 4.3125 24 6 1.9097 -7.6279 4.2907 25 6 1.8931 -6.8362 2.9706 26 7 1.7864 -7.7774 1.8734 27 6 1.4361 -4.7304 0.2657 28 1 -0.4850 0.8400 -0.0004 29 1 3.9522 -2.4904 -0.0466 30 1 5.2798 -4.5527 0.1546 31 1 4.1517 -6.7246 0.4173 32 1 1.8020 -8.2791 -1.3414 33 1 2.3960 -10.2244 2.6650 34 1 4.1692 -10.1136 2.4986 35 1 0.9983 -8.2203 4.3710 36 1 1.9684 -6.9351 5.1301 37 1 1.0385 -6.1597 2.9566 38 1 2.8167 -6.2659 2.8705 39 1 0.3578 -4.7818 0.2966 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765518873.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:45 Heat of formation + Delta-G solvation = -19.855268 kcal Electronic energy + Delta-G solvation = -24824.041040 eV Core-core repulsion = 21244.609623 eV Total energy + Delta-G solvation = -3579.431417 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.59748 -40.63931 -39.03021 -37.77762 -35.65741 -34.30543 -33.15435 -32.01753 -30.83346 -30.04986 -27.55460 -26.52366 -25.18378 -23.62143 -23.14166 -21.96423 -21.42887 -19.69855 -19.06406 -18.56733 -17.96096 -17.21825 -16.71813 -16.59087 -16.41224 -16.29957 -15.92662 -15.82322 -15.53580 -15.10771 -14.94541 -14.72398 -14.40102 -14.29907 -14.05961 -13.86195 -13.58128 -13.33149 -12.98313 -12.86806 -12.66328 -12.58508 -12.43073 -12.26860 -12.11623 -11.30351 -11.19522 -10.86070 -10.77557 -10.67911 -9.92368 -9.75363 -9.09376 -8.75180 -8.48804 -6.16842 0.31933 0.60989 0.67672 1.20839 1.36253 1.42483 1.47746 1.52934 2.03294 2.16286 2.42313 2.78850 3.07305 3.17274 3.31076 3.46531 3.65496 3.69157 3.85287 4.00052 4.15694 4.17727 4.23267 4.31533 4.37394 4.45977 4.63828 4.67889 4.70095 4.86231 4.90837 5.02411 5.08781 5.16391 5.42402 5.43296 5.60653 5.64840 5.67233 5.89118 5.99160 6.05492 6.96591 7.00469 7.73961 8.73594 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.020253 B = 0.003404 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.209704 B = 8223.115670 C = 8745.790474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.017 4.017 3 Si 1.013 2.987 4 H -0.253 1.253 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.412 4.412 8 H 0.101 0.899 9 O -0.225 6.225 10 C 0.120 3.880 11 C -0.231 4.231 12 C -0.069 4.069 13 C -0.182 4.182 14 C -0.085 4.085 15 C 0.350 3.650 16 H 0.136 0.864 17 N -0.714 5.714 18 C 0.541 3.459 19 O -0.547 6.547 20 C 0.018 3.982 21 H 0.108 0.892 22 C -0.046 4.046 23 S -0.277 6.277 24 C -0.065 4.065 25 C 0.056 3.944 26 N -0.508 5.508 27 C -0.166 4.166 28 H 0.273 0.727 29 H 0.119 0.881 30 H 0.139 0.861 31 H 0.122 0.878 32 H 0.428 0.572 33 H 0.100 0.900 34 H 0.119 0.881 35 H 0.104 0.896 36 H 0.126 0.874 37 H 0.103 0.897 38 H 0.053 0.947 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.482 -14.312 5.699 16.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.216 4.216 3 Si 0.833 3.167 4 H -0.176 1.176 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.488 4.488 8 H 0.118 0.882 9 O -0.131 6.131 10 C 0.069 3.931 11 C -0.251 4.251 12 C -0.087 4.087 13 C -0.201 4.201 14 C -0.088 4.088 15 C 0.155 3.845 16 H 0.154 0.846 17 N -0.372 5.372 18 C 0.325 3.675 19 O -0.423 6.423 20 C -0.095 4.095 21 H 0.126 0.874 22 C -0.195 4.195 23 S -0.050 6.050 24 C -0.214 4.214 25 C -0.074 4.074 26 N -0.233 5.233 27 C -0.187 4.187 28 H 0.082 0.918 29 H 0.136 0.864 30 H 0.157 0.843 31 H 0.139 0.861 32 H 0.271 0.729 33 H 0.118 0.882 34 H 0.137 0.863 35 H 0.123 0.877 36 H 0.144 0.856 37 H 0.121 0.879 38 H 0.071 0.929 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.726 -15.129 6.549 17.149 hybrid contribution -0.176 1.890 -1.769 2.595 sum 4.550 -13.238 4.780 14.792 Atomic orbital electron populations 1.70165 1.07854 1.28757 1.48528 1.26469 0.96770 1.02479 0.95834 0.84596 0.78293 0.75268 0.78536 1.17635 1.19535 1.19373 1.21801 0.92425 0.81358 1.53239 0.88187 1.83942 1.35755 1.12458 1.80975 1.19827 0.91280 0.88107 0.93897 1.21328 0.93425 0.99964 1.10380 1.21040 1.00113 0.91340 0.96184 1.20804 0.93721 0.97385 1.08200 1.20203 0.93920 0.94316 1.00407 1.20994 0.98908 0.82134 0.82433 0.84632 1.46831 1.42683 1.33575 1.14068 1.20618 0.77710 0.80982 0.88222 1.90752 1.49240 1.28379 1.73937 1.23039 0.94556 0.98493 0.93425 0.87445 1.23104 1.07435 0.97840 0.91106 1.87055 1.40272 1.53129 1.24540 1.23650 0.98219 0.99734 0.99770 1.22218 1.03497 0.93345 0.88349 1.64219 1.26484 1.29010 1.03581 1.20133 0.99943 0.89399 1.09177 0.91805 0.86356 0.84345 0.86053 0.72934 0.88185 0.86264 0.87727 0.85582 0.87933 0.92866 0.85611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.28 13.67 21.61 0.30 -52.99 16 2 C -0.02 -0.93 5.49 84.83 0.47 -0.46 16 3 Si 1.01 40.78 29.55 68.60 2.03 42.81 16 4 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 5 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 6 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 7 C -0.41 -22.49 9.49 67.92 0.64 -21.84 16 8 H 0.10 5.03 5.22 -2.91 -0.02 5.02 16 9 O -0.23 -12.42 9.76 -22.79 -0.22 -12.64 16 10 C 0.12 5.29 6.64 22.57 0.15 5.44 16 11 C -0.23 -9.12 9.16 22.39 0.21 -8.91 16 12 C -0.07 -2.15 10.04 22.25 0.22 -1.93 16 13 C -0.18 -5.10 7.87 22.30 0.18 -4.92 16 14 C -0.09 -2.35 3.82 -19.88 -0.08 -2.43 16 15 C 0.35 7.43 4.18 128.16 0.54 7.97 16 16 H 0.14 2.52 7.95 -2.39 -0.02 2.50 16 17 N -0.71 -14.88 5.89 -451.28 -2.66 -17.54 16 18 C 0.54 13.07 7.42 87.42 0.65 13.72 16 19 O -0.55 -16.56 17.93 -3.03 -0.05 -16.62 16 20 C 0.02 0.37 1.82 43.57 0.08 0.45 16 21 H 0.11 2.38 5.23 -2.39 -0.01 2.37 16 22 C -0.05 -0.88 6.18 71.82 0.44 -0.44 16 23 S -0.28 -5.43 22.38 -56.49 -1.26 -6.70 16 24 C -0.07 -1.08 6.65 72.30 0.48 -0.60 16 25 C 0.06 1.09 4.69 86.98 0.41 1.50 16 26 N -0.51 -10.09 4.81 -863.65 -4.16 -14.25 16 27 C -0.17 -5.86 9.62 22.39 0.22 -5.65 16 28 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.12 4.84 5.66 -2.91 -0.02 4.83 16 30 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 31 H 0.12 3.04 4.92 -2.91 -0.01 3.03 16 32 H 0.43 7.65 8.96 -92.71 -0.83 6.82 16 33 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.12 2.22 8.14 -2.38 -0.02 2.20 16 35 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.05 1.22 6.72 -2.38 -0.02 1.21 16 39 H 0.13 4.26 7.99 -2.91 -0.02 4.23 16 Total: -1.00 -66.45 328.10 -1.15 -67.60 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.28 Total: 28.42 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: 4.60 Total: -18.10 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -6.52 Total: -84.77 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.28 Total: -29.26 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Atomic # 16 Polarization: -5.43 SS G_CDS: -1.26 Total: -6.70 kcal Total: -66.45 -1.15 -67.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765518873.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.742 kcal (2) G-P(sol) polarization free energy of solvation -66.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds