Wall clock time and date at job start Tue Mar 31 2020 12:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00323 * 2 1 4 4 H 1.48503 * 109.47611 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47271 * 300.00288 * 3 2 1 6 6 H 1.48496 * 109.47355 * 60.00071 * 3 2 1 7 7 C 1.38810 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00151 * 163.17280 * 7 2 1 9 9 N 1.36934 * 120.00385 * 343.17004 * 7 2 1 10 10 C 1.46926 * 120.63630 * 151.92945 * 9 7 2 11 11 C 1.53191 * 108.89452 * 126.46229 * 10 9 7 12 12 C 1.53036 * 109.31166 * 54.56289 * 11 10 9 13 13 O 1.42902 * 109.46030 * 178.61383 * 12 11 10 14 14 C 1.34928 * 117.00404 * 210.00442 * 13 12 11 15 15 O 1.21651 * 119.99834 * 359.97438 * 14 13 12 16 16 C 1.46294 * 119.99961 * 180.02562 * 14 13 12 17 17 C 1.36226 * 125.71992 * 180.02562 * 16 14 13 18 18 C 1.42160 * 107.62074 * 179.97438 * 17 16 14 19 19 C 1.45602 * 140.77082 * 179.97438 * 18 17 16 20 20 C 1.31796 * 114.63725 * 179.97438 * 19 18 17 21 21 S 1.75354 * 111.25535 * 0.03297 * 20 19 18 22 22 C 1.38218 * 107.01289 * 359.97438 * 18 17 16 23 23 N 1.37442 * 108.18481 * 359.73850 * 22 18 17 24 24 H 0.97001 * 125.68729 * 180.27859 * 23 22 18 25 25 C 1.53043 * 109.54325 * 298.63432 * 12 11 10 26 26 C 1.46973 * 120.64920 * 331.74411 * 9 7 2 27 27 H 0.97000 * 119.99637 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.58277 * 6.60169 * 10 9 7 29 29 H 1.08996 * 109.58760 * 246.32206 * 10 9 7 30 30 H 1.09001 * 109.49711 * 174.51722 * 11 10 9 31 31 H 1.09005 * 109.49935 * 294.61446 * 11 10 9 32 32 H 1.09004 * 109.46344 * 58.65817 * 12 11 10 33 33 H 1.07991 * 126.18867 * 359.97438 * 17 16 14 34 34 H 1.08006 * 122.68136 * 359.97438 * 19 18 17 35 35 H 1.07999 * 124.37520 * 180.02562 * 20 19 18 36 36 H 1.08995 * 109.49931 * 181.32094 * 25 12 11 37 37 H 1.09003 * 109.49592 * 301.41534 * 25 12 11 38 38 H 1.09000 * 109.46458 * 113.75121 * 26 9 7 39 39 H 1.08992 * 109.71060 * 353.46784 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0555 -1.2222 -0.2713 9 7 1.3695 -2.3628 0.3423 10 6 1.8154 -3.6529 -0.2015 11 6 2.0655 -4.6207 0.9594 12 6 0.8080 -4.7055 1.8275 13 8 1.0268 -5.6322 2.8931 14 6 -0.0511 -6.2982 3.3568 15 8 -1.1471 -6.0963 2.8689 16 6 0.0979 -7.2622 4.4471 17 6 -0.9063 -7.9962 5.0025 18 6 -0.3352 -8.8033 6.0240 19 6 -0.7119 -9.7978 7.0185 20 6 0.2867 -10.2466 7.7523 21 16 1.8012 -9.4895 7.2962 22 6 1.0183 -8.5244 6.0504 23 7 1.2820 -7.5863 5.0811 24 1 2.1535 -7.2122 4.8778 25 6 0.4931 -3.3252 2.4087 26 6 0.2252 -2.3428 1.2643 27 1 -0.4849 0.8401 0.0004 28 1 2.7375 -3.5125 -0.7654 29 1 1.0448 -4.0593 -0.8565 30 1 2.3025 -5.6087 0.5647 31 1 2.8993 -4.2592 1.5612 32 1 -0.0311 -5.0435 1.2193 33 1 -1.9478 -7.9698 4.7182 34 1 -1.7283 -10.1404 7.1447 35 1 0.1853 -10.9851 8.5337 36 1 -0.3889 -3.3913 3.0456 37 1 1.3418 -2.9760 2.9969 38 1 -0.6769 -2.6412 0.7302 39 1 0.0957 -1.3385 1.6677 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770787092.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:50 Heat of formation + Delta-G solvation = -12.598358 kcal Electronic energy + Delta-G solvation = -23797.584622 eV Core-core repulsion = 20218.467888 eV Total energy + Delta-G solvation = -3579.116733 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.54187 -41.39557 -39.10339 -37.48829 -36.34335 -34.61875 -32.18052 -31.67727 -31.58069 -29.86707 -27.24533 -25.32055 -24.05165 -23.99085 -23.33597 -21.40363 -21.12749 -20.71098 -20.13398 -18.91897 -18.46078 -17.53292 -17.22814 -16.82413 -16.01919 -15.82846 -15.69022 -15.54146 -15.43973 -15.03691 -14.74488 -14.68394 -14.51177 -14.17128 -13.82100 -13.30307 -13.12097 -12.97633 -12.85491 -12.67298 -12.64232 -12.42532 -12.16607 -12.04944 -11.95854 -11.83447 -11.76898 -11.46908 -11.12032 -10.66025 -10.59157 -9.37244 -8.78671 -8.71491 -7.92504 -5.39031 -0.09994 0.02794 0.38747 1.05306 1.39369 1.46168 1.47514 1.58200 1.58709 2.08361 2.11033 2.48461 3.23869 3.46214 3.57732 3.72233 3.75319 3.81783 3.93485 4.10440 4.28446 4.33952 4.53077 4.57460 4.65638 4.73490 4.74584 4.84513 4.91079 5.02445 5.10768 5.18849 5.20740 5.29134 5.37382 5.40783 5.57000 5.58879 5.63156 6.08891 6.33848 6.52408 7.08009 7.77377 8.30371 9.15522 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.030707 B = 0.002409 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.626395 B =11619.860912 C =11822.547293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.970 3.030 4 H -0.263 1.263 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.263 4.263 8 H 0.074 0.926 9 N -0.611 5.611 10 C 0.143 3.857 11 C -0.113 4.113 12 C 0.105 3.895 13 O -0.345 6.345 14 C 0.532 3.468 15 O -0.521 6.521 16 C -0.010 4.010 17 C -0.063 4.063 18 C -0.183 4.183 19 C -0.084 4.084 20 C -0.209 4.209 21 S 0.162 5.838 22 C -0.014 4.014 23 N -0.510 5.510 24 H 0.436 0.564 25 C -0.142 4.142 26 C 0.184 3.816 27 H 0.251 0.749 28 H 0.075 0.925 29 H 0.019 0.981 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.165 0.835 34 H 0.168 0.832 35 H 0.205 0.795 36 H 0.055 0.945 37 H 0.066 0.934 38 H -0.003 1.003 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.611 -22.887 16.518 28.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.393 4.393 8 H 0.092 0.908 9 N -0.334 5.334 10 C 0.017 3.983 11 C -0.152 4.152 12 C 0.050 3.950 13 O -0.261 6.261 14 C 0.378 3.622 15 O -0.410 6.410 16 C -0.121 4.121 17 C -0.090 4.090 18 C -0.195 4.195 19 C -0.114 4.114 20 C -0.343 4.343 21 S 0.415 5.585 22 C -0.244 4.244 23 N -0.114 5.114 24 H 0.277 0.723 25 C -0.181 4.181 26 C 0.057 3.943 27 H 0.060 0.940 28 H 0.093 0.907 29 H 0.037 0.963 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.183 0.817 34 H 0.185 0.815 35 H 0.222 0.778 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.016 0.984 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.781 -22.702 16.734 28.606 hybrid contribution -1.241 1.741 -1.053 2.383 sum 3.540 -20.962 15.681 26.416 Atomic orbital electron populations 1.70194 1.06857 1.25977 1.55295 1.25885 0.96059 1.01816 1.01042 0.85169 0.78744 0.79571 0.76720 1.18709 1.21902 1.21799 1.19584 0.93033 0.85639 1.41027 0.90821 1.44378 1.35702 1.02785 1.50555 1.21054 0.98503 0.85289 0.93412 1.22058 0.95487 1.00889 0.96758 1.22322 1.00126 0.86488 0.86073 1.86169 1.37136 1.52048 1.50774 1.20043 0.82666 0.78495 0.80971 1.90921 1.27536 1.64679 1.57891 1.18739 0.87345 1.05183 1.00864 1.20983 0.98979 0.94426 0.94653 1.19706 0.91915 1.04818 1.03065 1.20542 1.01774 0.95408 0.93646 1.25358 0.94083 1.07652 1.07161 1.84015 1.08962 1.37137 1.28358 1.24163 0.99728 1.00426 1.00081 1.41364 1.09587 1.33167 1.27233 0.72282 1.22456 1.01018 0.95169 0.99449 1.20471 0.88147 0.97234 0.88405 0.94010 0.90702 0.96350 0.88924 0.90726 0.91473 0.81716 0.81469 0.77815 0.92624 0.91537 0.98448 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.17 11.20 21.65 0.24 -55.93 16 2 C -0.05 -2.95 4.92 84.86 0.42 -2.54 16 3 Si 0.97 44.79 29.59 68.60 2.03 46.82 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 7 C -0.26 -14.36 9.58 84.03 0.81 -13.55 16 8 H 0.07 3.85 7.88 -2.91 -0.02 3.83 16 9 N -0.61 -30.86 3.00 -699.01 -2.10 -32.96 16 10 C 0.14 5.80 6.51 86.36 0.56 6.36 16 11 C -0.11 -3.74 5.73 30.67 0.18 -3.57 16 12 C 0.10 3.78 2.37 30.62 0.07 3.85 16 13 O -0.34 -10.89 9.77 -58.44 -0.57 -11.46 16 14 C 0.53 16.89 7.87 69.92 0.55 17.44 16 15 O -0.52 -19.58 16.09 19.34 0.31 -19.27 16 16 C -0.01 -0.26 7.00 39.77 0.28 0.02 16 17 C -0.06 -1.48 10.58 22.77 0.24 -1.24 16 18 C -0.18 -3.71 6.80 -20.41 -0.14 -3.85 16 19 C -0.08 -1.15 10.42 23.41 0.24 -0.91 16 20 C -0.21 -2.15 11.03 67.06 0.74 -1.41 16 21 S 0.16 2.10 23.24 -56.49 -1.31 0.78 16 22 C -0.01 -0.27 8.41 83.81 0.71 0.44 16 23 N -0.51 -10.72 6.20 -179.08 -1.11 -11.83 16 24 H 0.44 7.45 8.96 -92.71 -0.83 6.62 16 25 C -0.14 -5.81 5.70 30.67 0.17 -5.63 16 26 C 0.18 9.24 5.30 86.35 0.46 9.70 16 27 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 28 H 0.07 2.85 7.93 -2.39 -0.02 2.83 16 29 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 32 H 0.07 2.63 7.11 -2.39 -0.02 2.62 16 33 H 0.17 3.56 8.06 -2.92 -0.02 3.54 16 34 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 35 H 0.20 0.68 8.06 -2.91 -0.02 0.66 16 36 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 39 H 0.06 3.49 6.07 -2.39 -0.01 3.47 16 Total: -1.00 -68.87 341.93 3.04 -65.83 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.26 Total: 12.92 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 5.29 Total: 5.10 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -2.96 Total: -100.72 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.26 Total: -30.73 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -1.31 Total: 0.78 kcal Total: -68.87 3.04 -65.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770787092.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.234 kcal (2) G-P(sol) polarization free energy of solvation -68.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds