Wall clock time and date at job start Tue Mar 31 2020 12:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86803 * 119.99801 * 2 1 4 4 H 1.48500 * 109.46860 * 270.00072 * 3 2 1 5 5 H 1.48499 * 109.47281 * 30.00075 * 3 2 1 6 6 H 1.48495 * 109.46772 * 150.00256 * 3 2 1 7 7 C 1.37872 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99721 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00172 * 179.97438 * 7 2 1 10 10 N 1.46499 * 109.47441 * 179.97438 * 9 7 2 11 11 C 1.34772 * 120.00337 * 180.02562 * 10 9 7 12 12 O 1.21592 * 119.99907 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00546 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00636 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47474 * 179.97438 * 14 13 11 16 16 H 1.09007 * 109.47092 * 59.99812 * 15 14 13 17 17 O 1.42904 * 109.47248 * 300.00143 * 15 14 13 18 18 C 1.50701 * 109.47368 * 180.02562 * 15 14 13 19 19 C 1.31823 * 124.29516 * 265.00073 * 18 15 14 20 20 C 1.45389 * 114.89078 * 179.72397 * 19 18 15 21 21 C 1.41173 * 129.34215 * 180.26704 * 20 19 18 22 22 C 1.36088 * 120.45886 * 180.02562 * 21 20 19 23 23 C 1.38850 * 120.59128 * 359.97438 * 22 21 20 24 24 C 1.37460 * 120.18795 * 0.02562 * 23 22 21 25 25 C 1.39739 * 111.82897 * 0.27659 * 20 19 18 26 26 S 1.75300 * 124.30043 * 85.15381 * 18 15 14 27 27 H 0.97004 * 119.99678 * 0.02562 * 1 2 3 28 28 H 1.09010 * 109.47443 * 59.99480 * 9 7 2 29 29 H 1.08999 * 109.46995 * 300.00094 * 9 7 2 30 30 H 0.96995 * 119.99755 * 359.97438 * 10 9 7 31 31 H 0.97006 * 119.99657 * 359.97438 * 13 11 10 32 32 H 1.09007 * 109.46597 * 59.99872 * 14 13 11 33 33 H 1.09000 * 109.46791 * 300.00466 * 14 13 11 34 34 H 0.96699 * 113.99914 * 299.99886 * 17 15 14 35 35 H 1.08002 * 122.55881 * 0.02562 * 19 18 15 36 36 H 1.08007 * 119.76505 * 0.02562 * 21 20 19 37 37 H 1.08010 * 119.70387 * 180.02562 * 22 21 20 38 38 H 1.07997 * 119.90388 * 179.97438 * 23 22 21 39 39 H 1.08002 * 119.90873 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 5.3250 -2.8215 -0.0009 12 8 6.1151 -1.8973 -0.0014 13 7 5.7743 -4.0921 -0.0003 14 6 7.2146 -4.3599 -0.0008 15 6 7.4524 -5.8712 0.0007 16 1 7.0008 -6.3111 -0.8885 17 8 6.8617 -6.4453 1.1685 18 6 8.9341 -6.1467 0.0009 19 6 9.6469 -6.3768 -1.0839 20 6 11.0620 -6.6121 -0.8477 21 6 12.0918 -6.8801 -1.7755 22 6 13.3699 -7.0746 -1.3504 23 6 13.6823 -7.0122 0.0010 24 6 12.6995 -6.7528 0.9264 25 6 11.3793 -6.5501 0.5118 26 16 9.9278 -6.2054 1.4438 27 1 -0.4850 0.8401 -0.0004 28 1 3.8753 -0.6803 0.8889 29 1 3.8745 -0.6800 -0.8911 30 1 3.3696 -3.3125 -0.0002 31 1 5.1439 -4.8295 0.0005 32 1 7.6661 -3.9205 0.8888 33 1 7.6653 -3.9216 -0.8913 34 1 7.2164 -6.0998 1.9991 35 1 9.2136 -6.3849 -2.0732 36 1 11.8635 -6.9312 -2.8299 37 1 14.1483 -7.2784 -2.0709 38 1 14.7003 -7.1686 0.3261 39 1 12.9475 -6.7057 1.9765 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787371447.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:27 Heat of formation + Delta-G solvation = -62.726957 kcal Electronic energy + Delta-G solvation = -22744.603288 eV Core-core repulsion = 19163.312816 eV Total energy + Delta-G solvation = -3581.290473 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.04604 -40.47601 -39.06786 -36.23877 -36.02320 -35.32715 -34.36710 -31.96457 -31.66830 -30.06888 -28.40002 -25.16543 -24.37645 -23.77200 -22.75941 -22.02222 -21.44239 -19.96621 -19.16838 -18.42440 -17.95249 -17.36014 -17.04222 -16.65586 -16.37723 -16.27702 -15.90260 -15.60706 -15.29609 -15.10758 -14.74726 -14.64585 -14.60489 -14.37422 -14.29920 -13.81358 -13.47721 -13.03522 -12.91934 -12.69161 -12.63159 -12.23230 -11.95583 -11.92144 -11.65987 -11.59710 -11.54705 -11.31008 -10.90968 -10.66462 -10.37016 -9.69018 -9.48932 -8.73807 -8.38938 -6.45812 -0.33728 0.26464 0.41314 0.90933 1.19068 1.34321 1.36107 1.49612 1.81413 2.18255 2.29651 2.74795 2.96482 3.20099 3.24307 3.58050 3.66135 3.81156 3.97734 4.04775 4.12435 4.37184 4.40854 4.57064 4.66803 4.72753 4.78471 4.79263 4.96132 5.03848 5.05797 5.25576 5.32145 5.41704 5.43924 5.52623 5.54589 5.92385 5.96235 6.27072 6.40875 6.56373 7.14154 7.25113 7.64051 8.75706 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.030496 B = 0.002128 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.927451 B =13154.150099 C =13442.552053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.026 3.974 3 Si 0.938 3.062 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.251 3.749 10 N -0.721 5.721 11 C 0.695 3.305 12 O -0.645 6.645 13 N -0.727 5.727 14 C 0.116 3.884 15 C 0.183 3.817 16 H 0.143 0.857 17 O -0.551 6.551 18 C -0.202 4.202 19 C -0.105 4.105 20 C -0.100 4.100 21 C -0.086 4.086 22 C -0.121 4.121 23 C -0.100 4.100 24 C -0.102 4.102 25 C -0.157 4.157 26 S 0.086 5.914 27 H 0.272 0.728 28 H 0.010 0.990 29 H 0.010 0.990 30 H 0.406 0.594 31 H 0.413 0.587 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.384 0.616 35 H 0.167 0.833 36 H 0.146 0.854 37 H 0.156 0.844 38 H 0.158 0.842 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.348 -19.443 -1.236 34.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.174 4.174 3 Si 0.762 3.238 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.078 0.922 9 C 0.127 3.873 10 N -0.374 5.374 11 C 0.395 3.605 12 O -0.528 6.528 13 N -0.385 5.385 14 C -0.009 4.009 15 C 0.121 3.879 16 H 0.161 0.839 17 O -0.357 6.357 18 C -0.319 4.319 19 C -0.135 4.135 20 C -0.108 4.108 21 C -0.106 4.106 22 C -0.141 4.141 23 C -0.120 4.120 24 C -0.124 4.124 25 C -0.272 4.272 26 S 0.351 5.649 27 H 0.082 0.918 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.241 0.759 31 H 0.250 0.750 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.233 0.767 35 H 0.185 0.815 36 H 0.164 0.836 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 28.139 -18.616 -0.124 33.740 hybrid contribution -0.085 0.475 -0.935 1.052 sum 28.054 -18.140 -1.059 33.425 Atomic orbital electron populations 1.69987 1.07650 1.28609 1.50715 1.25594 0.95569 1.02681 0.93604 0.85842 0.79215 0.79251 0.79488 1.18918 1.19774 1.18532 1.21277 0.89887 0.94619 1.52600 0.92245 1.18954 0.93036 0.79777 0.95534 1.45099 1.04588 1.09971 1.77769 1.16181 0.82723 0.83709 0.77895 1.90842 1.56214 1.45032 1.60680 1.44713 1.08177 1.05325 1.80271 1.21857 0.80368 0.95808 1.02911 1.20546 0.85493 0.90620 0.91228 0.83946 1.86627 1.65588 1.67403 1.16094 1.24607 1.00151 1.09639 0.97460 1.21122 0.91528 1.00669 1.00217 1.19564 0.94136 1.04243 0.92825 1.21075 0.91899 0.97897 0.99693 1.21139 0.96761 0.99503 0.96725 1.21481 1.00025 0.97592 0.92946 1.20803 0.89664 1.00782 1.01185 1.22997 0.98783 1.08404 0.97007 1.83988 0.97109 1.75897 1.07874 0.91836 0.97208 0.97202 0.75921 0.74996 0.92252 0.90896 0.76702 0.81519 0.83587 0.82625 0.82455 0.84376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.93 13.96 21.45 0.30 -55.63 16 2 C 0.03 1.47 5.47 84.65 0.46 1.94 16 3 Si 0.94 44.56 27.47 68.60 1.88 46.44 16 4 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.26 -12.36 6.54 99.48 0.65 -11.71 16 7 C -0.55 -30.53 9.83 25.60 0.25 -30.28 16 8 H 0.06 3.48 7.84 -2.91 -0.02 3.46 16 9 C 0.25 12.63 4.50 85.63 0.38 13.01 16 10 N -0.72 -29.76 5.55 -482.30 -2.68 -32.44 16 11 C 0.70 27.19 8.57 179.06 1.53 28.72 16 12 O -0.64 -30.73 16.34 -4.01 -0.07 -30.79 16 13 N -0.73 -19.84 5.45 -478.54 -2.61 -22.45 16 14 C 0.12 2.69 5.32 86.38 0.46 3.15 16 15 C 0.18 3.12 3.46 29.85 0.10 3.23 16 16 H 0.14 1.97 8.12 -2.38 -0.02 1.95 16 17 O -0.55 -9.99 12.97 -148.98 -1.93 -11.93 16 18 C -0.20 -3.60 5.41 24.90 0.13 -3.46 16 19 C -0.11 -1.76 10.20 23.33 0.24 -1.52 16 20 C -0.10 -1.77 6.04 -20.35 -0.12 -1.89 16 21 C -0.09 -1.14 10.05 22.49 0.23 -0.92 16 22 C -0.12 -1.26 9.95 21.92 0.22 -1.04 16 23 C -0.10 -1.07 10.03 22.23 0.22 -0.85 16 24 C -0.10 -1.49 10.07 22.48 0.23 -1.27 16 25 C -0.16 -2.91 6.48 23.03 0.15 -2.76 16 26 S 0.09 1.56 22.30 -56.49 -1.26 0.30 16 27 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 28 H 0.01 0.53 7.20 -2.38 -0.02 0.51 16 29 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 30 H 0.41 14.61 8.33 -92.71 -0.77 13.84 16 31 H 0.41 9.08 8.36 -92.70 -0.78 8.30 16 32 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.38 5.85 8.31 -74.06 -0.62 5.24 16 35 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 36 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 37 H 0.16 0.70 8.06 -2.91 -0.02 0.67 16 38 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 39 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -74.55 350.78 -2.97 -77.52 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: -1.10 Total: 22.92 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 4.49 Total: 6.07 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -4.99 Total: -110.53 kcal Atomic # 8 Polarization: -40.72 SS G_CDS: -2.00 Total: -42.72 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.44 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -1.26 Total: 0.30 kcal Total: -74.55 -2.97 -77.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787371447.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.793 kcal (2) G-P(sol) polarization free energy of solvation -74.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds