Wall clock time and date at job start Tue Mar 31 2020 12:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99741 * 2 1 4 4 H 1.48494 * 109.47204 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47147 * 299.99732 * 3 2 1 6 6 H 1.48502 * 109.46925 * 59.99713 * 3 2 1 7 7 C 1.37869 * 120.00600 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00217 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99718 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47253 * 180.02562 * 9 7 2 11 11 C 1.42898 * 113.99894 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46820 * 179.97438 * 11 10 9 13 13 O 1.45199 * 109.46980 * 64.99994 * 12 11 10 14 14 C 1.34725 * 117.00089 * 179.97438 * 13 12 11 15 15 O 1.21485 * 119.99969 * 359.97438 * 14 13 12 16 16 C 1.47644 * 120.00261 * 179.72705 * 14 13 12 17 17 C 1.38523 * 119.77886 * 359.97438 * 16 14 13 18 18 C 1.40369 * 119.52032 * 179.97438 * 17 16 14 19 19 N 1.33836 * 120.89210 * 179.97438 * 18 17 16 20 20 C 1.31268 * 119.75278 * 179.97438 * 19 18 17 21 21 C 1.39752 * 120.68785 * 0.04300 * 20 19 18 22 22 N 1.31336 * 120.71830 * 359.97332 * 21 20 19 23 23 C 1.33836 * 119.76514 * 0.02562 * 22 21 20 24 24 C 1.40535 * 120.83120 * 179.97438 * 23 22 21 25 25 C 1.36061 * 120.08646 * 179.71795 * 24 23 22 26 26 F 1.35091 * 119.62581 * 180.27705 * 25 24 23 27 27 H 0.97003 * 120.00702 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47059 * 60.00329 * 9 7 2 29 29 H 1.09000 * 109.47289 * 300.00336 * 9 7 2 30 30 H 1.09005 * 109.47519 * 59.99948 * 11 10 9 31 31 H 1.08999 * 109.47239 * 299.99472 * 11 10 9 32 32 H 1.08997 * 109.47282 * 305.00172 * 12 11 10 33 33 H 1.09002 * 109.47256 * 184.99399 * 12 11 10 34 34 H 1.08001 * 120.24330 * 359.96505 * 17 16 14 35 35 H 1.07996 * 119.65896 * 180.02562 * 20 19 18 36 36 H 1.08001 * 119.63935 * 179.97438 * 21 20 19 37 37 H 1.08003 * 119.95652 * 0.03170 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1938 0.0010 9 6 1.2512 -2.4991 0.0005 10 8 2.1798 -3.5852 0.0017 11 6 1.5653 -4.8753 0.0013 12 6 2.6483 -5.9560 0.0020 13 8 3.3987 -5.8884 1.2432 14 6 4.3964 -6.7793 1.4042 15 8 4.6327 -7.5909 0.5315 16 6 5.2061 -6.7660 2.6387 17 6 4.9364 -5.8350 3.6283 18 6 5.7093 -5.8275 4.8000 19 7 5.4729 -4.9399 5.7735 20 6 6.2092 -4.9533 6.8601 21 6 7.2397 -5.8851 7.0120 22 7 7.4916 -6.7661 6.0711 23 6 6.7554 -6.7734 4.9534 24 6 7.0059 -7.7057 3.9321 25 6 6.2444 -7.7034 2.8046 26 9 6.4897 -8.6073 1.8311 27 1 -0.4851 0.8400 -0.0004 28 1 0.6249 -2.5571 -0.8898 29 1 0.6241 -2.5567 0.8902 30 1 0.9461 -4.9826 -0.8894 31 1 0.9442 -4.9823 0.8906 32 1 3.3225 -5.7954 -0.8393 33 1 2.1825 -6.9374 -0.0878 34 1 4.1373 -5.1199 3.4993 35 1 6.0169 -4.2367 7.6448 36 1 7.8352 -5.8807 7.9129 37 1 7.8007 -8.4283 4.0446 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815241771.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:32 Heat of formation + Delta-G solvation = -102.117813 kcal Electronic energy + Delta-G solvation = -25306.712588 eV Core-core repulsion = 21157.500824 eV Total energy + Delta-G solvation = -4149.211764 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.100 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.31005 -41.85555 -40.38500 -37.65675 -36.98231 -36.08064 -35.30020 -32.80329 -31.80535 -30.86271 -30.02738 -27.03313 -26.34566 -24.96986 -23.08832 -22.95715 -22.35626 -21.57054 -19.55075 -18.87111 -17.87052 -17.34513 -16.79208 -16.73103 -16.42083 -16.08952 -15.92404 -15.52595 -15.30408 -15.22640 -14.77897 -14.63340 -14.33074 -13.87116 -13.62878 -13.31749 -13.06719 -12.66901 -12.48201 -12.20952 -12.12219 -11.99876 -11.90933 -11.48078 -10.99094 -10.90682 -10.79498 -10.59417 -10.46057 -10.07487 -9.61655 -9.48696 -9.13900 -9.05814 -8.91215 -8.24366 -6.13963 -4.15648 -0.54079 -0.14974 1.27898 1.68984 2.42652 2.67994 3.27776 3.29692 3.34356 3.40963 3.45778 3.50737 3.69321 3.76921 4.24867 4.29893 4.31882 4.52118 4.64742 4.69163 4.84279 4.98472 5.14519 5.16088 5.22893 5.29591 5.40642 5.51297 5.67567 5.81066 5.88003 5.99406 6.04834 6.39323 6.72811 7.02368 7.19380 7.37020 7.61615 7.76341 8.09947 8.48972 8.97136 9.49377 10.97599 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.011591 B = 0.003153 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.168749 B = 8876.974546 C =10746.075996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.076 3.924 13 O -0.333 6.333 14 C 0.507 3.493 15 O -0.492 6.492 16 C -0.140 4.140 17 C 0.030 3.970 18 C 0.050 3.950 19 N -0.400 5.400 20 C 0.072 3.928 21 C 0.101 3.899 22 N -0.432 5.432 23 C 0.124 3.876 24 C -0.139 4.139 25 C 0.179 3.821 26 F -0.106 7.106 27 H 0.264 0.736 28 H 0.006 0.994 29 H 0.008 0.992 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.175 0.825 35 H 0.182 0.818 36 H 0.181 0.819 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.241 -15.435 13.804 24.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.017 4.017 12 C 0.003 3.997 13 O -0.249 6.249 14 C 0.350 3.650 15 O -0.381 6.381 16 C -0.144 4.144 17 C 0.011 3.989 18 C -0.073 4.073 19 N -0.114 5.114 20 C -0.105 4.105 21 C -0.075 4.075 22 N -0.147 5.147 23 C 0.001 3.999 24 C -0.159 4.159 25 C 0.157 3.843 26 F -0.084 7.084 27 H 0.073 0.927 28 H 0.024 0.976 29 H 0.026 0.974 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.192 0.808 35 H 0.199 0.801 36 H 0.198 0.802 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 12.266 -15.637 13.227 23.873 hybrid contribution 0.061 0.718 -0.202 0.748 sum 12.327 -14.920 13.025 23.328 Atomic orbital electron populations 1.69964 1.06099 1.27118 1.50582 1.24941 0.94977 0.99450 0.95091 0.86286 0.80047 0.82557 0.77650 1.19470 1.20823 1.20786 1.21082 0.94139 0.89269 1.50788 0.91454 1.20249 0.88727 0.83465 0.95546 1.87920 1.35341 1.12593 1.95242 1.22338 0.93133 0.85427 1.00771 1.23325 0.93624 0.99139 0.83639 1.86619 1.42964 1.53177 1.42143 1.20599 0.79392 0.79047 0.85951 1.90898 1.67561 1.37439 1.42222 1.19285 0.99166 1.00245 0.95704 1.21619 0.95634 0.93873 0.87787 1.19470 0.96926 0.95213 0.95739 1.68738 1.24137 1.18631 0.99892 1.24206 0.92134 0.98230 0.95886 1.24290 0.95224 0.90068 0.97913 1.68762 1.24436 1.21425 1.00037 1.19232 0.92736 0.94653 0.93319 1.20455 1.02407 1.01539 0.91544 1.17061 0.93509 0.87425 0.86281 1.91647 1.92816 1.63652 1.60246 0.92666 0.97577 0.97443 0.91682 0.93046 0.90109 0.90045 0.80773 0.80090 0.80165 0.82152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -15.05 9.43 -34.44 -0.32 -15.38 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.19 5.24 5.69 36.01 0.20 5.44 16 10 O -0.39 -9.27 10.30 -38.81 -0.40 -9.67 16 11 C 0.06 1.08 6.33 37.16 0.24 1.31 16 12 C 0.08 1.17 5.85 37.16 0.22 1.38 16 13 O -0.33 -5.39 9.39 -43.34 -0.41 -5.79 16 14 C 0.51 7.74 7.89 34.57 0.27 8.02 16 15 O -0.49 -8.39 15.07 -19.25 -0.29 -8.68 16 16 C -0.14 -1.81 5.87 -104.96 -0.62 -2.43 16 17 C 0.03 0.37 9.58 -38.68 -0.37 0.00 16 18 C 0.05 0.58 6.58 -84.80 -0.56 0.02 16 19 N -0.40 -4.38 10.46 -10.81 -0.11 -4.49 16 20 C 0.07 0.50 11.21 -17.23 -0.19 0.31 16 21 C 0.10 0.63 11.21 -17.20 -0.19 0.44 16 22 N -0.43 -4.07 10.46 -10.75 -0.11 -4.18 16 23 C 0.12 1.33 6.59 -84.74 -0.56 0.78 16 24 C -0.14 -1.41 9.91 -39.50 -0.39 -1.80 16 25 C 0.18 2.12 7.21 -39.37 -0.28 1.84 16 26 F -0.11 -1.39 15.46 2.25 0.03 -1.36 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.17 2.16 7.57 -52.49 -0.40 1.76 16 35 H 0.18 0.56 8.06 -52.49 -0.42 0.13 16 36 H 0.18 0.34 8.06 -52.49 -0.42 -0.08 16 37 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 340.81 15.07 5.14 5.14 Total: -1.00 -35.09 340.81 -6.84 -41.93 By element: Atomic # 1 Polarization: -1.42 SS G_CDS: -3.75 Total: -5.16 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -2.66 Total: 1.45 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.51 Total: -34.54 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -1.10 Total: -24.15 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.03 Total: -1.36 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.09 -6.84 -41.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815241771.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.192 kcal (2) G-P(sol) polarization free energy of solvation -35.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds