Wall clock time and date at job start Tue Mar 31 2020 12:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99741 * 2 1 4 4 H 1.48494 * 109.47204 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47147 * 299.99732 * 3 2 1 6 6 H 1.48502 * 109.46925 * 59.99713 * 3 2 1 7 7 C 1.37869 * 120.00600 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00217 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99718 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47253 * 180.02562 * 9 7 2 11 11 C 1.42898 * 113.99894 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46820 * 179.97438 * 11 10 9 13 13 O 1.45199 * 109.46980 * 64.99994 * 12 11 10 14 14 C 1.34725 * 117.00089 * 179.97438 * 13 12 11 15 15 O 1.21485 * 119.99969 * 359.97438 * 14 13 12 16 16 C 1.47644 * 120.00261 * 179.72705 * 14 13 12 17 17 C 1.38523 * 119.77886 * 359.97438 * 16 14 13 18 18 C 1.40369 * 119.52032 * 179.97438 * 17 16 14 19 19 N 1.33836 * 120.89210 * 179.97438 * 18 17 16 20 20 C 1.31268 * 119.75278 * 179.97438 * 19 18 17 21 21 C 1.39752 * 120.68785 * 0.04300 * 20 19 18 22 22 N 1.31336 * 120.71830 * 359.97332 * 21 20 19 23 23 C 1.33836 * 119.76514 * 0.02562 * 22 21 20 24 24 C 1.40535 * 120.83120 * 179.97438 * 23 22 21 25 25 C 1.36061 * 120.08646 * 179.71795 * 24 23 22 26 26 F 1.35091 * 119.62581 * 180.27705 * 25 24 23 27 27 H 0.97003 * 120.00702 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47059 * 60.00329 * 9 7 2 29 29 H 1.09000 * 109.47289 * 300.00336 * 9 7 2 30 30 H 1.09005 * 109.47519 * 59.99948 * 11 10 9 31 31 H 1.08999 * 109.47239 * 299.99472 * 11 10 9 32 32 H 1.08997 * 109.47282 * 305.00172 * 12 11 10 33 33 H 1.09002 * 109.47256 * 184.99399 * 12 11 10 34 34 H 1.08001 * 120.24330 * 359.96505 * 17 16 14 35 35 H 1.07996 * 119.65896 * 180.02562 * 20 19 18 36 36 H 1.08001 * 119.63935 * 179.97438 * 21 20 19 37 37 H 1.08003 * 119.95652 * 0.03170 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1938 0.0010 9 6 1.2512 -2.4991 0.0005 10 8 2.1798 -3.5852 0.0017 11 6 1.5653 -4.8753 0.0013 12 6 2.6483 -5.9560 0.0020 13 8 3.3987 -5.8884 1.2432 14 6 4.3964 -6.7793 1.4042 15 8 4.6327 -7.5909 0.5315 16 6 5.2061 -6.7660 2.6387 17 6 4.9364 -5.8350 3.6283 18 6 5.7093 -5.8275 4.8000 19 7 5.4729 -4.9399 5.7735 20 6 6.2092 -4.9533 6.8601 21 6 7.2397 -5.8851 7.0120 22 7 7.4916 -6.7661 6.0711 23 6 6.7554 -6.7734 4.9534 24 6 7.0059 -7.7057 3.9321 25 6 6.2444 -7.7034 2.8046 26 9 6.4897 -8.6073 1.8311 27 1 -0.4851 0.8400 -0.0004 28 1 0.6249 -2.5571 -0.8898 29 1 0.6241 -2.5567 0.8902 30 1 0.9461 -4.9826 -0.8894 31 1 0.9442 -4.9823 0.8906 32 1 3.3225 -5.7954 -0.8393 33 1 2.1825 -6.9374 -0.0878 34 1 4.1373 -5.1199 3.4993 35 1 6.0169 -4.2367 7.6448 36 1 7.8352 -5.8807 7.9129 37 1 7.8007 -8.4283 4.0446 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815241771.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:31 Heat of formation + Delta-G solvation = -125.855909 kcal Electronic energy + Delta-G solvation = -25307.741949 eV Core-core repulsion = 21157.500824 eV Total energy + Delta-G solvation = -4150.241125 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.100 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.24499 -42.60043 -41.57648 -38.88674 -38.27257 -37.49050 -36.02076 -34.95621 -32.74217 -31.64391 -31.45863 -29.05816 -27.22269 -25.76915 -24.60382 -24.05690 -23.88590 -22.79425 -20.43993 -19.75354 -18.87892 -18.59178 -18.34332 -18.04134 -17.64271 -17.29915 -16.88142 -16.83145 -16.39836 -16.27360 -16.08486 -16.00968 -15.64189 -15.20302 -14.63207 -14.46825 -14.28681 -13.97655 -13.72279 -13.40407 -13.24922 -12.98383 -12.91912 -12.82257 -12.75162 -12.73148 -12.49136 -12.07121 -11.84170 -11.78570 -11.27588 -10.91026 -10.28985 -10.28434 -10.27946 -9.88026 -8.32990 -6.44946 -1.34135 -0.91415 0.48139 0.82819 1.29875 1.40005 1.41041 1.55731 1.68596 2.34008 2.54200 2.71801 2.74470 2.95766 2.98224 3.01067 3.04081 3.33888 3.65175 3.75704 3.87661 3.91327 4.08195 4.11072 4.35910 4.37833 4.41846 4.43690 4.51626 4.59937 4.67223 4.84892 5.00086 5.13761 5.18598 5.30635 5.53956 5.94543 6.07634 6.40268 6.49935 6.53941 6.78917 7.26734 8.79376 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.011591 B = 0.003153 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.168749 B = 8876.974546 C =10746.075996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.981 3.019 4 H -0.267 1.267 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.550 4.550 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.410 6.410 11 C 0.054 3.946 12 C 0.078 3.922 13 O -0.347 6.347 14 C 0.509 3.491 15 O -0.516 6.516 16 C -0.154 4.154 17 C 0.028 3.972 18 C 0.034 3.966 19 N -0.441 5.441 20 C 0.089 3.911 21 C 0.122 3.878 22 N -0.451 5.451 23 C 0.115 3.885 24 C -0.120 4.120 25 C 0.163 3.837 26 F -0.118 7.118 27 H 0.271 0.729 28 H -0.007 1.007 29 H -0.009 1.009 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.163 0.837 35 H 0.225 0.775 36 H 0.233 0.767 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.897 -14.798 16.219 25.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.077 0.923 9 C 0.133 3.867 10 O -0.330 6.330 11 C -0.023 4.023 12 C 0.005 3.995 13 O -0.263 6.263 14 C 0.354 3.646 15 O -0.406 6.406 16 C -0.157 4.157 17 C 0.009 3.991 18 C -0.087 4.087 19 N -0.155 5.155 20 C -0.088 4.088 21 C -0.054 4.054 22 N -0.165 5.165 23 C -0.007 4.007 24 C -0.140 4.140 25 C 0.141 3.859 26 F -0.096 7.096 27 H 0.080 0.920 28 H 0.011 0.989 29 H 0.009 0.991 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.132 0.868 34 H 0.181 0.819 35 H 0.241 0.759 36 H 0.249 0.751 37 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 13.906 -15.037 15.612 25.753 hybrid contribution -0.413 0.526 -0.691 0.962 sum 13.493 -14.510 14.921 24.804 Atomic orbital electron populations 1.70057 1.07624 1.28630 1.50454 1.25910 0.95960 1.03233 0.93896 0.85171 0.78577 0.77489 0.78384 1.19110 1.19587 1.19473 1.21406 0.94037 0.90974 1.52310 0.92307 1.19875 0.88528 0.84302 0.93959 1.87865 1.35558 1.14204 1.95354 1.22662 0.94311 0.83200 1.02139 1.23336 0.93122 0.99669 0.83354 1.86613 1.43499 1.53775 1.42398 1.20967 0.78942 0.78244 0.86461 1.90870 1.68204 1.38302 1.43214 1.19162 0.99876 1.01605 0.95083 1.21495 0.95717 0.93534 0.88386 1.19454 0.97354 0.96091 0.95832 1.68761 1.26111 1.19425 1.01210 1.25078 0.90579 0.98094 0.95091 1.25204 0.94296 0.87747 0.98195 1.68865 1.24601 1.22834 1.00192 1.19317 0.92775 0.94490 0.94136 1.20635 1.01777 1.01192 0.90422 1.17097 0.94199 0.87692 0.86917 1.91609 1.92986 1.64087 1.60899 0.91974 0.98945 0.99141 0.89645 0.92262 0.90624 0.86826 0.81945 0.75895 0.75069 0.80060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.35 13.29 21.44 0.28 -55.06 16 2 C 0.01 0.50 5.46 84.65 0.46 0.96 16 3 Si 0.98 44.37 29.54 68.60 2.03 46.39 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 7 C -0.55 -32.89 9.43 25.60 0.24 -32.65 16 8 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 9 C 0.21 11.61 5.69 71.24 0.41 12.02 16 10 O -0.41 -20.05 10.30 -145.56 -1.50 -21.55 16 11 C 0.05 1.92 6.33 71.98 0.46 2.38 16 12 C 0.08 2.44 5.85 71.98 0.42 2.86 16 13 O -0.35 -11.69 9.39 -53.68 -0.50 -12.19 16 14 C 0.51 16.33 7.89 70.31 0.55 16.89 16 15 O -0.52 -18.25 15.07 19.88 0.30 -17.95 16 16 C -0.15 -4.20 5.87 -20.08 -0.12 -4.32 16 17 C 0.03 0.73 9.58 22.86 0.22 0.95 16 18 C 0.03 0.79 6.58 40.26 0.27 1.06 16 19 N -0.44 -9.09 10.46 -188.10 -1.97 -11.06 16 20 C 0.09 0.92 11.21 85.14 0.95 1.87 16 21 C 0.12 0.99 11.21 85.13 0.95 1.95 16 22 N -0.45 -7.21 10.46 -187.92 -1.96 -9.17 16 23 C 0.12 2.35 6.59 40.30 0.27 2.62 16 24 C -0.12 -2.37 9.91 22.32 0.22 -2.15 16 25 C 0.16 3.98 7.21 22.41 0.16 4.14 16 26 F -0.12 -3.21 15.46 44.97 0.70 -2.52 16 27 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 28 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 29 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 30 H 0.09 2.72 8.14 -2.38 -0.02 2.70 16 31 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 34 H 0.16 4.41 7.57 -2.91 -0.02 4.39 16 35 H 0.22 0.23 8.06 -2.91 -0.02 0.21 16 36 H 0.23 -0.60 8.06 -2.91 -0.02 -0.62 16 37 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -78.30 340.81 3.95 -74.35 By element: Atomic # 1 Polarization: -0.92 SS G_CDS: 1.12 Total: 0.20 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 5.46 Total: 8.57 kcal Atomic # 7 Polarization: -71.65 SS G_CDS: -3.65 Total: -75.29 kcal Atomic # 8 Polarization: -49.99 SS G_CDS: -1.70 Total: -51.70 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.70 Total: -2.52 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -78.30 3.95 -74.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815241771.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.510 kcal (2) G-P(sol) polarization free energy of solvation -78.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds