Wall clock time and date at job start Tue Mar 31 2020 12:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00224 * 2 1 4 4 H 1.48504 * 109.47002 * 240.00147 * 3 2 1 5 5 H 1.48496 * 109.47155 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47126 * 119.99910 * 3 2 1 7 7 C 1.38818 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99746 * 156.23566 * 7 2 1 9 9 N 1.36935 * 120.00012 * 336.51279 * 7 2 1 10 10 C 1.46504 * 119.99762 * 342.81957 * 9 7 2 11 11 C 1.50702 * 109.46846 * 96.09923 * 10 9 7 12 12 O 1.20821 * 120.00176 * 359.97438 * 11 10 9 13 13 O 1.34228 * 119.99550 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00354 * 162.82463 * 9 7 2 15 15 C 1.50697 * 109.47509 * 89.99401 * 14 9 7 16 16 N 1.30347 * 125.48219 * 89.69643 * 15 14 9 17 17 C 1.34147 * 108.90449 * 179.83984 * 16 15 14 18 18 C 1.35767 * 107.51840 * 0.42424 * 17 16 15 19 19 C 1.47832 * 126.58677 * 179.75159 * 18 17 16 20 20 C 1.39577 * 120.11801 * 359.74333 * 19 18 17 21 21 C 1.37922 * 119.87757 * 179.71931 * 20 19 18 22 22 C 1.38582 * 120.12124 * 0.56269 * 21 20 19 23 23 F 1.35096 * 119.88056 * 179.69305 * 22 21 20 24 24 C 1.38576 * 120.23614 * 359.71309 * 22 21 20 25 25 C 1.37922 * 120.11958 * 0.02562 * 24 22 21 26 26 O 1.34017 * 125.48415 * 270.00679 * 15 14 9 27 27 H 0.97002 * 119.99743 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47126 * 216.09674 * 10 9 7 29 29 H 1.08993 * 109.47366 * 336.09764 * 10 9 7 30 30 H 0.96705 * 116.99825 * 180.02562 * 13 11 10 31 31 H 1.09001 * 109.47574 * 210.00082 * 14 9 7 32 32 H 1.09007 * 109.46502 * 329.99550 * 14 9 7 33 33 H 1.08005 * 126.24427 * 180.17534 * 17 16 15 34 34 H 1.07998 * 120.05613 * 359.97438 * 20 19 18 35 35 H 1.08003 * 119.94094 * 180.24898 * 21 20 19 36 36 H 1.07995 * 119.93925 * 179.97438 * 24 22 21 37 37 H 1.08005 * 120.05909 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0215 -1.2417 -0.3775 9 7 1.4106 -2.3392 0.4716 10 6 0.2130 -2.2417 1.3097 11 6 -1.0150 -2.4099 0.4525 12 8 -0.9015 -2.5920 -0.7365 13 8 -2.2349 -2.3574 1.0100 14 6 1.9667 -3.6530 0.1387 15 6 2.9743 -4.0520 1.1858 16 7 2.7100 -4.7155 2.2762 17 6 3.8480 -4.8920 2.9642 18 6 4.8467 -4.2993 2.2611 19 6 6.2744 -4.2375 2.6398 20 6 6.7092 -4.8226 3.8301 21 6 8.0433 -4.7671 4.1757 22 6 8.9495 -4.1218 3.3494 23 9 10.2541 -4.0650 3.6957 24 6 8.5222 -3.5342 2.1693 25 6 7.1913 -3.5885 1.8115 26 8 4.2854 -3.7768 1.1487 27 1 -0.4850 0.8401 -0.0004 28 1 0.2361 -3.0236 2.0688 29 1 0.1870 -1.2657 1.7942 30 1 -2.9926 -2.4711 0.4199 31 1 1.1642 -4.3899 0.1072 32 1 2.4542 -3.6049 -0.8351 33 1 3.9503 -5.4077 3.9077 34 1 6.0030 -5.3215 4.4772 35 1 8.3815 -5.2230 5.0945 36 1 9.2324 -3.0322 1.5292 37 1 6.8594 -3.1306 0.8913 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833067028.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:18 Heat of formation + Delta-G solvation = -58.930341 kcal Electronic energy + Delta-G solvation = -25889.311101 eV Core-core repulsion = 21741.972086 eV Total energy + Delta-G solvation = -4147.339015 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.100 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.11196 -42.84637 -39.05993 -38.79730 -36.01668 -34.53131 -34.32877 -32.52766 -31.52769 -31.41068 -29.12416 -27.41941 -26.01364 -23.67258 -23.26937 -22.44197 -21.36145 -20.75015 -20.04704 -18.07022 -17.25503 -16.96627 -16.79262 -16.35102 -16.25092 -15.90226 -15.78931 -15.18843 -15.11495 -14.37832 -14.22745 -13.87948 -13.75061 -13.57158 -13.54192 -13.28900 -13.11912 -12.67359 -12.35353 -11.83869 -11.61319 -11.25184 -11.20434 -11.07482 -10.91718 -10.75174 -10.34065 -10.19755 -10.15846 -10.08001 -9.64046 -9.40476 -9.35368 -8.74114 -7.85718 -7.36092 -6.10297 -3.46119 0.49473 0.98300 2.02022 2.90631 3.02322 3.28886 3.35170 3.37149 3.51570 3.78865 4.00282 4.19387 4.40612 4.45446 4.51963 4.60328 4.76370 4.96968 5.04362 5.15042 5.22743 5.28450 5.57963 5.66411 5.82267 5.85448 5.89547 6.06624 6.17938 6.23753 6.33518 6.44181 6.58782 6.66187 6.80219 6.85104 7.55540 7.76571 7.94839 8.15691 8.81198 9.31430 9.49322 9.88719 11.00323 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.016197 B = 0.003365 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.288403 B = 8319.946975 C = 9589.274736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.013 3.987 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.276 4.276 8 H 0.084 0.916 9 N -0.548 5.548 10 C 0.185 3.815 11 C 0.481 3.519 12 O -0.513 6.513 13 O -0.541 6.541 14 C 0.226 3.774 15 C 0.220 3.780 16 N -0.498 5.498 17 C -0.010 4.010 18 C -0.042 4.042 19 C -0.004 4.004 20 C -0.076 4.076 21 C -0.148 4.148 22 C 0.094 3.906 23 F -0.141 7.141 24 C -0.147 4.147 25 C -0.075 4.075 26 O -0.189 6.189 27 H 0.261 0.739 28 H 0.064 0.936 29 H 0.112 0.888 30 H 0.384 0.616 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.178 0.822 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.734 -9.163 7.195 15.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.187 4.187 3 Si 0.740 3.260 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.404 4.404 8 H 0.101 0.899 9 N -0.266 5.266 10 C 0.056 3.944 11 C 0.321 3.679 12 O -0.399 6.399 13 O -0.352 6.352 14 C 0.096 3.904 15 C 0.011 3.989 16 N -0.226 5.226 17 C -0.151 4.151 18 C -0.096 4.096 19 C -0.005 4.005 20 C -0.094 4.094 21 C -0.166 4.166 22 C 0.075 3.925 23 F -0.119 7.119 24 C -0.166 4.166 25 C -0.094 4.094 26 O -0.075 6.075 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.130 0.870 30 H 0.239 0.761 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.196 0.804 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.157 0.843 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.437 -9.136 7.210 15.633 hybrid contribution 0.758 1.245 -0.510 1.544 sum 11.195 -7.891 6.700 15.248 Atomic orbital electron populations 1.69907 1.05403 1.26502 1.51752 1.24880 0.95183 0.98743 0.99883 0.86226 0.78994 0.82422 0.78361 1.20587 1.21426 1.20760 1.19247 0.96506 0.84871 1.39780 0.89856 1.43867 1.26041 1.00745 1.55932 1.20233 0.81041 1.03033 0.90048 1.24930 0.83751 0.70219 0.89044 1.90517 1.86492 1.45581 1.17293 1.84606 1.17492 1.86301 1.46786 1.19398 0.90839 0.89322 0.90888 1.29165 0.80283 0.92125 0.97279 1.70404 1.28255 1.18710 1.05251 1.23250 0.87604 1.02840 1.01423 1.21148 0.93789 1.04829 0.89821 1.17687 0.87809 0.99738 0.95227 1.20879 0.95098 0.98344 0.95085 1.20991 0.92802 1.02019 1.00822 1.17811 0.78286 1.00911 0.95531 1.91497 1.33606 1.94712 1.92097 1.21086 0.96968 1.02047 0.96479 1.21212 0.91607 0.96849 0.99687 1.84534 1.23917 1.60613 1.38447 0.92865 0.91848 0.87000 0.76051 0.89070 0.89489 0.80449 0.84324 0.84197 0.84298 0.84142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.37 9.38 55.49 0.52 -23.85 16 2 C 0.01 0.34 4.81 -17.43 -0.08 0.25 16 3 Si 0.91 20.89 29.62 -169.99 -5.03 15.86 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.28 -7.10 9.64 -15.06 -0.15 -7.24 16 8 H 0.08 2.10 7.93 -52.49 -0.42 1.69 16 9 N -0.55 -12.84 2.01 -175.99 -0.35 -13.20 16 10 C 0.19 4.21 5.49 -5.19 -0.03 4.18 16 11 C 0.48 11.12 6.54 36.01 0.24 11.35 16 12 O -0.51 -13.39 16.81 -18.75 -0.32 -13.71 16 13 O -0.54 -10.60 13.42 -39.25 -0.53 -11.12 16 14 C 0.23 4.49 6.26 -5.20 -0.03 4.46 16 15 C 0.22 4.16 7.91 -12.91 -0.10 4.06 16 16 N -0.50 -9.04 11.27 -10.82 -0.12 -9.16 16 17 C -0.01 -0.16 11.29 -17.42 -0.20 -0.36 16 18 C -0.04 -0.66 7.07 -36.54 -0.26 -0.91 16 19 C 0.00 -0.05 5.87 -104.97 -0.62 -0.66 16 20 C -0.08 -0.76 9.57 -39.20 -0.38 -1.14 16 21 C -0.15 -1.38 10.01 -39.57 -0.40 -1.77 16 22 C 0.09 0.99 7.30 -39.33 -0.29 0.70 16 23 F -0.14 -1.53 17.26 2.25 0.04 -1.49 16 24 C -0.15 -1.55 10.01 -39.57 -0.40 -1.94 16 25 C -0.08 -0.91 9.73 -39.20 -0.38 -1.29 16 26 O -0.19 -3.45 10.59 4.18 0.04 -3.40 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.06 1.30 8.12 -51.93 -0.42 0.88 16 29 H 0.11 2.75 6.46 -51.93 -0.34 2.42 16 30 H 0.38 5.87 9.10 45.56 0.41 6.29 16 31 H 0.09 1.71 8.07 -51.93 -0.42 1.29 16 32 H 0.09 1.66 8.04 -51.92 -0.42 1.24 16 33 H 0.18 1.99 7.30 -52.48 -0.38 1.61 16 34 H 0.14 1.06 7.04 -52.49 -0.37 0.69 16 35 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 36 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.14 1.69 7.94 -52.48 -0.42 1.27 16 LS Contribution 337.60 15.07 5.09 5.09 Total: -1.00 -31.78 337.60 -6.47 -38.25 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -2.75 Total: 7.06 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: -3.06 Total: 9.69 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 0.04 Total: -46.21 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.80 Total: -28.24 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.78 -6.47 -38.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067028.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.684 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds