Wall clock time and date at job start Tue Mar 31 2020 12:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00224 * 2 1 4 4 H 1.48504 * 109.47002 * 240.00147 * 3 2 1 5 5 H 1.48496 * 109.47155 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47126 * 119.99910 * 3 2 1 7 7 C 1.38818 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99746 * 156.23566 * 7 2 1 9 9 N 1.36935 * 120.00012 * 336.51279 * 7 2 1 10 10 C 1.46504 * 119.99762 * 342.81957 * 9 7 2 11 11 C 1.50702 * 109.46846 * 96.09923 * 10 9 7 12 12 O 1.20821 * 120.00176 * 359.97438 * 11 10 9 13 13 O 1.34228 * 119.99550 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00354 * 162.82463 * 9 7 2 15 15 C 1.50697 * 109.47509 * 89.99401 * 14 9 7 16 16 N 1.30347 * 125.48219 * 89.69643 * 15 14 9 17 17 C 1.34147 * 108.90449 * 179.83984 * 16 15 14 18 18 C 1.35767 * 107.51840 * 0.42424 * 17 16 15 19 19 C 1.47832 * 126.58677 * 179.75159 * 18 17 16 20 20 C 1.39577 * 120.11801 * 359.74333 * 19 18 17 21 21 C 1.37922 * 119.87757 * 179.71931 * 20 19 18 22 22 C 1.38582 * 120.12124 * 0.56269 * 21 20 19 23 23 F 1.35096 * 119.88056 * 179.69305 * 22 21 20 24 24 C 1.38576 * 120.23614 * 359.71309 * 22 21 20 25 25 C 1.37922 * 120.11958 * 0.02562 * 24 22 21 26 26 O 1.34017 * 125.48415 * 270.00679 * 15 14 9 27 27 H 0.97002 * 119.99743 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47126 * 216.09674 * 10 9 7 29 29 H 1.08993 * 109.47366 * 336.09764 * 10 9 7 30 30 H 0.96705 * 116.99825 * 180.02562 * 13 11 10 31 31 H 1.09001 * 109.47574 * 210.00082 * 14 9 7 32 32 H 1.09007 * 109.46502 * 329.99550 * 14 9 7 33 33 H 1.08005 * 126.24427 * 180.17534 * 17 16 15 34 34 H 1.07998 * 120.05613 * 359.97438 * 20 19 18 35 35 H 1.08003 * 119.94094 * 180.24898 * 21 20 19 36 36 H 1.07995 * 119.93925 * 179.97438 * 24 22 21 37 37 H 1.08005 * 120.05909 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0215 -1.2417 -0.3775 9 7 1.4106 -2.3392 0.4716 10 6 0.2130 -2.2417 1.3097 11 6 -1.0150 -2.4099 0.4525 12 8 -0.9015 -2.5920 -0.7365 13 8 -2.2349 -2.3574 1.0100 14 6 1.9667 -3.6530 0.1387 15 6 2.9743 -4.0520 1.1858 16 7 2.7100 -4.7155 2.2762 17 6 3.8480 -4.8920 2.9642 18 6 4.8467 -4.2993 2.2611 19 6 6.2744 -4.2375 2.6398 20 6 6.7092 -4.8226 3.8301 21 6 8.0433 -4.7671 4.1757 22 6 8.9495 -4.1218 3.3494 23 9 10.2541 -4.0650 3.6957 24 6 8.5222 -3.5342 2.1693 25 6 7.1913 -3.5885 1.8115 26 8 4.2854 -3.7768 1.1487 27 1 -0.4850 0.8401 -0.0004 28 1 0.2361 -3.0236 2.0688 29 1 0.1870 -1.2657 1.7942 30 1 -2.9926 -2.4711 0.4199 31 1 1.1642 -4.3899 0.1072 32 1 2.4542 -3.6049 -0.8351 33 1 3.9503 -5.4077 3.9077 34 1 6.0030 -5.3215 4.4772 35 1 8.3815 -5.2230 5.0945 36 1 9.2324 -3.0322 1.5292 37 1 6.8594 -3.1306 0.8913 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833067028.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:17 Heat of formation + Delta-G solvation = -79.648752 kcal Electronic energy + Delta-G solvation = -25890.209518 eV Core-core repulsion = 21741.972086 eV Total energy + Delta-G solvation = -4148.237433 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.100 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.95077 -44.15945 -40.59607 -39.90706 -37.74552 -36.30106 -35.68676 -33.97662 -32.98688 -32.22879 -30.58615 -29.06336 -27.53683 -24.77716 -24.62202 -23.67852 -22.55779 -22.19401 -21.64913 -19.04700 -18.84208 -18.54754 -18.22415 -17.71983 -17.23476 -17.21222 -16.98245 -16.63797 -16.61840 -16.04668 -15.45533 -15.31302 -15.21018 -14.89118 -14.71297 -14.45221 -14.08133 -13.59020 -13.57383 -13.47595 -13.32399 -12.94659 -12.78954 -12.51727 -12.31154 -12.18006 -12.06118 -12.05580 -11.89324 -11.51515 -11.23587 -10.68710 -10.62762 -10.19908 -9.25287 -8.93330 -8.06313 -5.42923 -0.48323 0.18711 0.83981 1.44839 1.48346 1.54954 1.67328 1.76671 1.97335 2.43948 2.61619 2.71568 3.07443 3.18272 3.32894 3.47385 3.55209 3.75565 3.85078 4.06721 4.18935 4.19611 4.48776 4.54649 4.64361 4.72179 4.86595 4.88641 4.96370 4.99854 5.05218 5.13694 5.17585 5.37248 5.42129 5.56283 5.77006 6.06786 6.13145 6.81294 6.90551 7.50846 7.68438 7.99168 9.02545 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.016197 B = 0.003365 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.288403 B = 8319.946975 C = 9589.274736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.033 4.033 3 Si 0.968 3.032 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.279 4.279 8 H 0.080 0.920 9 N -0.564 5.564 10 C 0.189 3.811 11 C 0.486 3.514 12 O -0.548 6.548 13 O -0.532 6.532 14 C 0.233 3.767 15 C 0.196 3.804 16 N -0.504 5.504 17 C -0.020 4.020 18 C -0.036 4.036 19 C -0.030 4.030 20 C -0.063 4.063 21 C -0.140 4.140 22 C 0.091 3.909 23 F -0.142 7.142 24 C -0.150 4.150 25 C -0.087 4.087 26 O -0.206 6.206 27 H 0.254 0.746 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.405 0.595 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.219 0.781 34 H 0.168 0.832 35 H 0.171 0.829 36 H 0.154 0.846 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.263 -10.135 9.128 18.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.230 4.230 3 Si 0.796 3.204 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.408 4.408 8 H 0.098 0.902 9 N -0.283 5.283 10 C 0.060 3.940 11 C 0.327 3.673 12 O -0.437 6.437 13 O -0.344 6.344 14 C 0.103 3.897 15 C -0.012 4.012 16 N -0.234 5.234 17 C -0.160 4.160 18 C -0.089 4.089 19 C -0.031 4.031 20 C -0.081 4.081 21 C -0.158 4.158 22 C 0.072 3.928 23 F -0.120 7.120 24 C -0.168 4.168 25 C -0.105 4.105 26 O -0.093 6.093 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.264 0.736 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.235 0.765 34 H 0.185 0.815 35 H 0.189 0.811 36 H 0.172 0.828 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.976 -10.134 9.153 18.163 hybrid contribution 0.429 1.431 -1.026 1.812 sum 12.404 -8.703 8.127 17.195 Atomic orbital electron populations 1.70028 1.06355 1.26360 1.53477 1.25520 0.95856 1.01177 1.00468 0.85331 0.77696 0.79136 0.78207 1.20363 1.21823 1.20557 1.19447 0.96415 0.86007 1.38887 0.90241 1.43954 1.26573 1.01423 1.56343 1.20155 0.81023 1.02492 0.90282 1.24947 0.84694 0.69207 0.88439 1.90496 1.87196 1.47373 1.18661 1.84530 1.17354 1.85584 1.46905 1.19317 0.91155 0.87964 0.91234 1.28425 0.80598 0.94392 0.97830 1.70356 1.29703 1.18281 1.05048 1.23851 0.86304 1.03205 1.02603 1.21758 0.95186 1.03394 0.88536 1.17849 0.86412 1.01907 0.96940 1.21182 0.95930 0.97023 0.93994 1.21324 0.92113 1.00961 1.01437 1.18026 0.78440 1.00737 0.95621 1.91501 1.33795 1.94691 1.92061 1.21210 0.96568 1.02086 0.96972 1.21216 0.92356 0.97312 0.99629 1.84486 1.23805 1.61104 1.39896 0.93613 0.89814 0.89071 0.73644 0.88418 0.89664 0.76470 0.81475 0.81139 0.82845 0.85140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.93 9.38 21.65 0.20 -50.73 16 2 C -0.03 -1.77 4.81 84.86 0.41 -1.37 16 3 Si 0.97 43.55 29.62 68.60 2.03 45.58 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.28 -14.59 9.64 84.04 0.81 -13.78 16 8 H 0.08 4.10 7.93 -2.91 -0.02 4.08 16 9 N -0.56 -26.86 2.01 -710.69 -1.43 -28.29 16 10 C 0.19 8.67 5.49 85.63 0.47 9.14 16 11 C 0.49 22.54 6.54 71.24 0.47 23.00 16 12 O -0.55 -28.97 16.81 21.98 0.37 -28.60 16 13 O -0.53 -20.40 13.42 -51.39 -0.69 -21.09 16 14 C 0.23 9.39 6.26 85.63 0.54 9.93 16 15 C 0.20 7.42 7.91 88.33 0.70 8.11 16 16 N -0.50 -17.82 11.27 -302.85 -3.41 -21.23 16 17 C -0.02 -0.56 11.29 83.77 0.95 0.39 16 18 C -0.04 -1.07 7.07 24.24 0.17 -0.90 16 19 C -0.03 -0.72 5.87 -20.09 -0.12 -0.83 16 20 C -0.06 -1.05 9.57 22.52 0.22 -0.83 16 21 C -0.14 -2.08 10.01 22.28 0.22 -1.86 16 22 C 0.09 1.67 7.30 22.43 0.16 1.84 16 23 F -0.14 -2.72 17.26 44.97 0.78 -1.95 16 24 C -0.15 -2.91 10.01 22.28 0.22 -2.69 16 25 C -0.09 -2.02 9.73 22.52 0.22 -1.80 16 26 O -0.21 -7.58 10.59 -7.96 -0.08 -7.66 16 27 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 28 H 0.08 3.42 8.12 -2.39 -0.02 3.40 16 29 H 0.09 4.57 6.46 -2.39 -0.02 4.55 16 30 H 0.40 11.91 9.10 -74.05 -0.67 11.23 16 31 H 0.10 3.73 8.07 -2.39 -0.02 3.71 16 32 H 0.09 3.37 8.04 -2.38 -0.02 3.35 16 33 H 0.22 4.03 7.30 -2.91 -0.02 4.01 16 34 H 0.17 1.75 7.04 -2.91 -0.02 1.73 16 35 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 36 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 37 H 0.13 3.20 7.94 -2.91 -0.02 3.18 16 Total: -1.00 -68.69 337.60 3.66 -65.03 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.47 Total: 20.58 kcal Atomic # 6 Polarization: 22.93 SS G_CDS: 5.43 Total: 28.36 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -4.64 Total: -100.25 kcal Atomic # 8 Polarization: -56.94 SS G_CDS: -0.40 Total: -57.35 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.78 Total: -1.95 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -68.69 3.66 -65.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067028.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.624 kcal (2) G-P(sol) polarization free energy of solvation -68.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds