Wall clock time and date at job start Tue Mar 31 2020 12:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00456 * 2 1 4 4 H 1.48500 * 109.47109 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46967 * 299.99548 * 3 2 1 6 6 H 1.48495 * 109.47304 * 59.99699 * 3 2 1 7 7 C 1.38815 * 119.99508 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99635 * 178.18924 * 7 2 1 9 9 N 1.36934 * 120.00381 * 358.18851 * 7 2 1 10 10 C 1.46504 * 120.00032 * 334.39521 * 9 7 2 11 11 C 1.50701 * 109.47389 * 95.00257 * 10 9 7 12 12 O 1.20823 * 120.00031 * 0.02562 * 11 10 9 13 13 O 1.34232 * 119.99900 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00419 * 154.38693 * 9 7 2 15 15 C 1.50700 * 109.47206 * 270.00738 * 14 9 7 16 16 C 1.34544 * 126.08297 * 94.71433 * 15 14 9 17 17 O 1.34770 * 107.27475 * 179.87565 * 16 15 14 18 18 C 1.34433 * 107.69329 * 0.38243 * 17 16 15 19 19 C 1.47830 * 125.72996 * 179.75803 * 18 17 16 20 20 C 1.39588 * 120.13132 * 179.72389 * 19 18 17 21 21 C 1.37949 * 119.90220 * 179.74723 * 20 19 18 22 22 C 1.38339 * 120.17473 * 0.53526 * 21 20 19 23 23 C 1.38554 * 120.26083 * 359.73891 * 22 21 20 24 24 F 1.35107 * 119.95155 * 180.02562 * 23 22 21 25 25 C 1.38213 * 120.09554 * 359.97438 * 23 22 21 26 26 N 1.31226 * 108.54566 * 359.75815 * 18 17 16 27 27 H 0.97005 * 119.99235 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47165 * 215.00928 * 10 9 7 29 29 H 1.09002 * 109.46806 * 335.00441 * 10 9 7 30 30 H 0.96695 * 116.99782 * 180.02562 * 13 11 10 31 31 H 1.09001 * 109.46747 * 30.00536 * 14 9 7 32 32 H 1.08999 * 109.47033 * 150.00175 * 14 9 7 33 33 H 1.08007 * 126.36230 * 0.02562 * 16 15 14 34 34 H 1.08003 * 120.05095 * 0.02562 * 20 19 18 35 35 H 1.08007 * 119.91446 * 180.27224 * 21 20 19 36 36 H 1.07998 * 119.86956 * 179.72224 * 22 21 20 37 37 H 1.07997 * 120.08399 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8916 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0898 -1.2025 -0.0290 9 7 1.3260 -2.3878 0.0386 10 6 -0.0156 -2.4408 0.6247 11 6 -1.0462 -2.2951 -0.4651 12 8 -0.6960 -2.1612 -1.6137 13 8 -2.3532 -2.3151 -0.1599 14 6 1.9354 -3.6031 -0.5071 15 6 1.5777 -3.7334 -1.9652 16 6 2.3221 -3.3136 -3.0043 17 8 1.6480 -3.6215 -4.1299 18 6 0.4983 -4.2168 -3.7677 19 6 -0.5450 -4.7128 -4.6901 20 6 -1.6957 -5.3202 -4.1849 21 6 -2.6687 -5.7767 -5.0498 22 6 -2.5018 -5.6440 -6.4166 23 6 -1.3597 -5.0473 -6.9259 24 9 -1.2034 -4.9205 -8.2619 25 6 -0.3806 -4.5807 -6.0692 26 7 0.4576 -4.2836 -2.4577 27 1 -0.4849 0.8402 -0.0004 28 1 -0.1538 -3.3967 1.1301 29 1 -0.1301 -1.6298 1.3439 30 1 -2.9766 -2.2184 -0.8927 31 1 3.0189 -3.5447 -0.4026 32 1 1.5643 -4.4715 0.0372 33 1 3.2828 -2.8233 -2.9471 34 1 -1.8263 -5.4286 -3.1183 35 1 -3.5612 -6.2427 -4.6589 36 1 -3.2646 -6.0071 -7.0894 37 1 0.5093 -4.1153 -6.4664 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833067519.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:59 Heat of formation + Delta-G solvation = -71.027800 kcal Electronic energy + Delta-G solvation = -27018.196680 eV Core-core repulsion = 22870.333079 eV Total energy + Delta-G solvation = -4147.863600 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.100 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.98603 -44.01605 -40.34380 -39.90504 -37.70351 -36.07045 -35.58147 -33.73407 -32.94149 -31.69257 -30.49507 -29.00973 -27.59969 -25.05506 -24.49266 -23.73943 -22.16670 -22.10738 -21.38879 -19.06860 -18.79601 -18.28597 -17.59423 -17.57335 -17.26563 -17.18357 -16.95082 -16.80080 -16.64652 -15.87432 -15.79667 -15.40663 -15.04424 -14.95961 -14.73236 -14.24701 -14.09924 -13.58500 -13.26446 -13.19895 -12.96277 -12.90484 -12.67565 -12.34125 -12.29141 -12.16414 -12.07917 -11.93356 -11.55321 -11.35377 -10.96390 -10.64899 -10.49187 -9.93338 -9.16741 -8.90574 -7.96522 -5.41097 -0.41710 0.08833 0.93623 1.45035 1.48177 1.56299 1.83039 1.91994 2.27787 2.49552 2.62511 2.85395 2.90646 3.30939 3.36252 3.72599 3.73754 3.92250 4.02967 4.12345 4.19326 4.26438 4.54736 4.70872 4.74454 4.84362 4.91114 5.00302 5.09202 5.11773 5.21677 5.23787 5.35351 5.36608 5.53533 5.61585 5.76165 6.26038 6.30336 6.91712 7.03908 7.66075 7.90940 8.17197 9.11287 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.017060 B = 0.004069 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.859549 B = 6879.471157 C = 7277.241697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.043 4.043 3 Si 0.971 3.029 4 H -0.259 1.259 5 H -0.309 1.309 6 H -0.289 1.289 7 C -0.256 4.256 8 H 0.090 0.910 9 N -0.571 5.571 10 C 0.195 3.805 11 C 0.483 3.517 12 O -0.535 6.535 13 O -0.542 6.542 14 C 0.213 3.787 15 C -0.013 4.013 16 C -0.079 4.079 17 O -0.217 6.217 18 C 0.190 3.810 19 C 0.008 3.992 20 C -0.091 4.091 21 C -0.076 4.076 22 C -0.129 4.129 23 C 0.090 3.910 24 F -0.141 7.141 25 C -0.144 4.144 26 N -0.448 5.448 27 H 0.247 0.753 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.393 0.607 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.234 0.766 34 H 0.134 0.866 35 H 0.180 0.820 36 H 0.174 0.826 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.320 -12.521 -7.313 14.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.238 4.238 3 Si 0.801 3.199 4 H -0.182 1.182 5 H -0.237 1.237 6 H -0.216 1.216 7 C -0.386 4.386 8 H 0.108 0.892 9 N -0.290 5.290 10 C 0.067 3.933 11 C 0.324 3.676 12 O -0.422 6.422 13 O -0.353 6.353 14 C 0.087 3.913 15 C -0.137 4.137 16 C -0.149 4.149 17 O -0.104 6.104 18 C -0.013 4.013 19 C 0.007 3.993 20 C -0.111 4.111 21 C -0.093 4.093 22 C -0.148 4.148 23 C 0.070 3.930 24 F -0.119 7.119 25 C -0.165 4.165 26 N -0.178 5.178 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.112 0.888 30 H 0.250 0.750 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.250 0.750 34 H 0.152 0.848 35 H 0.197 0.803 36 H 0.192 0.808 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.439 -12.633 -6.991 14.842 hybrid contribution 0.589 2.185 -1.375 2.648 sum -2.850 -10.448 -8.366 13.685 Atomic orbital electron populations 1.69798 1.06538 1.25326 1.56111 1.25771 0.96164 1.01333 1.00509 0.85133 0.78965 0.79832 0.76011 1.18239 1.23744 1.21620 1.19686 0.91409 0.83498 1.43967 0.89201 1.44189 1.13393 1.06073 1.65353 1.20168 0.81321 1.00591 0.91267 1.24987 0.81251 0.69869 0.91506 1.90494 1.81152 1.46446 1.24086 1.84549 1.19321 1.86470 1.45005 1.19708 0.98509 0.89308 0.83800 1.23215 0.90394 0.99542 1.00548 1.25245 1.01372 1.06056 0.82229 1.84357 1.29123 1.60262 1.36630 1.23957 0.87424 0.99520 0.90420 1.17200 0.91979 1.00481 0.89659 1.21362 0.91724 0.96328 1.01678 1.21342 0.99145 0.97406 0.91443 1.21671 0.96608 0.99330 0.97218 1.17552 0.96408 1.02053 0.76944 1.91502 1.95913 1.94226 1.30293 1.21137 1.00681 1.02655 0.92017 1.70315 1.21729 1.19358 1.06406 0.94363 0.90914 0.88825 0.74993 0.88772 0.90711 0.74998 0.84774 0.80281 0.80828 0.84817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.42 8.52 21.65 0.18 -52.23 16 2 C -0.04 -2.26 5.26 84.86 0.45 -1.82 16 3 Si 0.97 43.75 29.55 68.60 2.03 45.78 16 4 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.31 -14.79 7.11 99.48 0.71 -14.08 16 6 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.26 -12.82 9.66 84.03 0.81 -12.01 16 8 H 0.09 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.57 -26.43 2.14 -710.67 -1.52 -27.95 16 10 C 0.20 9.02 5.53 85.63 0.47 9.50 16 11 C 0.48 23.42 6.33 71.24 0.45 23.87 16 12 O -0.53 -29.02 13.42 21.97 0.29 -28.73 16 13 O -0.54 -22.67 13.42 -51.44 -0.69 -23.36 16 14 C 0.21 8.22 6.24 85.63 0.53 8.76 16 15 C -0.01 -0.53 5.38 41.36 0.22 -0.31 16 16 C -0.08 -3.04 12.08 66.97 0.81 -2.23 16 17 O -0.22 -8.68 10.52 -8.38 -0.09 -8.77 16 18 C 0.19 7.59 7.90 87.32 0.69 8.27 16 19 C 0.01 0.27 5.87 -20.11 -0.12 0.15 16 20 C -0.09 -2.46 9.69 22.53 0.22 -2.24 16 21 C -0.08 -1.38 10.03 22.23 0.22 -1.16 16 22 C -0.13 -2.32 10.02 22.37 0.22 -2.10 16 23 C 0.09 2.15 7.29 22.34 0.16 2.31 16 24 F -0.14 -3.41 17.26 44.97 0.78 -2.64 16 25 C -0.14 -4.18 9.69 22.57 0.22 -3.97 16 26 N -0.45 -18.95 9.04 -293.17 -2.65 -21.59 16 27 H 0.25 13.96 8.31 -92.70 -0.77 13.19 16 28 H 0.07 2.89 7.96 -2.39 -0.02 2.87 16 29 H 0.09 4.74 6.48 -2.39 -0.02 4.73 16 30 H 0.39 13.50 9.10 -74.06 -0.67 12.83 16 31 H 0.09 3.13 8.04 -2.39 -0.02 3.11 16 32 H 0.07 2.61 7.94 -2.39 -0.02 2.59 16 33 H 0.23 7.26 8.06 -2.91 -0.02 7.24 16 34 H 0.13 3.83 7.83 -2.91 -0.02 3.80 16 35 H 0.18 1.85 8.06 -2.91 -0.02 1.82 16 36 H 0.17 1.88 8.06 -2.91 -0.02 1.85 16 37 H 0.13 3.89 7.90 -2.91 -0.02 3.87 16 Total: -1.00 -70.92 331.75 4.16 -66.76 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.46 Total: 25.72 kcal Atomic # 6 Polarization: 21.66 SS G_CDS: 5.37 Total: 27.03 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -3.99 Total: -101.78 kcal Atomic # 8 Polarization: -60.38 SS G_CDS: -0.48 Total: -60.86 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.78 Total: -2.64 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -70.92 4.16 -66.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067519.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.266 kcal (2) G-P(sol) polarization free energy of solvation -70.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds