Wall clock time and date at job start Tue Mar 31 2020 13:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.27651 * 125.76646 * 2 1 4 4 O 1.41383 * 113.16776 * 180.30463 * 3 2 1 5 5 C 1.44256 * 107.50908 * 342.62207 * 4 3 2 6 6 H 1.08996 * 111.01162 * 267.01325 * 5 4 3 7 7 C 1.52993 * 111.01127 * 143.17208 * 5 4 3 8 8 N 1.46509 * 109.46682 * 66.45935 * 7 5 4 9 9 C 1.34776 * 119.99648 * 180.02562 * 8 7 5 10 10 O 1.21613 * 120.00623 * 359.97438 * 9 8 7 11 11 C 1.47437 * 119.99726 * 179.97438 * 9 8 7 12 12 C 1.39679 * 120.21277 * 359.97438 * 11 9 8 13 13 C 1.37811 * 119.93702 * 180.02562 * 12 11 9 14 14 C 1.38661 * 120.37944 * 359.71603 * 13 12 11 15 15 C 1.37908 * 120.43741 * 0.56355 * 14 13 12 16 16 C 1.39111 * 120.05181 * 359.43941 * 15 14 13 17 17 S 1.76197 * 120.19274 * 180.29906 * 16 15 14 18 18 C 1.76206 * 100.00040 * 6.84525 * 17 16 15 19 19 H 1.08006 * 119.99236 * 5.64955 * 18 17 16 20 20 C 1.38801 * 120.00313 * 185.65325 * 18 17 16 21 21 N 1.31549 * 119.99838 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00010 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47153 * 90.00159 * 22 20 18 24 24 H 1.48497 * 109.46853 * 210.00122 * 22 20 18 25 25 H 1.48501 * 109.47246 * 329.99901 * 22 20 18 26 26 C 1.51679 * 125.76862 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.47324 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47489 * 119.97839 * 1 2 3 29 29 H 1.09008 * 109.46931 * 239.97894 * 1 2 3 30 30 H 1.08999 * 109.47719 * 306.46222 * 7 5 4 31 31 H 1.08996 * 109.47770 * 186.45272 * 7 5 4 32 32 H 0.96996 * 120.00213 * 359.97438 * 8 7 5 33 33 H 1.08004 * 120.03385 * 0.03891 * 12 11 9 34 34 H 1.07996 * 119.80450 * 179.97438 * 13 12 11 35 35 H 1.07995 * 119.78143 * 180.30244 * 14 13 12 36 36 H 1.07999 * 119.97410 * 179.72363 * 15 14 13 37 37 H 0.97000 * 120.00087 * 179.97438 * 21 20 18 38 38 H 1.08997 * 110.80781 * 77.05436 * 26 2 1 39 39 H 1.09002 * 110.80932 * 313.54285 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2531 1.0358 0.0000 4 8 3.6329 0.7274 -0.0069 5 6 3.7718 -0.6499 0.3991 6 1 3.9325 -0.7260 1.4745 7 6 4.9005 -1.3377 -0.3714 8 7 6.1840 -0.7408 0.0064 9 6 7.3261 -1.1906 -0.5501 10 8 7.2914 -2.0923 -1.3655 11 6 8.6177 -0.5895 -0.1704 12 6 8.6628 0.4466 0.7652 13 6 9.8732 1.0047 1.1156 14 6 11.0501 0.5397 0.5488 15 6 11.0231 -0.4787 -0.3808 16 6 9.8114 -1.0551 -0.7477 17 16 9.7734 -2.3618 -1.9291 18 6 11.5012 -2.6446 -2.1282 19 1 12.2097 -2.1183 -1.5057 20 6 11.9517 -3.5435 -3.0851 21 7 11.0886 -4.1841 -3.8437 22 14 13.7834 -3.8427 -3.2966 23 1 14.2088 -4.9554 -2.4101 24 1 14.0666 -4.1999 -4.7099 25 1 14.5308 -2.6106 -2.9381 26 6 2.3936 -1.2307 0.0006 27 1 -0.3634 1.0277 0.0005 28 1 -0.3634 -0.5135 -0.8901 29 1 -0.3633 -0.5142 0.8899 30 1 4.7409 -1.2088 -1.4419 31 1 4.9095 -2.4008 -0.1308 32 1 6.2117 -0.0214 0.6564 33 1 7.7500 0.8100 1.2138 34 1 9.9055 1.8060 1.8389 35 1 11.9937 0.9807 0.8340 36 1 11.9439 -0.8321 -0.8208 37 1 11.4034 -4.8120 -4.5126 38 1 2.4347 -1.6787 -0.9922 39 1 2.0504 -1.9549 0.7394 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854794391.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:23 Heat of formation + Delta-G solvation = 11.923732 kcal Electronic energy + Delta-G solvation = -23294.783709 eV Core-core repulsion = 19716.730333 eV Total energy + Delta-G solvation = -3578.053376 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.56694 -39.36808 -37.45257 -35.00972 -33.88887 -32.74581 -31.72224 -30.29330 -30.23765 -28.79248 -26.49882 -25.81515 -23.12065 -22.14328 -21.74961 -20.24684 -19.96289 -18.24749 -17.27806 -16.97360 -16.37454 -15.82992 -15.55943 -15.19058 -14.95424 -14.62389 -14.34028 -13.97885 -13.77188 -13.62663 -13.50845 -13.22982 -13.00699 -12.97174 -12.73751 -12.50841 -11.99796 -11.86802 -11.68163 -11.57173 -11.20068 -11.18764 -10.92418 -10.89138 -10.31450 -9.81737 -9.70621 -9.65513 -9.49178 -8.83776 -8.71702 -8.31551 -8.06459 -6.52348 -6.45347 -4.15771 1.49631 1.54550 2.04201 2.75530 3.11062 3.13603 3.20142 3.31592 3.44344 3.51754 3.81311 4.07093 4.11345 4.28904 4.44212 4.50524 4.70596 4.94877 4.95724 4.99979 5.05439 5.14283 5.22040 5.26190 5.33986 5.40489 5.59581 5.62364 5.70189 5.79560 5.98050 6.13769 6.40540 6.60784 6.67666 6.87226 7.04328 7.13037 7.15090 7.45862 7.60841 7.87118 8.17180 8.76467 9.00942 10.58019 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.020107 B = 0.002890 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.224330 B = 9686.641908 C =10927.799519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.080 3.920 3 N -0.293 5.293 4 O -0.192 6.192 5 C 0.030 3.970 6 H 0.094 0.906 7 C 0.132 3.868 8 N -0.736 5.736 9 C 0.554 3.446 10 O -0.510 6.510 11 C -0.177 4.177 12 C -0.060 4.060 13 C -0.186 4.186 14 C -0.076 4.076 15 C -0.153 4.153 16 C -0.056 4.056 17 S 0.183 5.817 18 C -0.595 4.595 19 H 0.091 0.909 20 C 0.083 3.917 21 N -0.859 5.859 22 Si 0.919 3.081 23 H -0.273 1.273 24 H -0.280 1.280 25 H -0.268 1.268 26 C -0.148 4.148 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.399 0.601 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.139 0.861 37 H 0.275 0.725 38 H 0.108 0.892 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.135 6.363 10.269 20.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 N -0.035 5.035 4 O -0.211 6.211 5 C -0.029 4.029 6 H 0.112 0.888 7 C 0.007 3.993 8 N -0.391 5.391 9 C 0.344 3.656 10 O -0.387 6.387 11 C -0.192 4.192 12 C -0.080 4.080 13 C -0.211 4.211 14 C -0.098 4.098 15 C -0.179 4.179 16 C -0.176 4.176 17 S 0.447 5.553 18 C -0.742 4.742 19 H 0.109 0.891 20 C -0.128 4.128 21 N -0.491 5.491 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.205 1.205 25 H -0.192 1.192 26 C -0.187 4.187 27 H 0.100 0.900 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.234 0.766 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.157 0.843 37 H 0.085 0.915 38 H 0.126 0.874 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.828 5.883 8.611 20.654 hybrid contribution 2.294 -0.050 0.908 2.468 sum -15.534 5.833 9.519 19.129 Atomic orbital electron populations 1.20433 0.85325 1.04638 1.04063 1.26291 0.98181 0.92257 0.94656 1.77920 0.89447 1.23338 1.12783 1.91337 1.15289 1.26701 1.87738 1.23975 0.95248 0.83460 1.00210 0.88822 1.21295 0.81258 0.97159 0.99563 1.45713 1.05399 1.40647 1.47344 1.18310 0.83567 0.82713 0.81049 1.90785 1.85998 1.29265 1.32649 1.19070 0.91651 1.03297 1.05214 1.20917 0.97333 0.94425 0.95322 1.20644 0.92577 1.03352 1.04503 1.21091 0.97519 0.95754 0.95471 1.21435 0.98121 0.98183 1.00121 1.23079 0.94067 1.00328 1.00094 1.84737 1.05947 1.27396 1.37236 1.24056 0.95541 1.30193 1.24371 0.89141 1.25096 0.99596 0.94235 0.93847 1.69974 1.34810 1.24520 1.19818 0.86145 0.82468 0.79086 0.77838 1.19877 1.20483 1.19232 1.23093 0.91442 0.98611 1.05589 0.89961 0.89160 0.89311 0.90583 0.89675 0.76600 0.87114 0.87028 0.86990 0.84348 0.91549 0.87350 0.87560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.35 10.49 36.01 0.38 0.03 16 2 C 0.08 0.64 7.45 -78.57 -0.59 0.05 16 3 N -0.29 -3.48 12.45 35.65 0.44 -3.04 16 4 O -0.19 -2.53 12.23 -11.37 -0.14 -2.67 16 5 C 0.03 0.30 3.86 -25.80 -0.10 0.20 16 6 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 7 C 0.13 1.64 5.37 -4.04 -0.02 1.62 16 8 N -0.74 -10.90 5.50 -61.38 -0.34 -11.24 16 9 C 0.55 10.94 7.75 -12.51 -0.10 10.84 16 10 O -0.51 -11.96 13.77 5.27 0.07 -11.89 16 11 C -0.18 -3.59 5.89 -104.75 -0.62 -4.20 16 12 C -0.06 -0.99 9.53 -39.20 -0.37 -1.36 16 13 C -0.19 -2.96 10.02 -39.58 -0.40 -3.36 16 14 C -0.08 -1.33 10.03 -39.55 -0.40 -1.73 16 15 C -0.15 -3.26 9.22 -39.38 -0.36 -3.62 16 16 C -0.06 -1.29 6.14 -38.39 -0.24 -1.53 16 17 S 0.18 4.94 18.56 -107.50 -2.00 2.94 16 18 C -0.60 -16.51 9.00 30.94 0.28 -16.24 16 19 H 0.09 2.38 4.98 -52.48 -0.26 2.12 16 20 C 0.08 2.29 5.49 -17.46 -0.10 2.19 16 21 N -0.86 -24.85 13.22 55.49 0.73 -24.12 16 22 Si 0.92 20.78 29.55 -169.99 -5.02 15.76 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 26 C -0.15 -1.04 6.63 -26.46 -0.18 -1.21 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.19 8.14 -51.92 -0.42 -0.23 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.40 5.04 6.50 -40.82 -0.27 4.78 16 33 H 0.11 1.43 6.40 -52.48 -0.34 1.09 16 34 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.14 3.05 5.04 -52.49 -0.26 2.79 16 37 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 38 H 0.11 0.71 7.91 -51.93 -0.41 0.30 16 39 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 345.73 15.07 5.21 5.21 Total: -1.00 -34.59 345.73 -8.31 -42.90 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -4.48 Total: 4.46 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -2.80 Total: -18.31 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.84 Total: -38.40 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.07 Total: -14.56 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -2.00 Total: 2.94 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.59 -8.31 -42.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854794391.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.827 kcal (2) G-P(sol) polarization free energy of solvation -34.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds