Wall clock time and date at job start Tue Mar 31 2020 13:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.27651 * 125.76646 * 2 1 4 4 O 1.41383 * 113.16776 * 180.30463 * 3 2 1 5 5 C 1.44256 * 107.50908 * 342.62207 * 4 3 2 6 6 H 1.08996 * 111.01162 * 267.01325 * 5 4 3 7 7 C 1.52993 * 111.01127 * 143.17208 * 5 4 3 8 8 N 1.46509 * 109.46682 * 66.45935 * 7 5 4 9 9 C 1.34776 * 119.99648 * 180.02562 * 8 7 5 10 10 O 1.21613 * 120.00623 * 359.97438 * 9 8 7 11 11 C 1.47437 * 119.99726 * 179.97438 * 9 8 7 12 12 C 1.39679 * 120.21277 * 359.97438 * 11 9 8 13 13 C 1.37811 * 119.93702 * 180.02562 * 12 11 9 14 14 C 1.38661 * 120.37944 * 359.71603 * 13 12 11 15 15 C 1.37908 * 120.43741 * 0.56355 * 14 13 12 16 16 C 1.39111 * 120.05181 * 359.43941 * 15 14 13 17 17 S 1.76197 * 120.19274 * 180.29906 * 16 15 14 18 18 C 1.76206 * 100.00040 * 6.84525 * 17 16 15 19 19 H 1.08006 * 119.99236 * 5.64955 * 18 17 16 20 20 C 1.38801 * 120.00313 * 185.65325 * 18 17 16 21 21 N 1.31549 * 119.99838 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00010 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47153 * 90.00159 * 22 20 18 24 24 H 1.48497 * 109.46853 * 210.00122 * 22 20 18 25 25 H 1.48501 * 109.47246 * 329.99901 * 22 20 18 26 26 C 1.51679 * 125.76862 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.47324 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47489 * 119.97839 * 1 2 3 29 29 H 1.09008 * 109.46931 * 239.97894 * 1 2 3 30 30 H 1.08999 * 109.47719 * 306.46222 * 7 5 4 31 31 H 1.08996 * 109.47770 * 186.45272 * 7 5 4 32 32 H 0.96996 * 120.00213 * 359.97438 * 8 7 5 33 33 H 1.08004 * 120.03385 * 0.03891 * 12 11 9 34 34 H 1.07996 * 119.80450 * 179.97438 * 13 12 11 35 35 H 1.07995 * 119.78143 * 180.30244 * 14 13 12 36 36 H 1.07999 * 119.97410 * 179.72363 * 15 14 13 37 37 H 0.97000 * 120.00087 * 179.97438 * 21 20 18 38 38 H 1.08997 * 110.80781 * 77.05436 * 26 2 1 39 39 H 1.09002 * 110.80932 * 313.54285 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2531 1.0358 0.0000 4 8 3.6329 0.7274 -0.0069 5 6 3.7718 -0.6499 0.3991 6 1 3.9325 -0.7260 1.4745 7 6 4.9005 -1.3377 -0.3714 8 7 6.1840 -0.7408 0.0064 9 6 7.3261 -1.1906 -0.5501 10 8 7.2914 -2.0923 -1.3655 11 6 8.6177 -0.5895 -0.1704 12 6 8.6628 0.4466 0.7652 13 6 9.8732 1.0047 1.1156 14 6 11.0501 0.5397 0.5488 15 6 11.0231 -0.4787 -0.3808 16 6 9.8114 -1.0551 -0.7477 17 16 9.7734 -2.3618 -1.9291 18 6 11.5012 -2.6446 -2.1282 19 1 12.2097 -2.1183 -1.5057 20 6 11.9517 -3.5435 -3.0851 21 7 11.0886 -4.1841 -3.8437 22 14 13.7834 -3.8427 -3.2966 23 1 14.2088 -4.9554 -2.4101 24 1 14.0666 -4.1999 -4.7099 25 1 14.5308 -2.6106 -2.9381 26 6 2.3936 -1.2307 0.0006 27 1 -0.3634 1.0277 0.0005 28 1 -0.3634 -0.5135 -0.8901 29 1 -0.3633 -0.5142 0.8899 30 1 4.7409 -1.2088 -1.4419 31 1 4.9095 -2.4008 -0.1308 32 1 6.2117 -0.0214 0.6564 33 1 7.7500 0.8100 1.2138 34 1 9.9055 1.8060 1.8389 35 1 11.9937 0.9807 0.8340 36 1 11.9439 -0.8321 -0.8208 37 1 11.4034 -4.8120 -4.5126 38 1 2.4347 -1.6787 -0.9922 39 1 2.0504 -1.9549 0.7394 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854794391.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:22 Heat of formation + Delta-G solvation = -12.730850 kcal Electronic energy + Delta-G solvation = -23295.852812 eV Core-core repulsion = 19716.730333 eV Total energy + Delta-G solvation = -3579.122479 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.42369 -40.78054 -38.97586 -36.20987 -34.77194 -34.68760 -32.88653 -31.80701 -31.52519 -29.26391 -27.85033 -27.51499 -24.52546 -23.46351 -22.83970 -21.64859 -20.76054 -19.96459 -18.85135 -17.86255 -17.42747 -17.20891 -17.04463 -16.67406 -16.16766 -15.93841 -15.50533 -15.43985 -15.25822 -14.70267 -14.49920 -14.39869 -14.20627 -13.78845 -13.65753 -13.42508 -13.32438 -13.17429 -12.98794 -12.90243 -12.65191 -12.56427 -12.42306 -12.05469 -11.56246 -11.51910 -11.41829 -11.29900 -10.44991 -10.43359 -10.21635 -9.94255 -9.79085 -8.47681 -8.45681 -6.24875 0.01082 0.52033 0.87747 1.26325 1.36348 1.44820 1.63357 1.95310 2.01240 2.13951 2.24244 2.86814 3.02374 3.14957 3.24173 3.44403 3.61041 3.70570 3.88257 3.96142 4.00640 4.25458 4.40613 4.52086 4.59844 4.61530 4.62913 4.69569 4.78277 4.81654 4.84686 4.95207 5.09068 5.32465 5.34768 5.38817 5.45344 5.55284 5.65810 6.08784 6.15237 6.44460 6.54425 6.95441 7.29077 8.60037 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.020107 B = 0.002890 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.224330 B = 9686.641908 C =10927.799519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.100 3.900 3 N -0.341 5.341 4 O -0.231 6.231 5 C 0.033 3.967 6 H 0.112 0.888 7 C 0.131 3.869 8 N -0.715 5.715 9 C 0.548 3.452 10 O -0.554 6.554 11 C -0.183 4.183 12 C -0.055 4.055 13 C -0.158 4.158 14 C -0.068 4.068 15 C -0.175 4.175 16 C -0.072 4.072 17 S 0.065 5.935 18 C -0.602 4.602 19 H 0.095 0.905 20 C 0.024 3.976 21 N -0.905 5.905 22 Si 0.994 3.006 23 H -0.265 1.265 24 H -0.273 1.273 25 H -0.258 1.258 26 C -0.146 4.146 27 H 0.078 0.922 28 H 0.109 0.891 29 H 0.116 0.884 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.412 0.588 33 H 0.156 0.844 34 H 0.165 0.835 35 H 0.151 0.849 36 H 0.121 0.879 37 H 0.276 0.724 38 H 0.112 0.888 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.133 8.534 13.571 24.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 N -0.086 5.086 4 O -0.247 6.247 5 C -0.026 4.026 6 H 0.130 0.870 7 C 0.006 3.994 8 N -0.369 5.369 9 C 0.337 3.663 10 O -0.434 6.434 11 C -0.196 4.196 12 C -0.075 4.075 13 C -0.181 4.181 14 C -0.089 4.089 15 C -0.200 4.200 16 C -0.190 4.190 17 S 0.324 5.676 18 C -0.749 4.749 19 H 0.112 0.888 20 C -0.182 4.182 21 N -0.540 5.540 22 Si 0.815 3.185 23 H -0.190 1.190 24 H -0.198 1.198 25 H -0.182 1.182 26 C -0.185 4.185 27 H 0.097 0.903 28 H 0.128 0.872 29 H 0.135 0.865 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.250 0.750 33 H 0.173 0.827 34 H 0.183 0.817 35 H 0.169 0.831 36 H 0.138 0.862 37 H 0.085 0.915 38 H 0.130 0.870 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.856 8.149 12.010 23.795 hybrid contribution 2.345 -0.454 0.156 2.394 sum -16.510 7.695 12.167 21.905 Atomic orbital electron populations 1.20677 0.82384 1.05191 1.06255 1.27017 0.99738 0.91687 0.90837 1.77955 0.88889 1.24977 1.16821 1.91284 1.16928 1.27998 1.88456 1.24000 0.95475 0.82625 1.00468 0.87027 1.21423 0.81013 0.97924 0.99010 1.45554 1.05008 1.40115 1.46209 1.18478 0.84778 0.82305 0.80778 1.90782 1.86649 1.31298 1.34704 1.19463 0.90981 1.03855 1.05338 1.21425 0.99917 0.92524 0.93619 1.21320 0.91148 1.02607 1.02981 1.21547 1.00226 0.93754 0.93379 1.21462 0.96739 0.99919 1.01849 1.22991 0.96204 0.99925 0.99870 1.84892 1.07237 1.32961 1.42517 1.24248 0.95361 1.30555 1.24706 0.88768 1.26156 1.04696 0.93892 0.93428 1.70127 1.37070 1.25825 1.20994 0.85025 0.76147 0.79296 0.78036 1.19027 1.19781 1.18171 1.23185 0.89536 0.98855 1.06931 0.90307 0.87220 0.86529 0.92583 0.88986 0.75034 0.82693 0.81734 0.83133 0.86181 0.91490 0.86960 0.83966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.43 10.49 71.24 0.75 0.32 16 2 C 0.10 1.36 7.45 46.89 0.35 1.71 16 3 N -0.34 -7.73 12.45 -40.62 -0.51 -8.24 16 4 O -0.23 -5.91 12.23 -38.30 -0.47 -6.38 16 5 C 0.03 0.60 3.86 31.20 0.12 0.72 16 6 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 7 C 0.13 3.21 5.37 86.38 0.46 3.67 16 8 N -0.71 -20.64 5.50 -466.35 -2.56 -23.20 16 9 C 0.55 22.11 7.75 86.67 0.67 22.78 16 10 O -0.55 -27.76 13.77 -4.07 -0.06 -27.82 16 11 C -0.18 -7.35 5.89 -19.95 -0.12 -7.47 16 12 C -0.06 -1.60 9.53 22.52 0.21 -1.38 16 13 C -0.16 -4.12 10.02 22.27 0.22 -3.89 16 14 C -0.07 -2.12 10.03 22.29 0.22 -1.90 16 15 C -0.17 -7.43 9.22 22.40 0.21 -7.22 16 16 C -0.07 -3.45 6.14 23.04 0.14 -3.31 16 17 S 0.07 3.82 18.56 -56.49 -1.05 2.77 16 18 C -0.60 -35.58 9.00 67.95 0.61 -34.97 16 19 H 0.09 5.25 4.98 -2.91 -0.01 5.23 16 20 C 0.02 1.38 5.49 84.87 0.47 1.85 16 21 N -0.91 -55.88 13.22 21.64 0.29 -55.59 16 22 Si 0.99 44.29 29.55 68.60 2.03 46.32 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 24 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 25 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 26 C -0.15 -1.68 6.63 30.77 0.20 -1.47 16 27 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.12 -0.01 8.14 -2.38 -0.02 -0.03 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.41 9.43 6.50 -92.71 -0.60 8.83 16 33 H 0.16 3.14 6.40 -2.91 -0.02 3.12 16 34 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 35 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 36 H 0.12 5.49 5.04 -2.91 -0.01 5.48 16 37 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 38 H 0.11 1.27 7.91 -2.39 -0.02 1.25 16 39 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -85.53 345.73 2.69 -82.83 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 0.50 Total: 19.87 kcal Atomic # 6 Polarization: -35.09 SS G_CDS: 4.53 Total: -30.56 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -2.78 Total: -87.04 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -0.52 Total: -34.20 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -1.05 Total: 2.77 kcal Total: -85.53 2.69 -82.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854794391.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.101 kcal (2) G-P(sol) polarization free energy of solvation -85.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds