Wall clock time and date at job start Tue Mar 31 2020 13:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47509 * 0.69280 * 3 2 1 5 5 C 1.36892 * 120.00397 * 263.62720 * 4 3 2 6 6 H 1.07997 * 119.99971 * 141.03378 * 5 4 3 7 7 C 1.39010 * 119.99545 * 321.03449 * 5 4 3 8 8 N 1.31401 * 119.99783 * 164.03229 * 7 5 4 9 9 Si 1.86794 * 120.00203 * 344.03287 * 7 5 4 10 10 H 1.48502 * 109.47248 * 89.68965 * 9 7 5 11 11 H 1.48498 * 109.47425 * 209.68870 * 9 7 5 12 12 H 1.48498 * 109.47091 * 329.69243 * 9 7 5 13 13 C 1.34782 * 119.99736 * 83.62238 * 4 3 2 14 14 O 1.21724 * 119.99694 * 181.62943 * 13 4 3 15 15 C 1.46549 * 119.99920 * 1.62911 * 13 4 3 16 16 S 1.76219 * 126.18173 * 351.59937 * 15 13 4 17 17 C 1.70926 * 90.37577 * 180.02562 * 16 15 13 18 18 C 1.50695 * 124.70260 * 179.73918 * 17 16 15 19 19 H 1.09000 * 110.80404 * 3.62116 * 18 17 16 20 20 C 1.54813 * 110.90693 * 239.99709 * 18 17 16 21 21 C 1.54097 * 104.18890 * 220.92135 * 20 18 17 22 22 O 1.43742 * 107.29359 * 357.96846 * 21 20 18 23 23 C 1.44381 * 106.97677 * 26.51717 * 22 21 20 24 24 N 1.29374 * 110.59363 * 359.97438 * 17 16 15 25 25 C 1.30944 * 117.47122 * 0.02562 * 24 17 16 26 26 C 1.50702 * 123.04198 * 179.97438 * 25 24 17 27 27 H 4.40646 * 5.51397 * 180.02562 * 4 1 2 28 28 H 1.09002 * 109.46723 * 240.69493 * 3 2 1 29 29 H 1.08996 * 109.46798 * 120.69945 * 3 2 1 30 30 H 0.96995 * 119.99819 * 179.97438 * 8 7 5 31 31 H 1.09008 * 110.48583 * 339.59450 * 20 18 17 32 32 H 1.08998 * 110.49034 * 102.24082 * 20 18 17 33 33 H 1.09004 * 109.88094 * 117.38811 * 21 20 18 34 34 H 1.09002 * 109.87856 * 238.54408 * 21 20 18 35 35 H 1.09006 * 110.61698 * 201.44374 * 23 22 21 36 36 H 1.08994 * 110.62076 * 78.44161 * 23 22 21 37 37 H 1.09003 * 109.47267 * 270.04413 * 26 25 24 38 38 H 1.09003 * 109.47082 * 30.04489 * 26 25 24 39 39 H 1.08997 * 109.47064 * 150.04444 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3802 -0.0167 5 6 3.4876 -1.9957 1.1541 6 1 3.2478 -3.0371 1.3101 7 6 4.1542 -1.2803 2.1421 8 7 4.2171 -1.7531 3.3664 9 14 4.9605 0.3533 1.7292 10 1 3.9831 1.4529 1.9315 11 1 6.1333 0.5645 2.6153 12 1 5.4060 0.3415 0.3127 13 6 3.2378 -2.0446 -1.1849 14 8 3.6159 -3.2016 -1.1957 15 6 2.8942 -1.3740 -2.4419 16 16 2.1395 0.2101 -2.6034 17 6 2.1730 0.0650 -4.3061 18 6 1.6539 1.1041 -5.2662 19 1 1.3118 1.9896 -4.7304 20 6 0.5245 0.5233 -6.1514 21 6 0.8107 1.0961 -7.5530 22 8 1.9589 1.9532 -7.4380 23 6 2.7319 1.4742 -6.3166 24 7 2.7013 -1.0629 -4.6564 25 6 3.1014 -1.8649 -3.7017 26 6 3.7326 -3.2074 -3.9669 27 1 -1.0498 -0.0004 -0.0002 28 1 3.0091 0.5038 0.8962 29 1 3.0090 0.5255 -0.8836 30 1 4.6825 -1.2541 4.0557 31 1 0.5736 -0.5656 -6.1669 32 1 -0.4499 0.8570 -5.7945 33 1 1.0225 0.2843 -8.2490 34 1 -0.0476 1.6709 -7.9009 35 1 3.3843 2.2604 -5.9364 36 1 3.3119 0.5952 -6.5976 37 1 2.9564 -3.9713 -4.0125 38 1 4.2678 -3.1761 -4.9160 39 1 4.4303 -3.4457 -3.1641 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868041137.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:46 Heat of formation + Delta-G solvation = 44.022827 kcal Electronic energy + Delta-G solvation = -24654.952476 eV Core-core repulsion = 21078.291021 eV Total energy + Delta-G solvation = -3576.661455 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.18783 -39.35722 -38.52875 -35.60321 -33.51906 -32.89479 -31.83844 -30.76830 -29.31378 -28.30037 -27.13369 -25.03486 -24.72698 -22.70483 -21.37989 -20.73606 -18.85127 -18.29921 -17.86691 -17.00762 -16.70503 -16.35406 -15.88791 -15.65752 -15.15514 -15.09478 -14.34283 -14.19184 -13.82824 -13.72903 -13.34213 -13.22424 -13.01284 -12.70400 -12.49594 -12.35624 -12.23579 -11.82575 -11.65308 -11.43242 -11.19696 -11.05629 -11.03432 -10.87892 -10.45119 -10.09092 -9.94740 -9.92197 -9.38168 -9.31469 -8.91578 -8.81271 -8.41940 -8.05402 -6.61118 -4.21414 0.54437 1.48187 1.88601 2.72539 2.82438 2.97607 3.03563 3.06239 3.19134 3.62632 3.84306 3.91353 4.10757 4.27828 4.44262 4.54457 4.57407 4.74406 4.90060 4.92310 5.01515 5.21840 5.27243 5.41747 5.46808 5.50537 5.51646 5.65290 5.68817 5.71929 5.83389 6.00847 6.14708 6.16401 6.18801 6.60249 6.69744 7.26828 7.87638 7.90754 8.02230 8.22162 8.66091 9.00307 9.42499 10.49564 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.019245 B = 0.004299 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.538660 B = 6511.826485 C = 6944.066651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.186 4.186 3 C 0.176 3.824 4 N -0.448 5.448 5 C -0.309 4.309 6 H 0.115 0.885 7 C 0.063 3.937 8 N -0.851 5.851 9 Si 0.867 3.133 10 H -0.267 1.267 11 H -0.277 1.277 12 H -0.258 1.258 13 C 0.539 3.461 14 O -0.537 6.537 15 C -0.263 4.263 16 S 0.185 5.815 17 C 0.003 3.997 18 C -0.042 4.042 19 H 0.102 0.898 20 C -0.142 4.142 21 C 0.050 3.950 22 O -0.378 6.378 23 C 0.062 3.938 24 N -0.469 5.469 25 C 0.118 3.882 26 C -0.077 4.077 27 H 0.217 0.783 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.279 0.721 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.471 8.993 -14.667 18.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.189 4.189 3 C 0.052 3.948 4 N -0.168 5.168 5 C -0.437 4.437 6 H 0.132 0.868 7 C -0.145 4.145 8 N -0.486 5.486 9 Si 0.693 3.307 10 H -0.194 1.194 11 H -0.203 1.203 12 H -0.182 1.182 13 C 0.327 3.673 14 O -0.419 6.419 15 C -0.387 4.387 16 S 0.446 5.554 17 C -0.271 4.271 18 C -0.064 4.064 19 H 0.121 0.879 20 C -0.182 4.182 21 C -0.027 4.027 22 O -0.297 6.297 23 C -0.016 4.016 24 N -0.184 5.184 25 C -0.020 4.020 26 C -0.136 4.136 27 H 0.234 0.766 28 H 0.129 0.871 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.438 9.269 -14.459 18.342 hybrid contribution 0.420 0.008 0.093 0.430 sum -6.018 9.277 -14.366 18.129 Atomic orbital electron populations 1.24715 0.95537 0.99397 1.01362 1.23286 0.94542 1.01152 0.99903 1.19202 0.85075 0.87914 1.02616 1.43561 1.55988 1.10665 1.06566 1.19123 1.36057 0.98938 0.89571 0.86794 1.25405 0.95712 0.98557 0.94852 1.69658 1.38948 1.39399 1.00590 0.87150 0.80061 0.83183 0.80261 1.19389 1.20302 1.18210 1.16694 0.82442 0.87193 0.80924 1.90686 1.50035 1.15899 1.85246 1.26273 1.12890 0.99415 1.00135 1.84565 1.54596 1.15915 1.00298 1.27153 1.03120 0.97123 0.99686 1.21295 0.96267 0.94600 0.94238 0.87943 1.23005 0.98346 1.02547 0.94257 1.23149 0.89066 0.94004 0.96449 1.88858 1.36564 1.53757 1.50496 1.23608 0.93309 1.00295 0.84404 1.65853 1.13008 1.02795 1.36751 1.20731 0.98125 0.97582 0.85526 1.20481 1.00748 0.89458 1.02914 0.76570 0.87096 0.89566 0.91007 0.89526 0.90056 0.92097 0.89765 0.88655 0.90597 0.90685 0.91569 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.01 19.25 29.55 0.57 -2.44 16 2 C -0.19 -3.47 11.14 -37.12 -0.41 -3.89 16 3 C 0.18 3.61 4.00 -6.83 -0.03 3.58 16 4 N -0.45 -10.82 2.16 -119.47 -0.26 -11.08 16 5 C -0.31 -8.48 9.39 -15.01 -0.14 -8.62 16 6 H 0.11 3.49 7.92 -52.49 -0.42 3.07 16 7 C 0.06 1.65 5.37 -17.45 -0.09 1.56 16 8 N -0.85 -23.50 13.96 55.50 0.77 -22.72 16 9 Si 0.87 19.14 24.88 -169.99 -4.23 14.91 16 10 H -0.27 -5.37 6.50 56.52 0.37 -5.00 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 13 C 0.54 12.82 7.49 -12.91 -0.10 12.72 16 14 O -0.54 -14.07 14.34 5.17 0.07 -13.99 16 15 C -0.26 -5.20 6.26 -36.76 -0.23 -5.43 16 16 S 0.19 2.91 16.49 -107.50 -1.77 1.14 16 17 C 0.00 0.04 6.00 -13.32 -0.08 -0.04 16 18 C -0.04 -0.47 3.61 -89.76 -0.32 -0.79 16 19 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 20 C -0.14 -1.39 6.59 -25.20 -0.17 -1.56 16 21 C 0.05 0.47 7.70 37.73 0.29 0.76 16 22 O -0.38 -4.39 11.52 -35.23 -0.41 -4.79 16 23 C 0.06 0.69 7.16 38.21 0.27 0.96 16 24 N -0.47 -7.64 10.01 -7.47 -0.07 -7.72 16 25 C 0.12 2.14 6.84 -83.50 -0.57 1.57 16 26 C -0.08 -1.28 9.63 36.01 0.35 -0.94 16 27 H 0.22 2.42 7.80 -54.10 -0.42 2.00 16 28 H 0.11 2.33 3.16 -51.93 -0.16 2.16 16 29 H 0.09 1.59 4.46 -22.74 -0.10 1.49 16 30 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.09 0.97 7.73 -51.92 -0.40 0.56 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 0.93 7.78 -51.93 -0.40 0.52 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.10 1.81 6.27 -51.93 -0.33 1.49 16 LS Contribution 334.93 15.07 5.05 5.05 Total: -1.00 -30.83 334.93 -5.87 -36.70 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -4.36 Total: 5.06 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -0.66 Total: -2.55 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 0.44 Total: -41.52 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.33 Total: -18.79 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.23 Total: 14.91 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -1.77 Total: 1.14 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.83 -5.87 -36.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868041137.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.723 kcal (2) G-P(sol) polarization free energy of solvation -30.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds