Wall clock time and date at job start Tue Mar 31 2020 12:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00161 * 2 1 4 4 H 1.48505 * 109.46839 * 240.00188 * 3 2 1 5 5 H 1.48498 * 109.47361 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46988 * 120.00367 * 3 2 1 7 7 C 1.37882 * 119.99411 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99382 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00308 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46764 * 180.02562 * 9 7 2 11 11 S 1.81406 * 109.46750 * 180.02562 * 10 9 7 12 12 O 1.42090 * 110.54737 * 68.37498 * 11 10 9 13 13 O 1.42105 * 110.54097 * 291.62075 * 11 10 9 14 14 N 1.65594 * 104.45098 * 180.02562 * 11 10 9 15 15 C 1.46504 * 120.00257 * 64.99294 * 14 11 10 16 16 C 1.50699 * 109.47416 * 165.00330 * 15 14 11 17 17 C 1.36178 * 120.19431 * 260.00872 * 16 15 14 18 18 C 1.39313 * 120.86990 * 179.97438 * 17 16 15 19 19 C 1.36109 * 121.06827 * 359.97438 * 18 17 16 20 20 C 1.40554 * 119.74449 * 0.27978 * 19 18 17 21 21 N 1.33689 * 121.07244 * 180.27964 * 20 19 18 22 22 C 1.31084 * 121.32245 * 179.74423 * 21 20 19 23 23 C 1.39331 * 121.74804 * 359.69691 * 22 21 20 24 24 C 1.36566 * 119.94360 * 0.02562 * 23 22 21 25 25 C 1.40393 * 120.19573 * 79.98018 * 16 15 14 26 26 H 0.97003 * 119.99418 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47111 * 60.00055 * 9 7 2 28 28 H 1.08999 * 109.46990 * 300.00066 * 9 7 2 29 29 H 1.08996 * 109.47341 * 60.00724 * 10 9 7 30 30 H 1.08999 * 109.47320 * 299.99740 * 10 9 7 31 31 H 0.97001 * 120.00052 * 245.00492 * 14 11 10 32 32 H 1.09004 * 109.46901 * 45.00439 * 15 14 11 33 33 H 1.08999 * 109.47148 * 285.00489 * 15 14 11 34 34 H 1.08007 * 119.56281 * 359.94395 * 17 16 15 35 35 H 1.08007 * 119.46405 * 179.97438 * 18 17 16 36 36 H 1.08002 * 120.12383 * 179.97438 * 19 18 17 37 37 H 1.08003 * 119.12024 * 179.72520 * 22 21 20 38 38 H 1.08001 * 120.02335 * 179.97438 * 23 22 21 39 39 H 1.08007 * 120.92795 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 16 1.3380 -5.2331 -0.0013 12 8 0.6645 -5.4194 -1.2384 13 8 0.6637 -5.4200 1.2355 14 7 2.5201 -6.3928 -0.0005 15 6 3.4178 -6.5231 1.1499 16 6 4.1378 -7.8449 1.0781 17 6 3.7112 -8.8988 1.8277 18 6 4.3659 -10.1272 1.7718 19 6 5.4488 -10.3101 0.9678 20 6 5.9225 -9.2446 0.1831 21 7 6.9805 -9.3963 -0.6201 22 6 7.4234 -8.4074 -1.3578 23 6 6.8134 -7.1547 -1.3475 24 6 5.7245 -6.9332 -0.5536 25 6 5.2520 -7.9974 0.2377 26 1 -0.4849 0.8401 0.0004 27 1 0.6239 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8717 -3.6044 0.8895 30 1 2.8718 -3.6044 -0.8905 31 1 2.6182 -6.9858 -0.7619 32 1 2.8370 -6.4752 2.0711 33 1 4.1455 -5.7117 1.1366 34 1 2.8542 -8.7806 2.4743 35 1 4.0084 -10.9478 2.3764 36 1 5.9451 -11.2688 0.9367 37 1 8.2837 -8.5681 -1.9906 38 1 7.2020 -6.3594 -1.9663 39 1 5.2391 -5.9686 -0.5335 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872575325.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:00 Heat of formation + Delta-G solvation = -28.179247 kcal Electronic energy + Delta-G solvation = -23769.427233 eV Core-core repulsion = 20189.634861 eV Total energy + Delta-G solvation = -3579.792371 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.18582 -37.77577 -36.65149 -35.69404 -35.45107 -33.93748 -33.18043 -31.21022 -30.82427 -30.47128 -25.99619 -25.64671 -24.42961 -23.86582 -21.73597 -21.19292 -19.07107 -18.45289 -17.58739 -17.37075 -17.18721 -16.51088 -16.12616 -15.49639 -15.00918 -14.82142 -14.66841 -14.58935 -14.45807 -13.93724 -13.74889 -13.43079 -13.18399 -12.91248 -12.53644 -12.28575 -11.91167 -11.79999 -11.65932 -11.62265 -11.55706 -11.46587 -11.10197 -11.01153 -10.77039 -10.48594 -10.42304 -9.86347 -9.77237 -9.58074 -9.10333 -9.05758 -8.53478 -8.51641 -6.15794 -4.21777 0.05812 0.54221 0.72013 1.68501 2.61377 3.13821 3.24487 3.29734 3.31147 3.84611 4.00083 4.11964 4.21155 4.34477 4.44705 4.52185 4.57099 4.66791 4.74807 4.88104 4.98539 5.11201 5.18311 5.19528 5.29529 5.49865 5.58079 5.60429 5.66565 5.74030 5.80041 5.83577 6.07314 6.17960 6.27174 6.42201 6.55069 6.97147 7.25620 7.31768 7.62020 7.76539 8.13283 8.81314 9.43164 10.95170 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.017154 B = 0.003176 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.897711 B = 8814.536076 C = 9826.713015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.590 4.590 11 S 2.591 3.409 12 O -0.965 6.965 13 O -0.965 6.965 14 N -1.125 6.125 15 C 0.153 3.847 16 C -0.072 4.072 17 C -0.096 4.096 18 C -0.100 4.100 19 C -0.091 4.091 20 C 0.123 3.877 21 N -0.476 5.476 22 C 0.130 3.870 23 C -0.174 4.174 24 C -0.057 4.057 25 C -0.090 4.090 26 H 0.266 0.734 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.413 0.587 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.159 0.841 38 H 0.140 0.860 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.607 -18.410 1.193 22.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.723 4.723 11 S 2.689 3.311 12 O -0.955 6.955 13 O -0.955 6.955 14 N -0.882 5.882 15 C 0.027 3.973 16 C -0.074 4.074 17 C -0.115 4.115 18 C -0.120 4.120 19 C -0.110 4.110 20 C 0.002 3.998 21 N -0.184 5.184 22 C -0.042 4.042 23 C -0.194 4.194 24 C -0.083 4.083 25 C -0.093 4.093 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.247 0.753 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.176 0.824 38 H 0.157 0.843 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 12.818 -19.245 1.416 23.166 hybrid contribution 0.778 1.832 -0.379 2.026 sum 13.596 -17.413 1.037 22.116 Atomic orbital electron populations 1.69946 1.06125 1.27362 1.49348 1.25070 0.94975 0.99548 0.94858 0.86526 0.79499 0.82523 0.78698 1.20082 1.21060 1.20062 1.20954 0.93001 0.89765 1.52437 0.92094 1.18960 0.92680 0.90499 0.98950 1.30455 1.13777 1.18027 1.10050 1.05633 0.74673 0.76579 0.74201 1.93561 1.71450 1.85294 1.45186 1.93541 1.71290 1.84948 1.45700 1.55923 1.52820 1.52419 1.27032 1.20197 0.92639 0.94335 0.90091 1.19638 0.94869 0.96038 0.96846 1.20989 0.99586 0.92240 0.98727 1.20937 0.95210 0.97529 0.98278 1.20831 0.96574 0.98098 0.95505 1.18879 0.92533 0.92503 0.95858 1.68055 1.11745 1.32659 1.05969 1.22982 0.97928 0.88546 0.94760 1.21949 0.97402 0.99132 1.00936 1.21650 0.94875 0.98720 0.93021 1.18707 0.96904 0.94895 0.98756 0.92430 0.94811 0.94778 0.86254 0.86064 0.75339 0.88720 0.90570 0.84790 0.84975 0.84716 0.82397 0.84254 0.83796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.52 -14.06 9.11 -34.44 -0.31 -14.38 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.03 0.70 4.98 -27.89 -0.14 0.56 16 10 C -0.59 -10.53 6.01 37.16 0.22 -10.31 16 11 S 2.59 43.75 5.46 -107.50 -0.59 43.16 16 12 O -0.96 -19.43 18.08 -57.54 -1.04 -20.47 16 13 O -0.96 -19.04 17.49 -57.54 -1.01 -20.05 16 14 N -1.12 -13.67 5.88 -11.65 -0.07 -13.74 16 15 C 0.15 1.61 5.53 -5.19 -0.03 1.58 16 16 C -0.07 -0.73 5.28 -104.55 -0.55 -1.28 16 17 C -0.10 -0.88 9.58 -39.92 -0.38 -1.27 16 18 C -0.10 -0.82 9.94 -39.95 -0.40 -1.22 16 19 C -0.09 -0.86 9.98 -39.47 -0.39 -1.25 16 20 C 0.12 1.38 6.60 -84.86 -0.56 0.82 16 21 N -0.48 -5.32 10.34 -10.98 -0.11 -5.44 16 22 C 0.13 1.15 11.15 -17.46 -0.19 0.95 16 23 C -0.17 -1.44 10.03 -39.78 -0.40 -1.84 16 24 C -0.06 -0.54 9.37 -39.23 -0.37 -0.91 16 25 C -0.09 -0.97 5.74 -106.80 -0.61 -1.58 16 26 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.12 1.85 8.14 -51.93 -0.42 1.43 16 30 H 0.12 1.91 8.14 -51.92 -0.42 1.49 16 31 H 0.41 4.55 8.61 -34.47 -0.30 4.25 16 32 H 0.09 0.98 7.53 -51.93 -0.39 0.59 16 33 H 0.08 0.67 7.02 -51.93 -0.36 0.30 16 34 H 0.13 1.05 8.01 -52.48 -0.42 0.63 16 35 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 36 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 37 H 0.16 0.90 8.06 -52.48 -0.42 0.47 16 38 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 39 H 0.14 1.19 6.69 -52.48 -0.35 0.84 16 LS Contribution 348.87 15.07 5.26 5.26 Total: -1.00 -36.01 348.87 -10.81 -46.82 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -4.75 Total: 2.62 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: -4.22 Total: -28.60 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.55 Total: -44.54 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -2.05 Total: -40.52 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 43.75 SS G_CDS: -0.59 Total: 43.16 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.01 -10.81 -46.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872575325.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.637 kcal (2) G-P(sol) polarization free energy of solvation -36.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds