Wall clock time and date at job start Tue Mar 31 2020 12:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00161 * 2 1 4 4 H 1.48505 * 109.46839 * 240.00188 * 3 2 1 5 5 H 1.48498 * 109.47361 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46988 * 120.00367 * 3 2 1 7 7 C 1.37882 * 119.99411 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99382 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00308 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46764 * 180.02562 * 9 7 2 11 11 S 1.81406 * 109.46750 * 180.02562 * 10 9 7 12 12 O 1.42090 * 110.54737 * 68.37498 * 11 10 9 13 13 O 1.42105 * 110.54097 * 291.62075 * 11 10 9 14 14 N 1.65594 * 104.45098 * 180.02562 * 11 10 9 15 15 C 1.46504 * 120.00257 * 64.99294 * 14 11 10 16 16 C 1.50699 * 109.47416 * 165.00330 * 15 14 11 17 17 C 1.36178 * 120.19431 * 260.00872 * 16 15 14 18 18 C 1.39313 * 120.86990 * 179.97438 * 17 16 15 19 19 C 1.36109 * 121.06827 * 359.97438 * 18 17 16 20 20 C 1.40554 * 119.74449 * 0.27978 * 19 18 17 21 21 N 1.33689 * 121.07244 * 180.27964 * 20 19 18 22 22 C 1.31084 * 121.32245 * 179.74423 * 21 20 19 23 23 C 1.39331 * 121.74804 * 359.69691 * 22 21 20 24 24 C 1.36566 * 119.94360 * 0.02562 * 23 22 21 25 25 C 1.40393 * 120.19573 * 79.98018 * 16 15 14 26 26 H 0.97003 * 119.99418 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47111 * 60.00055 * 9 7 2 28 28 H 1.08999 * 109.46990 * 300.00066 * 9 7 2 29 29 H 1.08996 * 109.47341 * 60.00724 * 10 9 7 30 30 H 1.08999 * 109.47320 * 299.99740 * 10 9 7 31 31 H 0.97001 * 120.00052 * 245.00492 * 14 11 10 32 32 H 1.09004 * 109.46901 * 45.00439 * 15 14 11 33 33 H 1.08999 * 109.47148 * 285.00489 * 15 14 11 34 34 H 1.08007 * 119.56281 * 359.94395 * 17 16 15 35 35 H 1.08007 * 119.46405 * 179.97438 * 18 17 16 36 36 H 1.08002 * 120.12383 * 179.97438 * 19 18 17 37 37 H 1.08003 * 119.12024 * 179.72520 * 22 21 20 38 38 H 1.08001 * 120.02335 * 179.97438 * 23 22 21 39 39 H 1.08007 * 120.92795 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 16 1.3380 -5.2331 -0.0013 12 8 0.6645 -5.4194 -1.2384 13 8 0.6637 -5.4200 1.2355 14 7 2.5201 -6.3928 -0.0005 15 6 3.4178 -6.5231 1.1499 16 6 4.1378 -7.8449 1.0781 17 6 3.7112 -8.8988 1.8277 18 6 4.3659 -10.1272 1.7718 19 6 5.4488 -10.3101 0.9678 20 6 5.9225 -9.2446 0.1831 21 7 6.9805 -9.3963 -0.6201 22 6 7.4234 -8.4074 -1.3578 23 6 6.8134 -7.1547 -1.3475 24 6 5.7245 -6.9332 -0.5536 25 6 5.2520 -7.9974 0.2377 26 1 -0.4849 0.8401 0.0004 27 1 0.6239 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8717 -3.6044 0.8895 30 1 2.8718 -3.6044 -0.8905 31 1 2.6182 -6.9858 -0.7619 32 1 2.8370 -6.4752 2.0711 33 1 4.1455 -5.7117 1.1366 34 1 2.8542 -8.7806 2.4743 35 1 4.0084 -10.9478 2.3764 36 1 5.9451 -11.2688 0.9367 37 1 8.2837 -8.5681 -1.9906 38 1 7.2020 -6.3594 -1.9663 39 1 5.2391 -5.9686 -0.5335 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872575325.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:59 Heat of formation + Delta-G solvation = -54.152427 kcal Electronic energy + Delta-G solvation = -23770.553514 eV Core-core repulsion = 20189.634861 eV Total energy + Delta-G solvation = -3580.918653 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.86618 -38.51535 -38.11703 -37.01897 -36.47618 -35.87116 -33.96393 -33.10416 -31.48271 -31.22314 -27.57000 -26.82025 -25.10545 -24.53480 -23.58218 -21.95079 -20.34947 -19.27373 -18.95941 -18.34655 -18.01056 -17.86613 -17.29681 -17.00206 -16.51595 -16.04439 -15.65557 -15.38277 -15.26301 -15.03962 -14.64727 -14.53706 -14.38636 -13.90508 -13.72723 -13.63320 -13.29389 -13.18779 -13.09613 -12.88677 -12.78031 -12.60550 -12.42889 -12.23625 -12.19713 -12.15023 -11.73001 -11.48342 -11.18265 -10.61984 -10.49674 -10.38482 -9.72885 -9.22501 -8.24207 -6.37963 -0.77455 -0.51976 -0.13092 0.95881 1.42638 1.45608 1.53668 1.82587 2.07290 2.39556 2.81827 3.09601 3.13183 3.26617 3.37962 3.45446 3.80708 3.85119 3.91488 4.01544 4.10412 4.16463 4.23718 4.31213 4.42610 4.54682 4.62087 4.76685 4.81605 4.90936 5.00137 5.12055 5.16175 5.30346 5.31277 5.40740 5.50288 5.61052 5.70444 5.90052 6.01496 6.08264 6.76129 6.94086 7.32315 8.87822 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.017154 B = 0.003176 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.897711 B = 8814.536076 C = 9826.713015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.019 3.981 10 C -0.586 4.586 11 S 2.620 3.380 12 O -1.000 7.000 13 O -0.995 6.995 14 N -1.105 6.105 15 C 0.146 3.854 16 C -0.081 4.081 17 C -0.101 4.101 18 C -0.096 4.096 19 C -0.102 4.102 20 C 0.098 3.902 21 N -0.503 5.503 22 C 0.125 3.875 23 C -0.171 4.171 24 C -0.071 4.071 25 C -0.103 4.103 26 H 0.267 0.733 27 H 0.005 0.995 28 H 0.007 0.993 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.422 0.578 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.146 0.854 35 H 0.159 0.841 36 H 0.144 0.856 37 H 0.186 0.814 38 H 0.166 0.834 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.004 -18.549 1.248 24.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.796 3.204 4 H -0.188 1.188 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.577 4.577 8 H 0.097 0.903 9 C -0.020 4.020 10 C -0.719 4.719 11 S 2.718 3.282 12 O -0.990 6.990 13 O -0.985 6.985 14 N -0.866 5.866 15 C 0.021 3.979 16 C -0.084 4.084 17 C -0.120 4.120 18 C -0.115 4.115 19 C -0.121 4.121 20 C -0.022 4.022 21 N -0.211 5.211 22 C -0.047 4.047 23 C -0.191 4.191 24 C -0.097 4.097 25 C -0.106 4.106 26 H 0.075 0.925 27 H 0.023 0.977 28 H 0.026 0.974 29 H 0.166 0.834 30 H 0.165 0.835 31 H 0.257 0.743 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.164 0.836 35 H 0.177 0.823 36 H 0.162 0.838 37 H 0.203 0.797 38 H 0.184 0.816 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 15.227 -19.391 1.469 24.699 hybrid contribution 0.095 1.765 -0.399 1.812 sum 15.322 -17.626 1.070 23.379 Atomic orbital electron populations 1.70101 1.08100 1.28323 1.50961 1.26111 0.95811 1.03863 0.94484 0.85387 0.78131 0.77402 0.79479 1.18769 1.21272 1.18689 1.21511 0.94083 0.90711 1.51373 0.90331 1.18824 0.93681 0.93108 0.96387 1.30332 1.12798 1.15980 1.12767 1.04484 0.74601 0.76483 0.72679 1.93508 1.73015 1.85856 1.46651 1.93501 1.72611 1.85434 1.46914 1.55408 1.52225 1.50891 1.28093 1.20453 0.92719 0.95637 0.89134 1.19603 0.95105 0.96043 0.97619 1.21268 0.99842 0.92376 0.98524 1.21215 0.94464 0.97965 0.97900 1.21069 0.97096 0.98295 0.95623 1.19207 0.93093 0.93305 0.96613 1.68081 1.12308 1.33842 1.06911 1.23533 0.98453 0.88423 0.94322 1.22271 0.96718 0.99593 1.00509 1.21895 0.95553 0.98963 0.93313 1.18853 0.97210 0.95227 0.99280 0.92470 0.97667 0.97431 0.83446 0.83543 0.74258 0.88561 0.88364 0.83629 0.82299 0.83810 0.79678 0.81619 0.82677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.13 13.29 21.45 0.28 -55.85 16 2 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 3 Si 0.97 42.23 29.54 68.60 2.03 44.25 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.54 -28.75 9.11 25.60 0.23 -28.52 16 8 H 0.08 3.81 7.74 -2.91 -0.02 3.79 16 9 C 0.02 0.95 4.98 29.85 0.15 1.10 16 10 C -0.59 -20.18 6.01 71.98 0.43 -19.75 16 11 S 2.62 87.02 5.46 -56.49 -0.31 86.71 16 12 O -1.00 -40.44 18.08 -127.65 -2.31 -42.75 16 13 O -0.99 -39.17 17.49 -127.65 -2.23 -41.40 16 14 N -1.11 -25.01 5.88 -190.78 -1.12 -26.13 16 15 C 0.15 2.75 5.53 85.63 0.47 3.22 16 16 C -0.08 -1.52 5.28 -19.82 -0.10 -1.63 16 17 C -0.10 -1.69 9.58 22.05 0.21 -1.48 16 18 C -0.10 -1.41 9.94 22.03 0.22 -1.19 16 19 C -0.10 -1.82 9.98 22.34 0.22 -1.60 16 20 C 0.10 2.12 6.60 40.28 0.27 2.38 16 21 N -0.50 -10.74 10.34 -188.64 -1.95 -12.69 16 22 C 0.12 1.97 11.15 85.07 0.95 2.92 16 23 C -0.17 -2.43 10.03 22.14 0.22 -2.21 16 24 C -0.07 -1.21 9.37 22.50 0.21 -1.00 16 25 C -0.10 -2.07 5.74 -21.28 -0.12 -2.19 16 26 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 27 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.15 4.20 8.14 -2.39 -0.02 4.18 16 30 H 0.15 4.28 8.14 -2.39 -0.02 4.26 16 31 H 0.42 8.59 8.61 -96.75 -0.83 7.76 16 32 H 0.10 1.82 7.53 -2.38 -0.02 1.80 16 33 H 0.10 1.43 7.02 -2.39 -0.02 1.41 16 34 H 0.15 2.01 8.01 -2.91 -0.02 1.99 16 35 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 36 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.19 1.66 8.06 -2.91 -0.02 1.63 16 38 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 39 H 0.16 2.14 6.69 -2.91 -0.02 2.12 16 Total: -1.00 -79.24 348.87 -1.54 -80.78 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.25 Total: 16.78 kcal Atomic # 6 Polarization: -53.53 SS G_CDS: 3.82 Total: -49.71 kcal Atomic # 7 Polarization: -91.88 SS G_CDS: -2.79 Total: -94.67 kcal Atomic # 8 Polarization: -79.61 SS G_CDS: -4.54 Total: -84.15 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: 87.02 SS G_CDS: -0.31 Total: 86.71 kcal Total: -79.24 -1.54 -80.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872575325.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.627 kcal (2) G-P(sol) polarization free energy of solvation -79.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds