Wall clock time and date at job start Tue Mar 31 2020 13:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38429 * 122.53782 * 2 1 4 4 C 1.33388 * 114.91843 * 180.27785 * 3 2 1 5 5 S 1.75885 * 109.59577 * 359.77023 * 4 3 2 6 6 C 1.33388 * 122.54213 * 179.83623 * 2 1 3 7 7 C 1.50708 * 125.20187 * 0.02562 * 6 2 1 8 8 O 1.45195 * 109.47059 * 89.71675 * 7 6 2 9 9 C 1.34757 * 116.99661 * 180.02562 * 8 7 6 10 10 O 1.21519 * 120.00289 * 359.97438 * 9 8 7 11 11 C 1.47288 * 119.99744 * 180.02562 * 9 8 7 12 12 C 1.41343 * 126.43131 * 359.97077 * 11 9 8 13 13 N 1.30425 * 108.01629 * 180.02562 * 12 11 9 14 14 N 1.39932 * 108.91880 * 359.97438 * 13 12 11 15 15 C 1.46504 * 125.74487 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.46925 * 269.97380 * 15 14 13 17 17 H 1.08004 * 119.99967 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00174 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99745 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00085 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47103 * 90.00298 * 20 18 16 22 22 H 1.48506 * 109.47010 * 210.00105 * 20 18 16 23 23 H 1.48493 * 109.47165 * 330.00239 * 20 18 16 24 24 C 1.34231 * 108.51244 * 0.02562 * 14 13 12 25 25 C 1.50696 * 126.29226 * 180.26391 * 24 14 13 26 26 H 1.09004 * 109.46726 * 270.16655 * 1 2 3 27 27 H 1.08996 * 109.47264 * 30.16464 * 1 2 3 28 28 H 1.08996 * 109.47136 * 150.17015 * 1 2 3 29 29 H 1.07998 * 122.54250 * 0.04615 * 3 2 1 30 30 H 1.07997 * 125.20105 * 179.79352 * 4 3 2 31 31 H 1.09005 * 109.46870 * 329.71822 * 7 6 2 32 32 H 1.08997 * 109.46799 * 209.71799 * 7 6 2 33 33 H 1.08006 * 125.98937 * 0.02562 * 12 11 9 34 34 H 1.08994 * 109.46858 * 29.97203 * 15 14 13 35 35 H 1.08995 * 109.47357 * 149.97612 * 15 14 13 36 36 H 0.97003 * 119.99913 * 179.97438 * 19 18 16 37 37 H 1.08997 * 109.47320 * 269.71403 * 25 24 14 38 38 H 1.09001 * 109.47680 * 29.71290 * 25 24 14 39 39 H 1.09005 * 109.47158 * 149.71511 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9902 -0.0059 5 16 3.9387 -0.7304 -0.0052 6 6 2.2246 -1.1244 0.0032 7 6 1.6538 -2.5192 0.0066 8 8 1.4647 -2.9682 -1.3612 9 6 0.9575 -4.2045 -1.5346 10 8 0.6812 -4.8889 -0.5692 11 6 0.7390 -4.7268 -2.8944 12 6 1.0109 -4.0522 -4.1063 13 7 0.6833 -4.8430 -5.0904 14 7 0.1940 -6.0437 -4.5640 15 6 -0.2781 -7.1906 -5.3437 16 6 -1.7550 -7.0462 -5.6058 17 1 -2.2887 -6.1858 -5.2295 18 6 -2.4250 -8.0118 -6.3268 19 7 -1.7751 -9.0591 -6.7853 20 14 -4.2556 -7.8323 -6.6522 21 1 -4.4623 -7.0932 -7.9236 22 1 -4.8742 -9.1784 -6.7561 23 1 -4.8857 -7.0828 -5.5359 24 6 0.2299 -5.9676 -3.2243 25 6 -0.1999 -7.0413 -2.2581 26 1 -0.3633 0.0030 1.0277 27 1 -0.3633 0.8885 -0.5164 28 1 -0.3633 -0.8915 -0.5112 29 1 1.7965 2.1464 0.0007 30 1 4.3077 1.7823 -0.0100 31 1 0.6946 -2.5180 0.5245 32 1 2.3420 -3.1921 0.5181 33 1 1.4185 -3.0565 -4.2009 34 1 0.2571 -7.2299 -6.2924 35 1 -0.0963 -8.1090 -4.7856 36 1 -2.2465 -9.7387 -7.2923 37 1 -1.2551 -6.9124 -2.0175 38 1 -0.0477 -8.0206 -2.7119 39 1 0.3924 -6.9675 -1.3460 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889881825.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:10 Heat of formation + Delta-G solvation = 9.204264 kcal Electronic energy + Delta-G solvation = -23438.830358 eV Core-core repulsion = 19860.659057 eV Total energy + Delta-G solvation = -3578.171301 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.90263 -39.73253 -38.52958 -36.08820 -33.94210 -32.20197 -31.87656 -31.22375 -29.46883 -27.62438 -26.76862 -25.35326 -23.60804 -22.83820 -22.21231 -20.32276 -19.01145 -18.65628 -17.68188 -17.39040 -16.81285 -16.18423 -16.02614 -15.41357 -15.03980 -14.58947 -14.39520 -14.16240 -13.69502 -13.57414 -13.18960 -12.92829 -12.80344 -12.56292 -12.41407 -12.23032 -12.15855 -12.05649 -11.84795 -11.82641 -11.55907 -11.15573 -10.98936 -10.91229 -10.52280 -10.44724 -10.32288 -9.97332 -9.86189 -8.96517 -8.73904 -8.65944 -8.55402 -8.08606 -6.36617 -4.44718 0.61967 1.37161 1.75174 1.89741 2.32158 2.70542 2.98884 3.16878 3.23393 3.27201 3.44273 3.65480 4.21998 4.49083 4.65496 4.84821 4.97913 5.07923 5.13706 5.15647 5.26551 5.29052 5.33538 5.42794 5.48451 5.66226 5.74962 5.78607 5.94624 6.02849 6.15651 6.26183 6.33660 6.36494 6.68883 6.76084 6.86454 7.12139 7.50936 7.70043 7.73439 8.14734 8.33584 8.60544 9.22444 10.71656 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.024273 B = 0.002548 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.263149 B =10985.179724 C =11193.841997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.077 4.077 3 C -0.135 4.135 4 C -0.206 4.206 5 S 0.117 5.883 6 C -0.193 4.193 7 C 0.144 3.856 8 O -0.349 6.349 9 C 0.552 3.448 10 O -0.530 6.530 11 C -0.319 4.319 12 C 0.081 3.919 13 N -0.297 5.297 14 N -0.310 5.310 15 C 0.250 3.750 16 C -0.541 4.541 17 H 0.066 0.934 18 C 0.068 3.932 19 N -0.889 5.889 20 Si 0.909 3.091 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.271 1.271 24 C 0.173 3.827 25 C -0.096 4.096 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.142 0.858 30 H 0.166 0.834 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.185 0.815 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.270 0.730 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.432 16.100 14.709 23.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.090 4.090 3 C -0.166 4.166 4 C -0.342 4.342 5 S 0.383 5.617 6 C -0.311 4.311 7 C 0.068 3.932 8 O -0.267 6.267 9 C 0.399 3.601 10 O -0.420 6.420 11 C -0.332 4.332 12 C -0.106 4.106 13 N -0.116 5.116 14 N -0.086 5.086 15 C 0.133 3.867 16 C -0.580 4.580 17 H 0.084 0.916 18 C -0.136 4.136 19 N -0.526 5.526 20 Si 0.735 3.265 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.196 1.196 24 C 0.035 3.965 25 C -0.154 4.154 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.159 0.841 30 H 0.183 0.817 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.201 0.799 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.623 14.626 13.478 22.095 hybrid contribution -2.099 1.108 0.603 2.449 sum 7.525 15.734 14.081 22.415 Atomic orbital electron populations 1.20611 0.89480 1.03505 1.02442 1.18953 0.97699 0.91457 1.00894 1.20054 0.92857 0.99266 1.04395 1.25667 0.99851 0.99266 1.09440 1.84335 1.05139 1.00090 1.72139 1.23894 0.96215 0.97545 1.13402 1.21018 1.01120 0.89167 0.81893 1.86632 1.76431 1.33325 1.30316 1.20072 0.72863 0.78379 0.88772 1.90761 1.50644 1.58401 1.42234 1.18810 1.25779 0.97707 0.90917 1.23924 0.98126 0.99507 0.89039 1.77221 1.18580 0.92946 1.22844 1.49437 1.42206 1.13359 1.03640 1.19908 0.96000 0.78915 0.91838 1.21240 0.92025 1.08247 1.36466 0.91594 1.24922 0.99466 0.94568 0.94663 1.69911 1.36852 1.10245 1.35631 0.86311 0.83475 0.77647 0.79030 1.20208 1.20766 1.19571 1.21450 0.93648 0.95148 0.86276 1.20622 1.02952 0.94946 0.96863 0.90975 0.91075 0.90951 0.84078 0.81696 0.89372 0.90335 0.79854 0.92300 0.92423 0.92058 0.89490 0.90444 0.88875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 9.60 36.01 0.35 -0.53 16 2 C -0.08 -0.77 5.80 -106.25 -0.62 -1.39 16 3 C -0.14 -1.16 9.98 -41.21 -0.41 -1.57 16 4 C -0.21 -1.69 11.23 29.04 0.33 -1.36 16 5 S 0.12 1.13 23.33 -107.50 -2.51 -1.37 16 6 C -0.19 -2.14 6.15 -36.00 -0.22 -2.37 16 7 C 0.14 1.76 5.33 36.01 0.19 1.95 16 8 O -0.35 -5.24 10.05 -40.65 -0.41 -5.65 16 9 C 0.55 9.50 7.95 34.41 0.27 9.77 16 10 O -0.53 -9.64 14.64 -19.28 -0.28 -9.92 16 11 C -0.32 -6.00 6.13 -105.08 -0.64 -6.65 16 12 C 0.08 1.51 11.87 -16.97 -0.20 1.30 16 13 N -0.30 -6.47 12.50 30.87 0.39 -6.08 16 14 N -0.31 -6.98 3.56 -57.76 -0.21 -7.19 16 15 C 0.25 6.14 5.97 -5.19 -0.03 6.11 16 16 C -0.54 -14.41 9.39 -34.44 -0.32 -14.74 16 17 H 0.07 1.80 7.81 -52.48 -0.41 1.39 16 18 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 19 N -0.89 -24.32 13.29 55.43 0.74 -23.58 16 20 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 C 0.17 3.48 7.01 -81.59 -0.57 2.91 16 25 C -0.10 -1.66 9.56 36.00 0.34 -1.32 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 28 H 0.07 0.72 7.26 -51.93 -0.38 0.34 16 29 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 30 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.09 1.01 7.33 -51.93 -0.38 0.63 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.18 2.73 8.06 -52.48 -0.42 2.31 16 34 H 0.06 1.54 8.14 -51.93 -0.42 1.11 16 35 H 0.06 1.39 7.01 -51.93 -0.36 1.03 16 36 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.08 1.30 7.04 -51.93 -0.37 0.94 16 39 H 0.09 1.52 6.51 -51.93 -0.34 1.18 16 LS Contribution 355.76 15.07 5.36 5.36 Total: -1.00 -29.81 355.76 -8.33 -38.14 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.75 Total: 0.88 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -1.64 Total: -6.17 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.92 Total: -36.85 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.69 Total: -15.57 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.51 Total: -1.37 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.81 -8.33 -38.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889881825.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.347 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds