Wall clock time and date at job start Tue Mar 31 2020 13:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38429 * 122.53782 * 2 1 4 4 C 1.33388 * 114.91843 * 180.27785 * 3 2 1 5 5 S 1.75885 * 109.59577 * 359.77023 * 4 3 2 6 6 C 1.33388 * 122.54213 * 179.83623 * 2 1 3 7 7 C 1.50708 * 125.20187 * 0.02562 * 6 2 1 8 8 O 1.45195 * 109.47059 * 89.71675 * 7 6 2 9 9 C 1.34757 * 116.99661 * 180.02562 * 8 7 6 10 10 O 1.21519 * 120.00289 * 359.97438 * 9 8 7 11 11 C 1.47288 * 119.99744 * 180.02562 * 9 8 7 12 12 C 1.41343 * 126.43131 * 359.97077 * 11 9 8 13 13 N 1.30425 * 108.01629 * 180.02562 * 12 11 9 14 14 N 1.39932 * 108.91880 * 359.97438 * 13 12 11 15 15 C 1.46504 * 125.74487 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.46925 * 269.97380 * 15 14 13 17 17 H 1.08004 * 119.99967 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00174 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99745 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00085 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47103 * 90.00298 * 20 18 16 22 22 H 1.48506 * 109.47010 * 210.00105 * 20 18 16 23 23 H 1.48493 * 109.47165 * 330.00239 * 20 18 16 24 24 C 1.34231 * 108.51244 * 0.02562 * 14 13 12 25 25 C 1.50696 * 126.29226 * 180.26391 * 24 14 13 26 26 H 1.09004 * 109.46726 * 270.16655 * 1 2 3 27 27 H 1.08996 * 109.47264 * 30.16464 * 1 2 3 28 28 H 1.08996 * 109.47136 * 150.17015 * 1 2 3 29 29 H 1.07998 * 122.54250 * 0.04615 * 3 2 1 30 30 H 1.07997 * 125.20105 * 179.79352 * 4 3 2 31 31 H 1.09005 * 109.46870 * 329.71822 * 7 6 2 32 32 H 1.08997 * 109.46799 * 209.71799 * 7 6 2 33 33 H 1.08006 * 125.98937 * 0.02562 * 12 11 9 34 34 H 1.08994 * 109.46858 * 29.97203 * 15 14 13 35 35 H 1.08995 * 109.47357 * 149.97612 * 15 14 13 36 36 H 0.97003 * 119.99913 * 179.97438 * 19 18 16 37 37 H 1.08997 * 109.47320 * 269.71403 * 25 24 14 38 38 H 1.09001 * 109.47680 * 29.71290 * 25 24 14 39 39 H 1.09005 * 109.47158 * 149.71511 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9902 -0.0059 5 16 3.9387 -0.7304 -0.0052 6 6 2.2246 -1.1244 0.0032 7 6 1.6538 -2.5192 0.0066 8 8 1.4647 -2.9682 -1.3612 9 6 0.9575 -4.2045 -1.5346 10 8 0.6812 -4.8889 -0.5692 11 6 0.7390 -4.7268 -2.8944 12 6 1.0109 -4.0522 -4.1063 13 7 0.6833 -4.8430 -5.0904 14 7 0.1940 -6.0437 -4.5640 15 6 -0.2781 -7.1906 -5.3437 16 6 -1.7550 -7.0462 -5.6058 17 1 -2.2887 -6.1858 -5.2295 18 6 -2.4250 -8.0118 -6.3268 19 7 -1.7751 -9.0591 -6.7853 20 14 -4.2556 -7.8323 -6.6522 21 1 -4.4623 -7.0932 -7.9236 22 1 -4.8742 -9.1784 -6.7561 23 1 -4.8857 -7.0828 -5.5359 24 6 0.2299 -5.9676 -3.2243 25 6 -0.1999 -7.0413 -2.2581 26 1 -0.3633 0.0030 1.0277 27 1 -0.3633 0.8885 -0.5164 28 1 -0.3633 -0.8915 -0.5112 29 1 1.7965 2.1464 0.0007 30 1 4.3077 1.7823 -0.0100 31 1 0.6946 -2.5180 0.5245 32 1 2.3420 -3.1921 0.5181 33 1 1.4185 -3.0565 -4.2009 34 1 0.2571 -7.2299 -6.2924 35 1 -0.0963 -8.1090 -4.7856 36 1 -2.2465 -9.7387 -7.2923 37 1 -1.2551 -6.9124 -2.0175 38 1 -0.0477 -8.0206 -2.7119 39 1 0.3924 -6.9675 -1.3460 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889881825.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:09 Heat of formation + Delta-G solvation = -5.677355 kcal Electronic energy + Delta-G solvation = -23439.475673 eV Core-core repulsion = 19860.659057 eV Total energy + Delta-G solvation = -3578.816616 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.44395 -41.01409 -39.32066 -37.34334 -35.84109 -33.92715 -32.97106 -32.53271 -30.34526 -29.28223 -28.33986 -26.29493 -25.38068 -23.91418 -23.30388 -21.80756 -20.53384 -19.44761 -18.93959 -18.73151 -18.51057 -17.41627 -17.25342 -16.78664 -16.29114 -16.14420 -15.88944 -15.13302 -14.90685 -14.69435 -14.40766 -14.30101 -14.13676 -13.73203 -13.68870 -13.60807 -13.43519 -13.15203 -13.01866 -12.94780 -12.84310 -12.70871 -12.57358 -12.31993 -11.86870 -11.86269 -11.78565 -11.53893 -11.33988 -10.76465 -10.34328 -9.70466 -9.67984 -9.27643 -8.38580 -6.54769 -0.12825 0.41059 0.65132 1.05767 1.16911 1.38024 1.38330 1.41514 1.50928 1.69131 2.10853 2.21432 2.32801 2.94320 3.60625 3.65324 3.78131 3.93248 3.99075 4.05502 4.14668 4.29035 4.49795 4.52265 4.55597 4.60870 4.69660 4.76492 4.80370 4.87249 4.96559 5.10715 5.11517 5.12196 5.35237 5.48127 5.48510 5.57644 5.58491 5.73150 5.95728 6.53273 6.70289 6.86063 7.16446 8.69580 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.024273 B = 0.002548 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.263149 B =10985.179724 C =11193.841997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.075 4.075 3 C -0.146 4.146 4 C -0.192 4.192 5 S 0.100 5.900 6 C -0.223 4.223 7 C 0.143 3.857 8 O -0.348 6.348 9 C 0.559 3.441 10 O -0.540 6.540 11 C -0.322 4.322 12 C 0.097 3.903 13 N -0.334 5.334 14 N -0.333 5.333 15 C 0.266 3.734 16 C -0.557 4.557 17 H 0.053 0.947 18 C 0.025 3.975 19 N -0.916 5.916 20 Si 0.971 3.029 21 H -0.274 1.274 22 H -0.271 1.271 23 H -0.268 1.268 24 C 0.162 3.838 25 C -0.091 4.091 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.055 0.945 29 H 0.166 0.834 30 H 0.193 0.807 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.220 0.780 34 H 0.034 0.966 35 H 0.057 0.943 36 H 0.275 0.725 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.136 18.170 15.792 25.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.089 4.089 3 C -0.176 4.176 4 C -0.328 4.328 5 S 0.366 5.634 6 C -0.340 4.340 7 C 0.068 3.932 8 O -0.265 6.265 9 C 0.407 3.593 10 O -0.432 6.432 11 C -0.335 4.335 12 C -0.090 4.090 13 N -0.153 5.153 14 N -0.109 5.109 15 C 0.147 3.853 16 C -0.595 4.595 17 H 0.071 0.929 18 C -0.176 4.176 19 N -0.554 5.554 20 Si 0.795 3.205 21 H -0.199 1.199 22 H -0.196 1.196 23 H -0.193 1.193 24 C 0.026 3.974 25 C -0.149 4.149 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.074 0.926 29 H 0.184 0.816 30 H 0.211 0.789 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.236 0.764 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.344 16.711 14.580 24.065 hybrid contribution -1.909 0.623 0.359 2.040 sum 7.435 17.335 14.939 24.061 Atomic orbital electron populations 1.20658 0.88774 1.03392 1.03296 1.19280 0.98443 0.91722 0.99408 1.20323 0.92970 0.99818 1.04461 1.26050 1.00430 0.98707 1.07620 1.84379 1.04614 1.01883 1.72530 1.23844 0.97021 0.97082 1.16021 1.21180 1.01617 0.90109 0.80280 1.86609 1.75660 1.31850 1.32398 1.19753 0.72740 0.78995 0.87853 1.90751 1.51128 1.58976 1.42384 1.19034 1.25103 0.97330 0.92041 1.24487 0.96213 1.00144 0.88156 1.77173 1.20321 0.93373 1.24441 1.49199 1.43987 1.13396 1.04319 1.19469 0.94828 0.79926 0.91047 1.21385 0.93112 1.08030 1.36958 0.92875 1.25711 1.03652 0.94109 0.94165 1.69990 1.38545 1.10837 1.35994 0.85351 0.78371 0.78021 0.78766 1.19945 1.19606 1.19295 1.21959 0.93370 0.96374 0.85730 1.20663 1.03258 0.94267 0.96663 0.89631 0.89617 0.92567 0.81635 0.78938 0.88896 0.90191 0.76395 0.94809 0.92570 0.91616 0.89122 0.90321 0.87693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 9.60 71.24 0.68 -0.89 16 2 C -0.07 -1.35 5.80 -20.92 -0.12 -1.47 16 3 C -0.15 -2.08 9.98 21.22 0.21 -1.87 16 4 C -0.19 -2.60 11.23 66.72 0.75 -1.85 16 5 S 0.10 1.80 23.33 -56.49 -1.32 0.48 16 6 C -0.22 -4.65 6.15 24.59 0.15 -4.49 16 7 C 0.14 3.37 5.33 71.24 0.38 3.75 16 8 O -0.35 -10.05 10.05 -56.68 -0.57 -10.62 16 9 C 0.56 18.74 7.95 70.20 0.56 19.30 16 10 O -0.54 -19.18 14.64 19.77 0.29 -18.89 16 11 C -0.32 -11.94 6.13 -20.16 -0.12 -12.07 16 12 C 0.10 3.52 11.87 85.67 1.02 4.54 16 13 N -0.33 -14.71 12.50 -56.25 -0.70 -15.41 16 14 N -0.33 -15.28 3.56 -336.66 -1.20 -16.48 16 15 C 0.27 13.47 5.97 85.63 0.51 13.98 16 16 C -0.56 -30.20 9.39 25.60 0.24 -29.96 16 17 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 18 C 0.03 1.34 5.46 84.65 0.46 1.80 16 19 N -0.92 -50.53 13.29 21.45 0.28 -50.25 16 20 Si 0.97 42.07 29.54 68.60 2.03 44.10 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 24 C 0.16 6.57 7.01 42.16 0.30 6.87 16 25 C -0.09 -3.14 9.56 71.23 0.68 -2.46 16 26 H 0.09 1.07 8.14 -2.38 -0.02 1.06 16 27 H 0.08 1.05 8.13 -2.39 -0.02 1.03 16 28 H 0.06 1.05 7.26 -2.39 -0.02 1.03 16 29 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 30 H 0.19 1.44 8.06 -2.91 -0.02 1.42 16 31 H 0.09 2.06 7.33 -2.38 -0.02 2.05 16 32 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.22 6.06 8.06 -2.91 -0.02 6.04 16 34 H 0.03 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 2.81 7.01 -2.39 -0.02 2.80 16 36 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 37 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 38 H 0.08 2.67 7.04 -2.39 -0.02 2.66 16 39 H 0.10 3.36 6.51 -2.38 -0.02 3.34 16 Total: -1.00 -63.78 355.76 5.58 -58.20 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 1.08 Total: 13.69 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 5.70 Total: -4.82 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -1.62 Total: -82.14 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.28 Total: -29.52 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -1.32 Total: 0.48 kcal Total: -63.78 5.58 -58.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889881825.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.518 kcal (2) G-P(sol) polarization free energy of solvation -63.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds