Wall clock time and date at job start Tue Mar 31 2020 12:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00043 * 2 1 4 4 H 1.48494 * 109.47066 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47295 * 240.00016 * 3 2 1 6 6 H 1.48505 * 109.46714 * 119.99940 * 3 2 1 7 7 C 1.37882 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00061 * 341.77484 * 7 2 1 9 9 C 1.50702 * 119.99807 * 161.78346 * 7 2 1 10 10 H 1.08996 * 109.50400 * 54.51635 * 9 7 2 11 11 C 1.53119 * 109.50169 * 294.43486 * 9 7 2 12 12 C 1.53120 * 109.15793 * 182.40723 * 11 9 7 13 13 C 1.53038 * 109.28065 * 57.65412 * 12 11 9 14 14 N 1.46847 * 109.52390 * 300.82302 * 13 12 11 15 15 C 1.46896 * 111.00067 * 185.83855 * 14 13 12 16 16 C 1.50702 * 109.47004 * 66.03906 * 15 14 13 17 17 C 1.33644 * 122.74657 * 95.00137 * 16 15 14 18 18 S 1.76193 * 107.92455 * 179.97438 * 17 16 15 19 19 C 1.70975 * 90.28619 * 359.97438 * 18 17 16 20 20 C 1.50694 * 124.91980 * 179.97438 * 19 18 17 21 21 F 1.39902 * 109.47093 * 269.97870 * 20 19 18 22 22 F 1.39905 * 109.46960 * 29.97873 * 20 19 18 23 23 F 1.39903 * 109.47107 * 149.98034 * 20 19 18 24 24 N 1.29030 * 110.16105 * 359.73588 * 19 18 17 25 25 C 1.46839 * 111.19919 * 61.73605 * 14 13 12 26 26 H 0.97000 * 119.99868 * 174.67299 * 1 2 3 27 27 H 1.09003 * 109.52370 * 302.31106 * 11 9 7 28 28 H 1.09000 * 109.52359 * 62.44107 * 11 9 7 29 29 H 1.09003 * 109.50102 * 177.59643 * 12 11 9 30 30 H 1.09004 * 109.50613 * 297.67324 * 12 11 9 31 31 H 1.09006 * 109.45743 * 60.83707 * 13 12 11 32 32 H 1.09001 * 109.46078 * 180.80006 * 13 12 11 33 33 H 1.08996 * 109.47058 * 186.03911 * 15 14 13 34 34 H 1.08996 * 109.47380 * 306.04663 * 15 14 13 35 35 H 1.08006 * 126.04133 * 0.02562 * 17 16 15 36 36 H 1.09006 * 109.46328 * 178.24000 * 25 14 13 37 37 H 1.09009 * 109.46232 * 58.27605 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 1.5051 -2.1060 0.2916 9 6 3.4549 -1.2266 -0.4085 10 1 4.0187 -0.5151 0.1947 11 6 3.5781 -0.8529 -1.8883 12 6 5.0472 -0.9467 -2.3096 13 6 5.5605 -2.3632 -2.0408 14 7 5.4217 -2.6726 -0.6120 15 6 6.0309 -3.9705 -0.2928 16 6 7.5216 -3.8901 -0.4993 17 6 8.3755 -3.6224 0.4934 18 16 10.0047 -3.6241 -0.1776 19 6 9.3759 -3.9853 -1.7259 20 6 10.2034 -4.1668 -2.9722 21 9 10.3536 -2.9338 -3.6159 22 9 11.4627 -4.6689 -2.6267 23 9 9.5622 -5.0662 -3.8308 24 7 8.0906 -4.0848 -1.6718 25 6 4.0143 -2.6349 -0.1949 26 1 -0.4850 -0.8364 -0.0780 27 1 2.9823 -1.5406 -2.4886 28 1 3.2197 0.1656 -2.0378 29 1 5.1358 -0.7232 -3.3728 30 1 5.6366 -0.2307 -1.7369 31 1 4.9795 -3.0769 -2.6251 32 1 6.6103 -2.4294 -2.3266 33 1 5.8212 -4.2246 0.7461 34 1 5.6147 -4.7377 -0.9457 35 1 8.1133 -3.4385 1.5249 36 1 3.9411 -2.8986 0.8603 37 1 3.4406 -3.3474 -0.7877 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895314570.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:07 Heat of formation + Delta-G solvation = -100.865643 kcal Electronic energy + Delta-G solvation = -24837.243879 eV Core-core repulsion = 20712.442849 eV Total energy + Delta-G solvation = -4124.801030 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.087 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.54347 -48.11121 -47.98351 -40.50956 -38.20534 -34.14571 -32.49297 -31.25990 -30.18926 -27.91296 -26.85640 -24.63744 -23.63884 -22.27780 -21.14270 -20.35622 -19.25062 -18.93788 -18.75844 -18.34990 -17.51163 -17.31349 -15.84853 -15.20739 -15.01276 -14.86533 -14.45950 -14.42229 -14.30445 -14.16661 -14.14941 -14.06361 -13.87212 -13.44648 -13.21462 -12.88818 -12.70510 -12.30640 -12.17110 -11.71008 -11.54076 -11.20880 -10.66894 -10.52939 -10.28865 -10.10611 -9.93418 -9.87996 -9.63319 -9.38488 -9.22776 -8.71545 -8.24098 -7.93515 -6.43026 -4.05206 0.00377 0.64011 1.13805 2.01685 2.21755 3.07360 3.42421 3.46750 3.64921 3.71278 3.91146 4.17985 4.46986 4.53284 4.79126 4.90896 5.25336 5.32881 5.48369 5.56262 5.70193 5.73759 5.88246 6.05885 6.15279 6.30313 6.40733 6.50625 6.64473 6.84536 6.93723 7.12709 7.29852 7.42609 7.49983 7.62780 8.19800 8.38811 8.90583 9.62016 10.94874 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.024599 B = 0.003190 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.996912 B = 8776.590134 C = 9018.799373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.035 3.965 3 Si 1.041 2.959 4 H -0.288 1.288 5 H -0.273 1.273 6 H -0.284 1.284 7 C -0.600 4.600 8 H 0.054 0.946 9 C 0.028 3.972 10 H 0.029 0.971 11 C -0.125 4.125 12 C -0.119 4.119 13 C 0.063 3.937 14 N -0.537 5.537 15 C 0.125 3.875 16 C 0.080 3.920 17 C -0.207 4.207 18 S 0.212 5.788 19 C -0.087 4.087 20 C 0.556 3.444 21 F -0.162 7.162 22 F -0.167 7.167 23 F -0.156 7.156 24 N -0.405 5.405 25 C 0.078 3.922 26 H 0.267 0.733 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.029 0.971 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.052 0.948 35 H 0.193 0.807 36 H 0.066 0.934 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.266 -9.103 -1.679 25.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.170 4.170 3 Si 0.870 3.130 4 H -0.214 1.214 5 H -0.199 1.199 6 H -0.210 1.210 7 C -0.638 4.638 8 H 0.072 0.928 9 C 0.009 3.991 10 H 0.047 0.953 11 C -0.163 4.163 12 C -0.157 4.157 13 C -0.065 4.065 14 N -0.262 5.262 15 C -0.006 4.006 16 C -0.053 4.053 17 C -0.347 4.347 18 S 0.465 5.535 19 C -0.364 4.364 20 C 0.498 3.502 21 F -0.143 7.143 22 F -0.148 7.148 23 F -0.138 7.138 24 N -0.121 5.121 25 C -0.049 4.049 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.070 0.930 35 H 0.210 0.790 36 H 0.084 0.916 37 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 24.058 -7.083 -1.486 25.123 hybrid contribution -1.071 -2.413 -0.662 2.722 sum 22.986 -9.496 -2.148 24.963 Atomic orbital electron populations 1.70845 1.07207 1.30388 1.45647 1.25726 0.95996 1.02398 0.92910 0.84111 0.75403 0.76076 0.77396 1.21444 1.19924 1.20994 1.21950 0.94853 0.96494 1.50498 0.92765 1.18987 0.96479 0.91620 0.92024 0.95268 1.22126 0.92825 1.01657 0.99655 1.21673 0.98738 0.95736 0.99561 1.22048 1.00056 0.96998 0.87395 1.62082 1.18865 1.27077 1.18218 1.20632 0.85280 0.92620 1.02046 1.20288 0.98581 1.00853 0.85597 1.27352 0.93992 1.07282 1.06070 1.83948 1.08206 1.62179 0.99167 1.26610 0.95469 1.14780 0.99523 1.16924 0.76983 0.74808 0.81503 1.93277 1.95574 1.42853 1.82629 1.93242 1.41956 1.87545 1.92066 1.93266 1.81409 1.67700 1.71375 1.65841 1.07159 1.11634 1.27451 1.22150 0.83672 0.99965 0.99079 0.92295 0.93279 0.92065 0.92906 0.92134 0.95304 0.91504 0.88715 0.92983 0.78956 0.91586 0.95624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.71 13.70 55.43 0.76 -26.96 16 2 C 0.03 0.99 5.34 -17.82 -0.10 0.90 16 3 Si 1.04 25.16 26.42 -169.99 -4.49 20.67 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.27 -6.12 5.57 56.52 0.31 -5.81 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.60 -16.55 8.82 -34.44 -0.30 -16.86 16 8 H 0.05 1.60 7.99 -52.49 -0.42 1.18 16 9 C 0.03 0.66 1.84 -91.69 -0.17 0.49 16 10 H 0.03 0.70 6.79 -51.93 -0.35 0.35 16 11 C -0.12 -2.73 4.97 -26.61 -0.13 -2.87 16 12 C -0.12 -2.20 6.09 -26.65 -0.16 -2.36 16 13 C 0.06 1.09 5.28 -3.83 -0.02 1.07 16 14 N -0.54 -9.20 4.65 -236.12 -1.10 -10.29 16 15 C 0.12 1.72 5.41 -4.98 -0.03 1.69 16 16 C 0.08 1.01 5.57 -84.22 -0.47 0.54 16 17 C -0.21 -2.03 11.11 29.12 0.32 -1.71 16 18 S 0.21 1.85 22.85 -107.50 -2.46 -0.61 16 19 C -0.09 -1.00 6.75 -13.46 -0.09 -1.09 16 20 C 0.56 6.06 3.56 36.00 0.13 6.19 16 21 F -0.16 -1.84 17.30 2.25 0.04 -1.80 16 22 F -0.17 -1.58 17.00 2.25 0.04 -1.54 16 23 F -0.16 -1.87 17.22 2.25 0.04 -1.84 16 24 N -0.40 -5.48 9.07 -8.06 -0.07 -5.56 16 25 C 0.08 1.55 4.68 -3.84 -0.02 1.53 16 26 H 0.27 8.12 8.73 -40.82 -0.36 7.77 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.06 1.41 4.85 -51.93 -0.25 1.16 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 1.12 6.13 -51.93 -0.32 0.80 16 33 H 0.09 1.11 7.94 -51.93 -0.41 0.70 16 34 H 0.05 0.74 8.12 -51.93 -0.42 0.31 16 35 H 0.19 1.40 8.06 -52.48 -0.42 0.98 16 36 H 0.07 1.27 8.01 -51.93 -0.42 0.85 16 37 H 0.03 0.53 8.14 -51.92 -0.42 0.10 16 LS Contribution 324.73 15.07 4.89 4.89 Total: -1.00 -30.23 324.73 -7.75 -37.98 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -4.37 Total: -2.48 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -1.04 Total: -12.47 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: -0.41 Total: -42.81 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.12 Total: -5.18 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -4.49 Total: 20.67 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.46 Total: -0.61 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.23 -7.75 -37.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895314570.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.887 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds