Wall clock time and date at job start Tue Mar 31 2020 12:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00043 * 2 1 4 4 H 1.48494 * 109.47066 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47295 * 240.00016 * 3 2 1 6 6 H 1.48505 * 109.46714 * 119.99940 * 3 2 1 7 7 C 1.37882 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00061 * 341.77484 * 7 2 1 9 9 C 1.50702 * 119.99807 * 161.78346 * 7 2 1 10 10 H 1.08996 * 109.50400 * 54.51635 * 9 7 2 11 11 C 1.53119 * 109.50169 * 294.43486 * 9 7 2 12 12 C 1.53120 * 109.15793 * 182.40723 * 11 9 7 13 13 C 1.53038 * 109.28065 * 57.65412 * 12 11 9 14 14 N 1.46847 * 109.52390 * 300.82302 * 13 12 11 15 15 C 1.46896 * 111.00067 * 185.83855 * 14 13 12 16 16 C 1.50702 * 109.47004 * 66.03906 * 15 14 13 17 17 C 1.33644 * 122.74657 * 95.00137 * 16 15 14 18 18 S 1.76193 * 107.92455 * 179.97438 * 17 16 15 19 19 C 1.70975 * 90.28619 * 359.97438 * 18 17 16 20 20 C 1.50694 * 124.91980 * 179.97438 * 19 18 17 21 21 F 1.39902 * 109.47093 * 269.97870 * 20 19 18 22 22 F 1.39905 * 109.46960 * 29.97873 * 20 19 18 23 23 F 1.39903 * 109.47107 * 149.98034 * 20 19 18 24 24 N 1.29030 * 110.16105 * 359.73588 * 19 18 17 25 25 C 1.46839 * 111.19919 * 61.73605 * 14 13 12 26 26 H 0.97000 * 119.99868 * 174.67299 * 1 2 3 27 27 H 1.09003 * 109.52370 * 302.31106 * 11 9 7 28 28 H 1.09000 * 109.52359 * 62.44107 * 11 9 7 29 29 H 1.09003 * 109.50102 * 177.59643 * 12 11 9 30 30 H 1.09004 * 109.50613 * 297.67324 * 12 11 9 31 31 H 1.09006 * 109.45743 * 60.83707 * 13 12 11 32 32 H 1.09001 * 109.46078 * 180.80006 * 13 12 11 33 33 H 1.08996 * 109.47058 * 186.03911 * 15 14 13 34 34 H 1.08996 * 109.47380 * 306.04663 * 15 14 13 35 35 H 1.08006 * 126.04133 * 0.02562 * 17 16 15 36 36 H 1.09006 * 109.46328 * 178.24000 * 25 14 13 37 37 H 1.09009 * 109.46232 * 58.27605 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 1.5051 -2.1060 0.2916 9 6 3.4549 -1.2266 -0.4085 10 1 4.0187 -0.5151 0.1947 11 6 3.5781 -0.8529 -1.8883 12 6 5.0472 -0.9467 -2.3096 13 6 5.5605 -2.3632 -2.0408 14 7 5.4217 -2.6726 -0.6120 15 6 6.0309 -3.9705 -0.2928 16 6 7.5216 -3.8901 -0.4993 17 6 8.3755 -3.6224 0.4934 18 16 10.0047 -3.6241 -0.1776 19 6 9.3759 -3.9853 -1.7259 20 6 10.2034 -4.1668 -2.9722 21 9 10.3536 -2.9338 -3.6159 22 9 11.4627 -4.6689 -2.6267 23 9 9.5622 -5.0662 -3.8308 24 7 8.0906 -4.0848 -1.6718 25 6 4.0143 -2.6349 -0.1949 26 1 -0.4850 -0.8364 -0.0780 27 1 2.9823 -1.5406 -2.4886 28 1 3.2197 0.1656 -2.0378 29 1 5.1358 -0.7232 -3.3728 30 1 5.6366 -0.2307 -1.7369 31 1 4.9795 -3.0769 -2.6251 32 1 6.6103 -2.4294 -2.3266 33 1 5.8212 -4.2246 0.7461 34 1 5.6147 -4.7377 -0.9457 35 1 8.1133 -3.4385 1.5249 36 1 3.9411 -2.8986 0.8603 37 1 3.4406 -3.3474 -0.7877 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895314570.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:07 Heat of formation + Delta-G solvation = -120.407703 kcal Electronic energy + Delta-G solvation = -24838.091287 eV Core-core repulsion = 20712.442849 eV Total energy + Delta-G solvation = -4125.648438 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.087 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.36809 -48.91169 -48.84521 -41.41948 -39.66352 -35.78766 -34.20207 -32.38141 -31.93724 -28.76704 -28.00258 -26.52291 -24.73685 -23.62937 -22.70665 -21.28632 -20.45966 -20.13106 -19.76840 -19.58252 -19.15761 -18.18031 -17.12729 -16.42420 -15.94441 -15.78326 -15.74693 -15.60921 -15.28909 -15.24447 -15.14999 -15.03379 -15.00078 -14.99084 -14.49287 -14.41033 -13.88791 -13.82020 -13.72620 -13.16498 -12.77178 -12.61712 -12.37417 -12.24673 -11.79793 -11.70117 -11.39887 -11.16819 -10.98396 -10.71280 -10.69141 -10.40924 -10.17572 -9.32085 -8.70747 -6.33206 -0.77586 -0.10325 0.37081 1.20807 1.32587 1.49163 1.55047 1.75271 2.25685 2.52683 2.88204 3.02816 3.07466 3.11900 3.41590 3.88293 4.03510 4.10106 4.16949 4.27055 4.40572 4.49327 4.57870 4.64066 4.78186 4.79858 4.81226 4.95523 5.02802 5.18439 5.23770 5.49829 5.73628 5.86644 6.06451 6.12394 6.24866 6.34975 6.61444 7.42607 8.66086 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.024599 B = 0.003190 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.996912 B = 8776.590134 C = 9018.799373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.016 4.016 3 Si 1.080 2.920 4 H -0.294 1.294 5 H -0.244 1.244 6 H -0.263 1.263 7 C -0.601 4.601 8 H 0.018 0.982 9 C 0.026 3.974 10 H 0.032 0.968 11 C -0.122 4.122 12 C -0.113 4.113 13 C 0.068 3.932 14 N -0.535 5.535 15 C 0.127 3.873 16 C 0.053 3.947 17 C -0.196 4.196 18 S 0.289 5.711 19 C -0.114 4.114 20 C 0.558 3.442 21 F -0.166 7.166 22 F -0.158 7.158 23 F -0.167 7.167 24 N -0.437 5.437 25 C 0.089 3.911 26 H 0.252 0.748 27 H 0.032 0.968 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.018 0.982 32 H 0.079 0.921 33 H 0.116 0.884 34 H 0.043 0.957 35 H 0.221 0.779 36 H 0.071 0.929 37 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.719 -8.560 -0.973 28.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.214 4.214 3 Si 0.901 3.099 4 H -0.220 1.220 5 H -0.169 1.169 6 H -0.188 1.188 7 C -0.639 4.639 8 H 0.037 0.963 9 C 0.006 3.994 10 H 0.050 0.950 11 C -0.160 4.160 12 C -0.150 4.150 13 C -0.060 4.060 14 N -0.260 5.260 15 C -0.003 4.003 16 C -0.080 4.080 17 C -0.337 4.337 18 S 0.543 5.457 19 C -0.390 4.390 20 C 0.500 3.500 21 F -0.147 7.147 22 F -0.139 7.139 23 F -0.148 7.148 24 N -0.154 5.154 25 C -0.038 4.038 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.036 0.964 32 H 0.097 0.903 33 H 0.134 0.866 34 H 0.061 0.939 35 H 0.237 0.763 36 H 0.089 0.911 37 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 27.551 -6.575 -0.793 28.336 hybrid contribution -2.084 -2.698 -0.822 3.507 sum 25.467 -9.274 -1.615 27.151 Atomic orbital electron populations 1.70970 1.08515 1.29510 1.48750 1.27123 0.95931 1.06201 0.92163 0.83644 0.74898 0.71860 0.79449 1.22013 1.16897 1.18815 1.22208 0.97266 0.94999 1.49435 0.96343 1.18934 0.93660 0.93886 0.92875 0.95034 1.21989 0.95308 1.00379 0.98283 1.21622 0.95879 0.96643 1.00901 1.21989 1.00429 0.96034 0.87524 1.62015 1.16553 1.29502 1.17920 1.20653 0.86279 0.90396 1.03019 1.20057 0.97996 1.03542 0.86383 1.27743 0.94569 1.04527 1.06818 1.83722 1.06185 1.59661 0.96151 1.26703 0.95386 1.15836 1.01035 1.16918 0.77221 0.74494 0.81380 1.93265 1.95620 1.43092 1.82773 1.93255 1.41335 1.87411 1.91947 1.93242 1.81692 1.68058 1.71797 1.65759 1.08331 1.12768 1.28505 1.21847 0.85431 0.97337 0.99229 0.93927 0.94954 0.93151 0.90942 0.91429 0.96361 0.90316 0.86637 0.93921 0.76279 0.91064 0.97304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.36 13.70 21.45 0.29 -59.06 16 2 C -0.02 -0.94 5.34 84.66 0.45 -0.49 16 3 Si 1.08 50.03 26.42 68.60 1.81 51.85 16 4 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 5 H -0.24 -10.15 5.57 99.48 0.55 -9.60 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.60 -33.93 8.82 25.60 0.23 -33.71 16 8 H 0.02 1.13 7.99 -2.91 -0.02 1.11 16 9 C 0.03 1.19 1.84 -11.49 -0.02 1.17 16 10 H 0.03 1.46 6.79 -2.39 -0.02 1.44 16 11 C -0.12 -5.23 4.97 30.67 0.15 -5.08 16 12 C -0.11 -3.90 6.09 30.65 0.19 -3.72 16 13 C 0.07 2.26 5.28 86.33 0.46 2.71 16 14 N -0.54 -17.36 4.65 -900.94 -4.19 -21.54 16 15 C 0.13 3.24 5.41 85.56 0.46 3.71 16 16 C 0.05 1.21 5.57 41.52 0.23 1.44 16 17 C -0.20 -3.09 11.11 66.78 0.74 -2.35 16 18 S 0.29 3.97 22.85 -56.49 -1.29 2.68 16 19 C -0.11 -2.37 6.75 88.52 0.60 -1.77 16 20 C 0.56 11.25 3.56 71.23 0.25 11.50 16 21 F -0.17 -3.51 17.30 44.97 0.78 -2.73 16 22 F -0.16 -2.67 17.00 44.97 0.76 -1.91 16 23 F -0.17 -3.86 17.22 44.97 0.77 -3.09 16 24 N -0.44 -11.00 9.07 -179.41 -1.63 -12.63 16 25 C 0.09 3.49 4.68 86.33 0.40 3.90 16 26 H 0.25 16.10 8.73 -92.71 -0.81 15.29 16 27 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.05 2.24 4.85 -2.39 -0.01 2.23 16 29 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.08 2.48 6.13 -2.39 -0.01 2.46 16 33 H 0.12 2.41 7.94 -2.39 -0.02 2.40 16 34 H 0.04 1.17 8.12 -2.39 -0.02 1.15 16 35 H 0.22 2.13 8.06 -2.91 -0.02 2.10 16 36 H 0.07 2.69 8.01 -2.38 -0.02 2.67 16 37 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 Total: -1.00 -67.07 324.73 2.38 -64.69 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: 0.92 Total: 4.43 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: 4.14 Total: -22.69 kcal Atomic # 7 Polarization: -87.72 SS G_CDS: -5.52 Total: -93.24 kcal Atomic # 9 Polarization: -10.04 SS G_CDS: 2.32 Total: -7.72 kcal Atomic # 14 Polarization: 50.03 SS G_CDS: 1.81 Total: 51.85 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -1.29 Total: 2.68 kcal Total: -67.07 2.38 -64.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895314570.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.719 kcal (2) G-P(sol) polarization free energy of solvation -67.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds