Wall clock time and date at job start Tue Mar 31 2020 12:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99991 * 2 1 4 4 H 1.48501 * 109.47112 * 269.99997 * 3 2 1 5 5 H 1.48497 * 109.47020 * 29.99867 * 3 2 1 6 6 H 1.48502 * 109.47120 * 150.00079 * 3 2 1 7 7 C 1.38813 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99690 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00237 * 180.02562 * 7 2 1 10 10 C 1.46509 * 119.99922 * 179.97438 * 9 7 2 11 11 C 1.53041 * 109.45503 * 155.00014 * 10 9 7 12 12 C 1.53194 * 109.30843 * 181.37381 * 11 10 9 13 13 N 1.46928 * 108.77415 * 305.36256 * 12 11 10 14 14 C 1.34774 * 120.63247 * 233.58888 * 13 12 11 15 15 O 1.21737 * 120.00209 * 6.45166 * 14 13 12 16 16 C 1.46431 * 120.00359 * 186.45784 * 14 13 12 17 17 C 1.35872 * 124.99643 * 211.68043 * 16 14 13 18 18 C 1.38721 * 115.21229 * 180.26006 * 17 16 14 19 19 O 1.36646 * 139.75004 * 179.97438 * 18 17 16 20 20 C 1.34076 * 109.73840 * 180.02562 * 19 18 17 21 21 C 1.34217 * 109.49169 * 0.02562 * 20 19 18 22 22 C 1.38040 * 113.37973 * 0.02562 * 18 17 16 23 23 S 1.75652 * 124.99432 * 31.98125 * 16 14 13 24 24 C 1.46929 * 118.74017 * 53.86028 * 13 12 11 25 25 C 1.53039 * 109.44806 * 275.05938 * 10 9 7 26 26 H 0.96994 * 119.99993 * 359.97438 * 1 2 3 27 27 H 0.96995 * 120.00472 * 359.97438 * 9 7 2 28 28 H 1.08991 * 109.45953 * 35.02872 * 10 9 7 29 29 H 1.09000 * 109.50158 * 61.42283 * 11 10 9 30 30 H 1.09000 * 109.52768 * 301.33582 * 11 10 9 31 31 H 1.09002 * 109.58637 * 185.57766 * 12 11 10 32 32 H 1.08998 * 109.70474 * 65.21948 * 12 11 10 33 33 H 1.08006 * 122.39891 * 0.24398 * 17 16 14 34 34 H 1.07997 * 125.25522 * 179.97438 * 20 19 18 35 35 H 1.07996 * 126.51072 * 180.02562 * 21 20 19 36 36 H 1.09003 * 109.58393 * 65.92314 * 24 13 12 37 37 H 1.08995 * 109.58837 * 186.35014 * 24 13 12 38 38 H 1.09002 * 109.49738 * 298.57640 * 25 10 9 39 39 H 1.09004 * 109.49631 * 58.67096 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4709 0.0000 11 6 5.4999 -2.2583 -0.6093 12 6 6.2500 -3.5937 -0.6391 13 7 6.2666 -4.1572 0.7177 14 6 7.4285 -4.5186 1.2971 15 8 8.4858 -4.2724 0.7463 16 6 7.4193 -5.2077 2.5891 17 6 8.3839 -5.0950 3.5393 18 6 8.1727 -5.8442 4.6875 19 8 8.7703 -6.1023 5.8890 20 6 8.0193 -6.9615 6.5929 21 6 6.9267 -7.2859 5.8842 22 6 7.0045 -6.5788 4.6552 23 16 6.1631 -6.3072 3.1354 24 6 4.9917 -4.3248 1.4287 25 6 4.2562 -2.9761 1.4374 26 1 -0.4850 0.8400 0.0004 27 1 3.8647 -0.3621 0.0004 28 1 3.5652 -3.2060 -0.5902 29 1 6.0566 -1.5417 -0.0053 30 1 5.3973 -1.8760 -1.6249 31 1 7.2726 -3.4309 -0.9796 32 1 5.7453 -4.2837 -1.3152 33 1 9.2532 -4.4673 3.4098 34 1 8.2574 -7.3355 7.5777 35 1 6.1378 -7.9568 6.1907 36 1 4.3842 -5.0721 0.9182 37 1 5.1837 -4.6445 2.4528 38 1 4.8245 -2.2528 2.0221 39 1 3.2678 -3.1050 1.8785 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997000303.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:38 Heat of formation + Delta-G solvation = 34.821133 kcal Electronic energy + Delta-G solvation = -24019.614498 eV Core-core repulsion = 20442.554028 eV Total energy + Delta-G solvation = -3577.060470 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.77764 -40.23401 -37.67487 -36.13459 -34.72244 -32.89336 -32.15780 -31.13003 -29.95804 -28.77118 -25.60334 -24.25040 -23.28159 -22.92108 -22.00767 -20.92639 -20.20177 -19.18001 -18.65534 -17.58033 -17.19664 -16.51644 -16.11406 -15.79720 -15.42774 -15.03681 -14.91171 -14.28825 -14.08033 -13.77744 -13.58527 -13.32481 -13.14896 -13.01948 -12.71888 -12.39159 -12.30880 -12.09021 -12.00002 -11.29845 -11.12276 -11.03151 -10.92318 -10.63829 -10.54673 -10.29821 -10.11145 -9.93912 -9.62991 -8.99354 -8.78374 -8.58467 -8.27501 -7.32731 -5.81643 -3.17749 0.06516 0.91300 1.50772 1.82609 2.06526 2.26993 2.82950 3.03148 3.35140 3.38490 3.43309 4.23199 4.28333 4.54641 4.55455 4.81779 4.91604 5.02760 5.15336 5.20107 5.23979 5.31625 5.41726 5.45268 5.50192 5.57740 5.62245 5.77676 5.84176 5.87051 6.02609 6.09871 6.20479 6.31288 6.44928 6.54209 6.72459 6.87502 7.25679 7.93503 7.95339 8.37412 9.15405 9.88234 10.07784 11.36485 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.019310 B = 0.003111 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.704173 B = 8996.825143 C = 9598.489956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.748 5.748 10 C 0.183 3.817 11 C -0.143 4.143 12 C 0.118 3.882 13 N -0.599 5.599 14 C 0.592 3.408 15 O -0.531 6.531 16 C -0.227 4.227 17 C -0.029 4.029 18 C 0.001 3.999 19 O -0.165 6.165 20 C 0.013 3.987 21 C -0.178 4.178 22 C -0.236 4.236 23 S 0.229 5.771 24 C 0.091 3.909 25 C -0.147 4.147 26 H 0.260 0.740 27 H 0.361 0.639 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.158 0.842 34 H 0.215 0.785 35 H 0.159 0.841 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.799 -16.220 10.214 24.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.389 5.389 10 C 0.073 3.927 11 C -0.182 4.182 12 C -0.004 4.004 13 N -0.331 5.331 14 C 0.378 3.622 15 O -0.409 6.409 16 C -0.347 4.347 17 C -0.063 4.063 18 C -0.054 4.054 19 O -0.064 6.064 20 C -0.057 4.057 21 C -0.200 4.200 22 C -0.353 4.353 23 S 0.495 5.505 24 C -0.034 4.034 25 C -0.188 4.188 26 H 0.070 0.930 27 H 0.194 0.806 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.175 0.825 34 H 0.231 0.769 35 H 0.177 0.823 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 14.984 -16.535 9.303 24.176 hybrid contribution 1.560 1.621 0.980 2.454 sum 16.544 -14.913 10.283 24.533 Atomic orbital electron populations 1.69696 1.05114 1.25896 1.57337 1.24673 0.95216 0.97232 1.01902 0.86564 0.79213 0.85002 0.77815 1.21050 1.21758 1.20346 1.19060 0.80498 0.94700 1.43252 0.89126 1.42797 1.04036 1.01943 1.90164 1.20153 0.90253 0.89513 0.92751 1.22257 0.97172 0.96376 1.02417 1.21679 1.02377 0.94902 0.81409 1.48025 1.06217 1.61728 1.17150 1.16779 0.84071 0.78487 0.82843 1.90837 1.30324 1.55991 1.63783 1.23916 1.01190 1.09020 1.00544 1.18953 1.00053 0.99086 0.88225 1.19229 0.93682 1.03662 0.88861 1.84345 1.44874 1.53095 1.24134 1.24132 0.90935 0.92762 0.97836 1.20989 1.01484 1.05238 0.92324 1.24494 1.01509 1.06367 1.02968 1.84213 1.19079 1.40962 1.06241 1.22419 0.84082 0.99954 0.96915 1.22700 1.00510 0.94108 1.01486 0.93017 0.80595 0.92324 0.91754 0.90178 0.88942 0.90867 0.82462 0.76886 0.82329 0.90521 0.89760 0.92070 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.70 13.97 55.49 0.78 -27.92 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 21.77 27.74 -169.99 -4.71 17.06 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 7 C -0.25 -6.63 10.41 -15.06 -0.16 -6.79 16 8 H 0.09 2.61 8.06 -52.48 -0.42 2.18 16 9 N -0.75 -16.85 4.92 -53.38 -0.26 -17.11 16 10 C 0.18 3.24 2.73 -67.88 -0.19 3.05 16 11 C -0.14 -2.13 5.55 -26.61 -0.15 -2.28 16 12 C 0.12 1.55 6.44 -3.71 -0.02 1.53 16 13 N -0.60 -8.11 2.97 -174.13 -0.52 -8.62 16 14 C 0.59 8.58 7.56 -12.96 -0.10 8.48 16 15 O -0.53 -9.07 16.40 5.16 0.08 -8.99 16 16 C -0.23 -2.88 5.65 -37.13 -0.21 -3.09 16 17 C -0.03 -0.35 10.00 -40.25 -0.40 -0.76 16 18 C 0.00 0.02 7.79 -39.48 -0.31 -0.29 16 19 O -0.17 -1.73 10.72 -0.75 -0.01 -1.73 16 20 C 0.01 0.09 12.00 29.31 0.35 0.45 16 21 C -0.18 -1.46 10.91 -39.55 -0.43 -1.89 16 22 C -0.24 -2.56 7.35 -38.21 -0.28 -2.84 16 23 S 0.23 2.41 19.54 -107.50 -2.10 0.31 16 24 C 0.09 1.15 5.53 -3.49 -0.02 1.14 16 25 C -0.15 -2.34 5.67 -26.39 -0.15 -2.49 16 26 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.36 8.15 5.66 -40.82 -0.23 7.92 16 28 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.09 1.23 7.00 -51.93 -0.36 0.87 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.16 1.77 8.06 -52.48 -0.42 1.35 16 34 H 0.21 0.49 8.06 -52.49 -0.42 0.07 16 35 H 0.16 0.90 8.06 -52.49 -0.42 0.47 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.99 4.04 -26.74 -0.11 0.89 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 334.23 15.07 5.04 5.04 Total: -1.00 -33.39 334.23 -8.38 -41.77 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -4.52 Total: 5.91 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -2.16 Total: -5.70 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 0.00 Total: -53.66 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.06 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -2.10 Total: 0.31 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.39 -8.38 -41.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997000303.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.595 kcal (2) G-P(sol) polarization free energy of solvation -33.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds