Wall clock time and date at job start Tue Mar 31 2020 12:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99991 * 2 1 4 4 H 1.48501 * 109.47112 * 269.99997 * 3 2 1 5 5 H 1.48497 * 109.47020 * 29.99867 * 3 2 1 6 6 H 1.48502 * 109.47120 * 150.00079 * 3 2 1 7 7 C 1.38813 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99690 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00237 * 180.02562 * 7 2 1 10 10 C 1.46509 * 119.99922 * 179.97438 * 9 7 2 11 11 C 1.53041 * 109.45503 * 155.00014 * 10 9 7 12 12 C 1.53194 * 109.30843 * 181.37381 * 11 10 9 13 13 N 1.46928 * 108.77415 * 305.36256 * 12 11 10 14 14 C 1.34774 * 120.63247 * 233.58888 * 13 12 11 15 15 O 1.21737 * 120.00209 * 6.45166 * 14 13 12 16 16 C 1.46431 * 120.00359 * 186.45784 * 14 13 12 17 17 C 1.35872 * 124.99643 * 211.68043 * 16 14 13 18 18 C 1.38721 * 115.21229 * 180.26006 * 17 16 14 19 19 O 1.36646 * 139.75004 * 179.97438 * 18 17 16 20 20 C 1.34076 * 109.73840 * 180.02562 * 19 18 17 21 21 C 1.34217 * 109.49169 * 0.02562 * 20 19 18 22 22 C 1.38040 * 113.37973 * 0.02562 * 18 17 16 23 23 S 1.75652 * 124.99432 * 31.98125 * 16 14 13 24 24 C 1.46929 * 118.74017 * 53.86028 * 13 12 11 25 25 C 1.53039 * 109.44806 * 275.05938 * 10 9 7 26 26 H 0.96994 * 119.99993 * 359.97438 * 1 2 3 27 27 H 0.96995 * 120.00472 * 359.97438 * 9 7 2 28 28 H 1.08991 * 109.45953 * 35.02872 * 10 9 7 29 29 H 1.09000 * 109.50158 * 61.42283 * 11 10 9 30 30 H 1.09000 * 109.52768 * 301.33582 * 11 10 9 31 31 H 1.09002 * 109.58637 * 185.57766 * 12 11 10 32 32 H 1.08998 * 109.70474 * 65.21948 * 12 11 10 33 33 H 1.08006 * 122.39891 * 0.24398 * 17 16 14 34 34 H 1.07997 * 125.25522 * 179.97438 * 20 19 18 35 35 H 1.07996 * 126.51072 * 180.02562 * 21 20 19 36 36 H 1.09003 * 109.58393 * 65.92314 * 24 13 12 37 37 H 1.08995 * 109.58837 * 186.35014 * 24 13 12 38 38 H 1.09002 * 109.49738 * 298.57640 * 25 10 9 39 39 H 1.09004 * 109.49631 * 58.67096 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4709 0.0000 11 6 5.4999 -2.2583 -0.6093 12 6 6.2500 -3.5937 -0.6391 13 7 6.2666 -4.1572 0.7177 14 6 7.4285 -4.5186 1.2971 15 8 8.4858 -4.2724 0.7463 16 6 7.4193 -5.2077 2.5891 17 6 8.3839 -5.0950 3.5393 18 6 8.1727 -5.8442 4.6875 19 8 8.7703 -6.1023 5.8890 20 6 8.0193 -6.9615 6.5929 21 6 6.9267 -7.2859 5.8842 22 6 7.0045 -6.5788 4.6552 23 16 6.1631 -6.3072 3.1354 24 6 4.9917 -4.3248 1.4287 25 6 4.2562 -2.9761 1.4374 26 1 -0.4850 0.8400 0.0004 27 1 3.8647 -0.3621 0.0004 28 1 3.5652 -3.2060 -0.5902 29 1 6.0566 -1.5417 -0.0053 30 1 5.3973 -1.8760 -1.6249 31 1 7.2726 -3.4309 -0.9796 32 1 5.7453 -4.2837 -1.3152 33 1 9.2532 -4.4673 3.4098 34 1 8.2574 -7.3355 7.5777 35 1 6.1378 -7.9568 6.1907 36 1 4.3842 -5.0721 0.9182 37 1 5.1837 -4.6445 2.4528 38 1 4.8245 -2.2528 2.0221 39 1 3.2678 -3.1050 1.8785 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997000303.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:37 Heat of formation + Delta-G solvation = 12.829862 kcal Electronic energy + Delta-G solvation = -24020.568111 eV Core-core repulsion = 20442.554028 eV Total energy + Delta-G solvation = -3578.014083 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.49840 -41.36347 -38.95331 -37.03835 -36.31324 -34.02747 -33.54765 -32.35051 -31.58824 -29.67776 -26.90868 -25.42727 -24.50031 -24.07081 -23.20253 -21.91596 -21.39766 -20.18956 -19.78043 -19.27650 -18.18273 -17.28287 -17.18388 -16.74164 -16.64436 -16.39834 -15.96401 -15.86049 -15.31987 -15.03308 -14.83168 -14.66198 -14.30354 -14.12225 -13.74694 -13.65009 -13.49333 -13.22147 -13.06765 -12.94125 -12.69885 -12.27308 -12.18519 -12.14463 -11.91643 -11.76862 -11.36111 -11.32343 -11.25010 -10.93300 -9.87417 -9.48014 -9.28955 -9.03820 -8.00473 -5.33332 -0.79102 0.08184 0.65540 1.04630 1.34685 1.39283 1.40780 1.46976 1.47973 1.84714 2.01815 2.49498 3.28793 3.32282 3.52301 3.56917 3.79783 3.86915 3.98069 4.08867 4.14591 4.26788 4.34027 4.44189 4.53966 4.63739 4.64607 4.70630 4.73870 4.81045 4.83313 4.95806 5.02890 5.23129 5.30774 5.40896 5.52944 5.79979 5.84437 6.16010 6.23877 6.85622 7.09603 7.86176 8.04186 9.20855 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.019310 B = 0.003111 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.704173 B = 8996.825143 C = 9598.489956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.063 4.063 3 Si 0.950 3.050 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.257 1.257 7 C -0.223 4.223 8 H 0.064 0.936 9 N -0.752 5.752 10 C 0.176 3.824 11 C -0.132 4.132 12 C 0.122 3.878 13 N -0.599 5.599 14 C 0.593 3.407 15 O -0.564 6.564 16 C -0.257 4.257 17 C -0.027 4.027 18 C -0.031 4.031 19 O -0.179 6.179 20 C 0.036 3.964 21 C -0.195 4.195 22 C -0.238 4.238 23 S 0.254 5.746 24 C 0.099 3.901 25 C -0.139 4.139 26 H 0.256 0.744 27 H 0.363 0.637 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.156 0.844 34 H 0.264 0.736 35 H 0.186 0.814 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.052 0.948 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.321 -17.582 11.653 27.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.255 4.255 3 Si 0.778 3.222 4 H -0.206 1.206 5 H -0.226 1.226 6 H -0.181 1.181 7 C -0.354 4.354 8 H 0.082 0.918 9 N -0.395 5.395 10 C 0.068 3.932 11 C -0.171 4.171 12 C 0.000 4.000 13 N -0.330 5.330 14 C 0.381 3.619 15 O -0.445 6.445 16 C -0.377 4.377 17 C -0.062 4.062 18 C -0.086 4.086 19 O -0.078 6.078 20 C -0.033 4.033 21 C -0.218 4.218 22 C -0.356 4.356 23 S 0.521 5.479 24 C -0.025 4.025 25 C -0.180 4.180 26 H 0.065 0.935 27 H 0.196 0.804 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.174 0.826 34 H 0.279 0.721 35 H 0.203 0.797 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.070 0.930 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 16.550 -17.930 10.734 26.657 hybrid contribution 1.116 1.863 0.671 2.274 sum 17.667 -16.067 11.405 26.464 Atomic orbital electron populations 1.69865 1.06997 1.26487 1.60079 1.25424 0.95994 1.00947 1.03106 0.85489 0.78511 0.80262 0.77953 1.20581 1.22624 1.18149 1.19043 0.82424 0.93480 1.40429 0.91803 1.42851 1.02563 1.03886 1.90161 1.20412 0.91287 0.87485 0.94038 1.22129 0.95219 0.97427 1.02357 1.21692 1.02333 0.94310 0.81696 1.48065 1.06228 1.61453 1.17270 1.16983 0.83657 0.78057 0.83182 1.90809 1.31347 1.57494 1.64839 1.23737 1.02879 1.10783 1.00255 1.19037 0.99777 0.98803 0.88578 1.19245 0.94737 1.04980 0.89612 1.84356 1.45672 1.53927 1.23870 1.25184 0.89485 0.90074 0.98586 1.21442 1.02955 1.06005 0.91390 1.24908 1.01017 1.06024 1.03676 1.83940 1.17978 1.40041 1.05929 1.22391 0.83623 0.98368 0.98130 1.22495 1.00067 0.95751 0.99654 0.93477 0.80419 0.92502 0.92387 0.89475 0.88900 0.88793 0.82646 0.72075 0.79715 0.88547 0.88548 0.92958 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.00 13.97 21.65 0.30 -61.70 16 2 C -0.06 -3.65 5.50 84.86 0.47 -3.19 16 3 Si 0.95 45.15 27.74 68.60 1.90 47.05 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 6 H -0.26 -11.16 6.52 99.48 0.65 -10.51 16 7 C -0.22 -12.14 10.41 84.03 0.87 -11.27 16 8 H 0.06 3.77 8.06 -2.91 -0.02 3.74 16 9 N -0.75 -33.41 4.92 -322.80 -1.59 -35.00 16 10 C 0.18 6.05 2.73 45.02 0.12 6.18 16 11 C -0.13 -3.75 5.55 30.67 0.17 -3.58 16 12 C 0.12 2.99 6.44 86.36 0.56 3.54 16 13 N -0.60 -15.44 2.97 -823.02 -2.44 -17.88 16 14 C 0.59 16.88 7.56 86.38 0.65 17.53 16 15 O -0.56 -19.26 16.40 -4.47 -0.07 -19.33 16 16 C -0.26 -6.37 5.65 23.86 0.13 -6.24 16 17 C -0.03 -0.66 10.00 21.84 0.22 -0.44 16 18 C -0.03 -0.69 7.79 22.34 0.17 -0.52 16 19 O -0.18 -3.37 10.72 -25.61 -0.27 -3.64 16 20 C 0.04 0.38 12.00 66.90 0.80 1.18 16 21 C -0.20 -2.58 10.91 22.29 0.24 -2.34 16 22 C -0.24 -4.73 7.35 23.16 0.17 -4.56 16 23 S 0.25 4.97 19.54 -56.49 -1.10 3.87 16 24 C 0.10 2.37 5.53 86.51 0.48 2.85 16 25 C -0.14 -4.31 5.67 30.82 0.17 -4.13 16 26 H 0.26 15.50 8.31 -92.71 -0.77 14.72 16 27 H 0.36 15.85 5.66 -92.71 -0.52 15.32 16 28 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.09 2.35 7.00 -2.39 -0.02 2.33 16 32 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.16 3.61 8.06 -2.91 -0.02 3.58 16 34 H 0.26 -0.19 8.06 -2.91 -0.02 -0.22 16 35 H 0.19 1.36 8.06 -2.91 -0.02 1.34 16 36 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.10 2.13 4.04 -18.41 -0.07 2.06 16 38 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 Total: -1.00 -73.85 334.23 2.41 -71.44 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.45 Total: 20.17 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 5.24 Total: -4.98 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -3.73 Total: -114.58 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.35 Total: -22.97 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.90 Total: 47.05 kcal Atomic # 16 Polarization: 4.97 SS G_CDS: -1.10 Total: 3.87 kcal Total: -73.85 2.41 -71.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997000303.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.268 kcal (2) G-P(sol) polarization free energy of solvation -73.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds