Wall clock time and date at job start Tue Mar 31 2020 13:11:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.35957 * 117.00177 * 2 1
4 4 C 1.38430 * 119.99586 * 0.02562 * 3 2 1
5 5 C 1.39354 * 119.83505 * 180.02562 * 4 3 2
6 6 C 1.48273 * 120.07360 * 179.97438 * 5 4 3
7 7 C 1.39311 * 120.13401 * 129.72750 * 6 5 4
8 8 C 1.37967 * 119.96885 * 179.67685 * 7 6 5
9 9 C 1.38681 * 120.24563 * 0.61696 * 8 7 6
10 10 F 1.35103 * 119.86203 * 179.70183 * 9 8 7
11 11 C 1.38330 * 120.27030 * 359.68003 * 9 8 7
12 12 C 1.38710 * 120.02902 * 359.97438 * 11 9 8
13 13 O 1.35661 * 120.12163 * 180.02562 * 12 11 9
14 14 C 1.34816 * 117.00360 * 354.40149 * 13 12 11
15 15 H 1.08001 * 119.99691 * 5.05638 * 14 13 12
16 16 C 1.38646 * 120.00314 * 185.05958 * 14 13 12
17 17 N 1.31553 * 119.99946 * 359.97438 * 16 14 13
18 18 Si 1.86797 * 119.99846 * 179.97438 * 16 14 13
19 19 H 1.48501 * 109.47079 * 89.99702 * 18 16 14
20 20 H 1.48496 * 109.46922 * 209.99892 * 18 16 14
21 21 H 1.48500 * 109.47671 * 330.00030 * 18 16 14
22 22 C 1.39413 * 119.84350 * 359.74591 * 5 4 3
23 23 C 1.38018 * 119.99923 * 0.48468 * 22 5 4
24 24 C 1.50695 * 119.92373 * 179.78931 * 23 22 5
25 25 C 1.38438 * 120.15696 * 359.51625 * 23 22 5
26 26 F 1.35095 * 119.91816 * 180.27321 * 25 23 22
27 27 H 1.08998 * 109.47305 * 300.00169 * 1 2 3
28 28 H 1.09001 * 109.46944 * 60.00747 * 1 2 3
29 29 H 1.08999 * 109.47487 * 180.02562 * 1 2 3
30 30 H 1.08000 * 120.08202 * 0.02562 * 4 3 2
31 31 H 1.07996 * 120.01160 * 359.97292 * 7 6 5
32 32 H 1.08000 * 119.87573 * 180.32365 * 8 7 6
33 33 H 1.08004 * 119.98532 * 180.02562 * 11 9 8
34 34 H 0.96994 * 120.00126 * 180.02562 * 17 16 14
35 35 H 1.08002 * 120.00334 * 180.27308 * 22 5 4
36 36 H 1.08999 * 109.47458 * 269.72380 * 24 23 22
37 37 H 1.08999 * 109.47491 * 149.72622 * 24 23 22
38 38 H 1.09003 * 109.47155 * 29.72360 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0463 1.2114 0.0000
4 6 1.2923 2.3723 0.0005
5 6 1.9284 3.6122 0.0000
6 6 1.1260 4.8590 0.0000
7 6 1.3954 5.8641 0.9263
8 6 0.6510 7.0257 0.9189
9 6 -0.3744 7.1924 0.0003
10 9 -1.1024 8.3305 0.0039
11 6 -0.6546 6.1984 -0.9200
12 6 0.0913 5.0289 -0.9274
13 8 -0.1815 4.0530 -1.8294
14 6 -1.2628 4.2304 -2.6149
15 1 -1.8195 5.1547 -2.5666
16 6 -1.6602 3.2264 -3.4845
17 7 -0.9818 2.1008 -3.5436
18 14 -3.1588 3.4720 -4.5723
19 1 -2.7408 4.0809 -5.8606
20 1 -3.8030 2.1594 -4.8310
21 1 -4.1238 4.3712 -3.8900
22 6 3.3210 3.6774 0.0043
23 6 4.0663 2.5157 -0.0011
24 6 5.5715 2.5882 -0.0012
25 6 3.4343 1.2840 -0.0006
26 9 4.1685 0.1500 -0.0003
27 1 -0.3634 0.5138 0.8899
28 1 -0.3633 0.5137 -0.8901
29 1 -0.3634 -1.0276 0.0005
30 1 0.2137 2.3173 0.0014
31 1 2.1898 5.7360 1.6467
32 1 0.8646 7.8061 1.6343
33 1 -1.4540 6.3332 -1.6337
34 1 -1.2596 1.3985 -4.1522
35 1 3.8168 4.6369 0.0083
36 1 5.9344 2.6053 -1.0289
37 1 5.9773 1.7170 0.5129
38 1 5.8917 3.4949 0.5122
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001236189636.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:11:38
Heat of formation + Delta-G solvation = -111.581521 kcal
Electronic energy + Delta-G solvation = -26679.369481 eV
Core-core repulsion = 22509.827378 eV
Total energy + Delta-G solvation = -4169.542103 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 320.101 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-48.40549 -48.37526 -39.86373 -38.96291 -37.31710 -36.34177 -32.71942 -32.41799
-30.82978 -29.46513 -28.16920 -27.16099 -26.17542 -25.55706 -22.97457 -22.01147
-21.30920 -20.37704 -18.41650 -17.75135 -17.38052 -16.70180 -16.54183 -15.76443
-15.47532 -15.32382 -15.15543 -15.10376 -14.66366 -14.36227 -14.14354 -13.78784
-13.55464 -13.46429 -13.31956 -13.16993 -12.83292 -12.68780 -12.28501 -12.01451
-11.81101 -11.68275 -11.42369 -11.33612 -11.12213 -10.94560 -10.79617 -10.65474
-10.57973 -10.42863 -9.72699 -9.04812 -8.53051 -8.05794 -7.81143 -7.29883
-6.66641 -4.25903 1.25820 1.68907 1.98786 2.03927 3.01209 3.03022
3.07354 3.55314 3.78491 3.91606 4.25535 4.67399 4.73617 4.87095
4.96449 5.00665 5.10516 5.39175 5.44830 5.45820 5.55567 5.61877
5.66493 5.68760 5.72361 5.87682 6.00271 6.02672 6.11150 6.25024
6.34905 6.50597 6.52171 6.70309 6.73085 6.80903 6.83045 7.01760
7.05196 7.19570 7.50660 7.70778 7.76187 8.77513 9.40234 10.48610
Molecular weight = 320.10amu
Principal moments of inertia in cm(-1)
A = 0.009326 B = 0.005880 C = 0.003983
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3001.768247 B = 4760.568956 C = 7029.049187
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.314 6.314
3 C 0.105 3.895
4 C -0.146 4.146
5 C 0.023 3.977
6 C -0.146 4.146
7 C -0.030 4.030
8 C -0.249 4.249
9 C 0.147 3.853
10 F -0.150 7.150
11 C -0.270 4.270
12 C 0.186 3.814
13 O -0.152 6.152
14 C -0.399 4.399
15 H 0.094 0.906
16 C 0.047 3.953
17 N -0.848 5.848
18 Si 0.940 3.060
19 H -0.271 1.271
20 H -0.276 1.276
21 H -0.266 1.266
22 C -0.128 4.128
23 C -0.090 4.090
24 C -0.108 4.108
25 C 0.050 3.950
26 F -0.140 7.140
27 H 0.051 0.949
28 H 0.078 0.922
29 H 0.094 0.906
30 H 0.142 0.858
31 H 0.126 0.874
32 H 0.122 0.878
33 H 0.141 0.859
34 H 0.273 0.727
35 H 0.130 0.870
36 H 0.072 0.928
37 H 0.067 0.933
38 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.031 1.282 7.105 8.800
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.228 6.228
3 C 0.059 3.941
4 C -0.165 4.165
5 C 0.022 3.978
6 C -0.147 4.147
7 C -0.048 4.048
8 C -0.268 4.268
9 C 0.128 3.872
10 F -0.129 7.129
11 C -0.291 4.291
12 C 0.130 3.870
13 O -0.053 6.053
14 C -0.474 4.474
15 H 0.112 0.888
16 C -0.159 4.159
17 N -0.481 5.481
18 Si 0.764 3.236
19 H -0.197 1.197
20 H -0.201 1.201
21 H -0.190 1.190
22 C -0.147 4.147
23 C -0.091 4.091
24 C -0.164 4.164
25 C 0.030 3.970
26 F -0.119 7.119
27 H 0.069 0.931
28 H 0.097 0.903
29 H 0.113 0.887
30 H 0.160 0.840
31 H 0.144 0.856
32 H 0.140 0.860
33 H 0.159 0.841
34 H 0.083 0.917
35 H 0.148 0.852
36 H 0.091 0.909
37 H 0.086 0.914
38 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 5.198 0.605 6.893 8.654
hybrid contribution -1.226 0.371 -0.741 1.480
sum 3.971 0.976 6.152 7.387
Atomic orbital electron populations
1.23151 0.77605 1.03535 1.02777 1.86026 1.22068 1.25889 1.88806
1.18811 0.90421 0.85666 0.99203 1.21237 1.00813 0.90304 1.04152
1.18315 0.92055 0.91644 0.95755 1.17807 1.00636 0.95856 1.00444
1.20544 0.97252 0.91010 0.95983 1.20470 1.01268 1.00809 1.04276
1.17543 0.91171 0.81984 0.96539 1.91425 1.76517 1.48933 1.96022
1.20994 1.07553 0.95356 1.05151 1.18948 0.91596 0.88120 0.88348
1.84005 1.43035 1.37964 1.40326 1.21408 1.04182 1.03447 1.18376
0.88823 1.25285 0.98922 0.94422 0.97319 1.70021 1.37946 1.04925
1.35229 0.85717 0.79760 0.78351 0.79761 1.19689 1.20074 1.19044
1.20804 0.92472 0.97160 1.04228 1.19499 0.96593 0.90839 1.02130
1.20664 0.90252 1.02831 1.02681 1.16715 0.85818 0.82244 1.12221
1.91410 1.76735 1.49105 1.94630 0.93070 0.90305 0.88745 0.84024
0.85563 0.86019 0.84101 0.91682 0.85231 0.90916 0.91433 0.91056
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.39 9.81 101.05 0.99 1.38 16
2 O -0.31 -6.00 10.36 -19.60 -0.20 -6.20 16
3 C 0.11 2.05 6.69 -39.23 -0.26 1.79 16
4 C -0.15 -2.91 7.77 -39.10 -0.30 -3.22 16
5 C 0.02 0.43 5.28 -104.92 -0.55 -0.12 16
6 C -0.15 -2.82 5.49 -104.72 -0.57 -3.39 16
7 C -0.03 -0.48 9.50 -39.28 -0.37 -0.85 16
8 C -0.25 -4.08 10.01 -39.52 -0.40 -4.47 16
9 C 0.15 2.73 7.29 -39.38 -0.29 2.44 16
10 F -0.15 -2.70 17.26 2.25 0.04 -2.66 16
11 C -0.27 -5.61 9.14 -39.37 -0.36 -5.97 16
12 C 0.19 4.12 6.56 -38.75 -0.25 3.87 16
13 O -0.15 -3.87 8.10 0.36 0.00 -3.87 16
14 C -0.40 -10.16 9.49 30.88 0.29 -9.86 16
15 H 0.09 2.24 5.21 -52.49 -0.27 1.97 16
16 C 0.05 1.18 5.49 -17.52 -0.10 1.08 16
17 N -0.85 -22.49 13.67 55.48 0.76 -21.74 16
18 Si 0.94 19.15 29.55 -169.99 -5.02 14.13 16
19 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16
20 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16
21 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16
22 C -0.13 -2.10 9.15 -39.22 -0.36 -2.46 16
23 C -0.09 -1.44 5.88 -104.63 -0.62 -2.06 16
24 C -0.11 -1.31 9.83 36.00 0.35 -0.96 16
25 C 0.05 0.91 7.25 -39.23 -0.28 0.63 16
26 F -0.14 -2.55 16.30 2.25 0.04 -2.51 16
27 H 0.05 0.75 7.66 -51.93 -0.40 0.35 16
28 H 0.08 1.50 7.66 -51.93 -0.40 1.10 16
29 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16
30 H 0.14 2.96 5.92 -52.49 -0.31 2.65 16
31 H 0.13 1.66 8.04 -52.49 -0.42 1.24 16
32 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16
33 H 0.14 2.95 5.64 -52.48 -0.30 2.65 16
34 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16
35 H 0.13 1.80 8.04 -52.49 -0.42 1.38 16
36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
37 H 0.07 0.79 7.63 -51.93 -0.40 0.39 16
38 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16
LS Contribution 337.68 15.07 5.09 5.09
Total: -1.00 -27.98 337.68 -6.12 -34.10
By element:
Atomic # 1 Polarization: 9.58 SS G_CDS: -3.74 Total: 5.84 kcal
Atomic # 6 Polarization: -19.09 SS G_CDS: -3.08 Total: -22.17 kcal
Atomic # 7 Polarization: -22.49 SS G_CDS: 0.76 Total: -21.74 kcal
Atomic # 8 Polarization: -9.87 SS G_CDS: -0.20 Total: -10.07 kcal
Atomic # 9 Polarization: -5.25 SS G_CDS: 0.08 Total: -5.18 kcal
Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal
Total LS contribution 5.09 Total: 5.09 kcal
Total: -27.98 -6.12 -34.10 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001236189636.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -77.481 kcal
(2) G-P(sol) polarization free energy of solvation -27.982 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.463 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.118 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.100 kcal
(6) G-S(sol) free energy of system = (1) + (5) -111.582 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds