Wall clock time and date at job start Tue Mar 31 2020 13:11:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.35957 * 117.00177 * 2 1
4 4 C 1.38430 * 119.99586 * 0.02562 * 3 2 1
5 5 C 1.39354 * 119.83505 * 180.02562 * 4 3 2
6 6 C 1.48273 * 120.07360 * 179.97438 * 5 4 3
7 7 C 1.39311 * 120.13401 * 129.72750 * 6 5 4
8 8 C 1.37967 * 119.96885 * 179.67685 * 7 6 5
9 9 C 1.38681 * 120.24563 * 0.61696 * 8 7 6
10 10 F 1.35103 * 119.86203 * 179.70183 * 9 8 7
11 11 C 1.38330 * 120.27030 * 359.68003 * 9 8 7
12 12 C 1.38710 * 120.02902 * 359.97438 * 11 9 8
13 13 O 1.35661 * 120.12163 * 180.02562 * 12 11 9
14 14 C 1.34816 * 117.00360 * 354.40149 * 13 12 11
15 15 H 1.08001 * 119.99691 * 5.05638 * 14 13 12
16 16 C 1.38646 * 120.00314 * 185.05958 * 14 13 12
17 17 N 1.31553 * 119.99946 * 359.97438 * 16 14 13
18 18 Si 1.86797 * 119.99846 * 179.97438 * 16 14 13
19 19 H 1.48501 * 109.47079 * 89.99702 * 18 16 14
20 20 H 1.48496 * 109.46922 * 209.99892 * 18 16 14
21 21 H 1.48500 * 109.47671 * 330.00030 * 18 16 14
22 22 C 1.39413 * 119.84350 * 359.74591 * 5 4 3
23 23 C 1.38018 * 119.99923 * 0.48468 * 22 5 4
24 24 C 1.50695 * 119.92373 * 179.78931 * 23 22 5
25 25 C 1.38438 * 120.15696 * 359.51625 * 23 22 5
26 26 F 1.35095 * 119.91816 * 180.27321 * 25 23 22
27 27 H 1.08998 * 109.47305 * 300.00169 * 1 2 3
28 28 H 1.09001 * 109.46944 * 60.00747 * 1 2 3
29 29 H 1.08999 * 109.47487 * 180.02562 * 1 2 3
30 30 H 1.08000 * 120.08202 * 0.02562 * 4 3 2
31 31 H 1.07996 * 120.01160 * 359.97292 * 7 6 5
32 32 H 1.08000 * 119.87573 * 180.32365 * 8 7 6
33 33 H 1.08004 * 119.98532 * 180.02562 * 11 9 8
34 34 H 0.96994 * 120.00126 * 180.02562 * 17 16 14
35 35 H 1.08002 * 120.00334 * 180.27308 * 22 5 4
36 36 H 1.08999 * 109.47458 * 269.72380 * 24 23 22
37 37 H 1.08999 * 109.47491 * 149.72622 * 24 23 22
38 38 H 1.09003 * 109.47155 * 29.72360 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0463 1.2114 0.0000
4 6 1.2923 2.3723 0.0005
5 6 1.9284 3.6122 0.0000
6 6 1.1260 4.8590 0.0000
7 6 1.3954 5.8641 0.9263
8 6 0.6510 7.0257 0.9189
9 6 -0.3744 7.1924 0.0003
10 9 -1.1024 8.3305 0.0039
11 6 -0.6546 6.1984 -0.9200
12 6 0.0913 5.0289 -0.9274
13 8 -0.1815 4.0530 -1.8294
14 6 -1.2628 4.2304 -2.6149
15 1 -1.8195 5.1547 -2.5666
16 6 -1.6602 3.2264 -3.4845
17 7 -0.9818 2.1008 -3.5436
18 14 -3.1588 3.4720 -4.5723
19 1 -2.7408 4.0809 -5.8606
20 1 -3.8030 2.1594 -4.8310
21 1 -4.1238 4.3712 -3.8900
22 6 3.3210 3.6774 0.0043
23 6 4.0663 2.5157 -0.0011
24 6 5.5715 2.5882 -0.0012
25 6 3.4343 1.2840 -0.0006
26 9 4.1685 0.1500 -0.0003
27 1 -0.3634 0.5138 0.8899
28 1 -0.3633 0.5137 -0.8901
29 1 -0.3634 -1.0276 0.0005
30 1 0.2137 2.3173 0.0014
31 1 2.1898 5.7360 1.6467
32 1 0.8646 7.8061 1.6343
33 1 -1.4540 6.3332 -1.6337
34 1 -1.2596 1.3985 -4.1522
35 1 3.8168 4.6369 0.0083
36 1 5.9344 2.6053 -1.0289
37 1 5.9773 1.7170 0.5129
38 1 5.8917 3.4949 0.5122
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001236189636.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:11:38
Heat of formation + Delta-G solvation = -125.580206 kcal
Electronic energy + Delta-G solvation = -26679.976509 eV
Core-core repulsion = 22509.827378 eV
Total energy + Delta-G solvation = -4170.149132 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 320.101 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-49.87346 -49.79875 -41.34839 -40.50253 -38.77159 -37.87217 -34.37656 -33.91388
-32.23808 -30.98708 -29.63405 -28.49338 -27.45051 -27.33626 -24.43009 -23.55372
-22.73618 -21.78738 -20.10807 -19.30868 -18.89529 -18.10966 -17.96811 -17.21384
-17.08721 -16.84931 -16.63166 -16.58866 -16.07801 -15.98474 -15.52474 -15.45910
-15.12882 -14.95028 -14.72765 -14.27087 -14.16710 -14.02511 -13.79239 -13.44073
-13.14347 -13.03406 -12.91410 -12.77991 -12.50061 -12.43166 -12.26351 -12.15512
-12.09319 -11.80892 -11.46389 -10.84381 -9.96428 -9.51760 -9.29612 -8.81917
-8.50512 -6.18327 -0.20483 0.31266 0.48677 0.56258 1.33942 1.40240
1.48605 2.11916 2.18636 2.47389 2.73127 3.05826 3.22244 3.26652
3.44099 3.63161 3.76504 3.99349 4.10372 4.20163 4.22035 4.30230
4.34612 4.37420 4.43539 4.64644 4.67840 4.82740 4.85127 4.96048
5.01026 5.06074 5.17785 5.19238 5.27266 5.32787 5.38145 5.41944
5.64593 5.74172 5.94371 6.03049 6.26933 6.92713 7.65452 8.68203
Molecular weight = 320.10amu
Principal moments of inertia in cm(-1)
A = 0.009326 B = 0.005880 C = 0.003983
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3001.768247 B = 4760.568956 C = 7029.049187
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.328 6.328
3 C 0.085 3.915
4 C -0.163 4.163
5 C 0.007 3.993
6 C -0.148 4.148
7 C -0.016 4.016
8 C -0.219 4.219
9 C 0.139 3.861
10 F -0.146 7.146
11 C -0.286 4.286
12 C 0.159 3.841
13 O -0.193 6.193
14 C -0.420 4.420
15 H 0.097 0.903
16 C -0.004 4.004
17 N -0.896 5.896
18 Si 1.006 2.994
19 H -0.267 1.267
20 H -0.270 1.270
21 H -0.257 1.257
22 C -0.119 4.119
23 C -0.079 4.079
24 C -0.107 4.107
25 C 0.033 3.967
26 F -0.142 7.142
27 H 0.062 0.938
28 H 0.042 0.958
29 H 0.126 0.874
30 H 0.118 0.882
31 H 0.173 0.827
32 H 0.164 0.836
33 H 0.127 0.873
34 H 0.273 0.727
35 H 0.166 0.834
36 H 0.082 0.918
37 H 0.072 0.928
38 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.912 3.405 8.959 11.817
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.243 6.243
3 C 0.039 3.961
4 C -0.182 4.182
5 C 0.006 3.994
6 C -0.149 4.149
7 C -0.034 4.034
8 C -0.238 4.238
9 C 0.120 3.880
10 F -0.125 7.125
11 C -0.306 4.306
12 C 0.105 3.895
13 O -0.098 6.098
14 C -0.495 4.495
15 H 0.114 0.886
16 C -0.205 4.205
17 N -0.532 5.532
18 Si 0.827 3.173
19 H -0.192 1.192
20 H -0.195 1.195
21 H -0.181 1.181
22 C -0.137 4.137
23 C -0.080 4.080
24 C -0.163 4.163
25 C 0.013 3.987
26 F -0.121 7.121
27 H 0.081 0.919
28 H 0.061 0.939
29 H 0.144 0.856
30 H 0.136 0.864
31 H 0.190 0.810
32 H 0.182 0.818
33 H 0.145 0.855
34 H 0.082 0.918
35 H 0.183 0.817
36 H 0.100 0.900
37 H 0.091 0.909
38 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges 7.087 2.773 8.784 11.622
hybrid contribution -1.674 -0.111 -1.080 1.995
sum 5.414 2.662 7.704 9.785
Atomic orbital electron populations
1.23193 0.76580 1.05176 1.01532 1.85990 1.23157 1.26140 1.88963
1.19073 0.91297 0.85616 1.00103 1.21111 0.99838 0.91421 1.05843
1.18504 0.93437 0.90931 0.96501 1.18167 0.99686 0.96873 1.00176
1.21047 0.97679 0.89517 0.95142 1.20987 0.98641 1.01362 1.02830
1.17678 0.92020 0.81631 0.96693 1.91438 1.76594 1.48462 1.95990
1.21017 1.07540 0.96051 1.06000 1.19472 0.92876 0.88109 0.89010
1.84001 1.43868 1.39675 1.42212 1.21737 1.04912 1.03862 1.19021
0.88567 1.26311 1.01680 0.93983 0.98529 1.70156 1.40193 1.06006
1.36864 0.84748 0.76291 0.78478 0.77808 1.19200 1.19506 1.18123
1.21143 0.91172 0.98799 1.02579 1.19978 0.98854 0.89556 0.99606
1.20803 0.86936 1.04763 1.03799 1.17057 0.85478 0.83238 1.12903
1.91397 1.76543 1.49405 1.94716 0.91927 0.93937 0.85563 0.86417
0.80997 0.81831 0.85533 0.91826 0.81666 0.89986 0.90923 0.87850
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 1.03 9.81 113.37 1.11 2.14 16
2 O -0.33 -13.13 10.36 -93.07 -0.96 -14.09 16
3 C 0.09 3.44 6.69 22.50 0.15 3.59 16
4 C -0.16 -6.79 7.77 22.58 0.18 -6.62 16
5 C 0.01 0.25 5.28 -20.06 -0.11 0.14 16
6 C -0.15 -5.54 5.49 -19.93 -0.11 -5.65 16
7 C -0.02 -0.46 9.50 22.46 0.21 -0.24 16
8 C -0.22 -6.17 10.01 22.31 0.22 -5.95 16
9 C 0.14 4.88 7.29 22.40 0.16 5.05 16
10 F -0.15 -4.94 17.26 44.97 0.78 -4.17 16
11 C -0.29 -12.04 9.14 22.40 0.20 -11.83 16
12 C 0.16 7.20 6.56 22.81 0.15 7.35 16
13 O -0.19 -10.49 8.10 -21.62 -0.18 -10.66 16
14 C -0.42 -22.75 9.49 67.92 0.64 -22.10 16
15 H 0.10 4.92 5.21 -2.91 -0.02 4.90 16
16 C 0.00 -0.24 5.49 84.83 0.47 0.23 16
17 N -0.90 -50.82 13.67 21.61 0.30 -50.53 16
18 Si 1.01 40.97 29.55 68.60 2.03 42.99 16
19 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16
20 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16
21 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16
22 C -0.12 -3.57 9.15 22.50 0.21 -3.36 16
23 C -0.08 -2.35 5.88 -19.87 -0.12 -2.47 16
24 C -0.11 -2.19 9.83 71.23 0.70 -1.49 16
25 C 0.03 1.20 7.25 22.50 0.16 1.36 16
26 F -0.14 -5.11 16.30 44.97 0.73 -4.38 16
27 H 0.06 1.97 7.66 -2.39 -0.02 1.95 16
28 H 0.04 1.78 7.66 -2.39 -0.02 1.76 16
29 H 0.13 3.43 8.14 -2.39 -0.02 3.41 16
30 H 0.12 5.38 5.92 -2.91 -0.02 5.36 16
31 H 0.17 3.36 8.04 -2.91 -0.02 3.34 16
32 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16
33 H 0.13 5.57 5.64 -2.91 -0.02 5.56 16
34 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16
35 H 0.17 3.72 8.04 -2.91 -0.02 3.70 16
36 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16
37 H 0.07 1.45 7.63 -2.39 -0.02 1.43 16
38 H 0.10 1.49 8.08 -2.39 -0.02 1.47 16
Total: -1.00 -66.26 337.68 8.05 -58.21
By element:
Atomic # 1 Polarization: 21.36 SS G_CDS: 1.12 Total: 22.48 kcal
Atomic # 6 Polarization: -44.08 SS G_CDS: 4.24 Total: -39.84 kcal
Atomic # 7 Polarization: -50.82 SS G_CDS: 0.30 Total: -50.53 kcal
Atomic # 8 Polarization: -23.62 SS G_CDS: -1.14 Total: -24.76 kcal
Atomic # 9 Polarization: -10.06 SS G_CDS: 1.51 Total: -8.55 kcal
Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 42.99 kcal
Total: -66.26 8.05 -58.21 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001236189636.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -67.374 kcal
(2) G-P(sol) polarization free energy of solvation -66.257 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.631 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.051 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.206 kcal
(6) G-S(sol) free energy of system = (1) + (5) -125.580 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds