Wall clock time and date at job start Tue Mar 31 2020 12:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86797 * 120.00125 * 2 1 4 4 H 1.48505 * 109.46957 * 270.00321 * 3 2 1 5 5 H 1.48499 * 109.47209 * 30.00290 * 3 2 1 6 6 H 1.48500 * 109.47267 * 150.00181 * 3 2 1 7 7 C 1.38653 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00057 * 179.97438 * 7 2 1 9 9 O 1.34831 * 119.99651 * 0.02562 * 7 2 1 10 10 C 1.35761 * 116.99680 * 185.05731 * 9 7 2 11 11 C 1.38872 * 120.06840 * 354.45927 * 10 9 7 12 12 C 1.38100 * 119.93280 * 180.02562 * 11 10 9 13 13 C 1.38303 * 120.06667 * 0.02562 * 12 11 10 14 14 C 1.50695 * 119.93113 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47214 * 90.00013 * 14 13 12 16 16 C 1.38287 * 119.97388 * 270.02168 * 15 14 13 17 17 C 1.38248 * 120.11416 * 180.02562 * 16 15 14 18 18 C 1.38165 * 120.05283 * 359.67339 * 17 16 15 19 19 C 1.38716 * 119.94542 * 0.58142 * 18 17 16 20 20 O 1.35901 * 120.05539 * 179.71932 * 19 18 17 21 21 C 1.42901 * 117.00037 * 359.72291 * 20 19 18 22 22 F 1.39898 * 109.46805 * 60.00189 * 21 20 19 23 23 F 1.39897 * 109.46929 * 300.00196 * 21 20 19 24 24 C 1.38127 * 119.97497 * 90.00052 * 15 14 13 25 25 C 1.38308 * 120.13727 * 0.25062 * 13 12 11 26 26 C 1.38095 * 120.06609 * 359.45425 * 25 13 12 27 27 H 0.96996 * 119.99728 * 359.97438 * 1 2 3 28 28 H 1.08006 * 120.03480 * 0.02562 * 11 10 9 29 29 H 1.07999 * 119.96829 * 180.02562 * 12 11 10 30 30 H 1.09004 * 109.47575 * 329.99981 * 14 13 12 31 31 H 1.09002 * 109.47034 * 209.99990 * 14 13 12 32 32 H 1.08000 * 119.94207 * 359.97438 * 16 15 14 33 33 H 1.07999 * 119.97313 * 179.97438 * 17 16 15 34 34 H 1.07999 * 120.02739 * 180.29835 * 18 17 16 35 35 H 1.08999 * 109.46744 * 180.02562 * 21 20 19 36 36 H 1.08005 * 120.02670 * 359.97438 * 24 15 14 37 37 H 1.08001 * 119.96530 * 179.70394 * 25 13 12 38 38 H 1.08004 * 120.03258 * 180.26982 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4472 2.6526 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0016 10 6 2.0699 -3.5047 0.1046 11 6 3.4571 -3.4396 0.0921 12 6 4.2023 -4.5973 0.1997 13 6 3.5685 -5.8207 0.3193 14 6 4.3846 -7.0821 0.4360 15 6 4.6631 -7.3677 1.8892 16 6 5.7975 -6.8528 2.4895 17 6 6.0561 -7.1133 3.8223 18 6 5.1777 -7.8836 4.5598 19 6 4.0417 -8.4057 3.9588 20 8 3.1791 -9.1684 4.6806 21 6 3.5074 -9.3974 6.0524 22 9 3.5800 -8.1729 6.7252 23 9 4.7432 -10.0481 6.1338 24 6 3.7848 -8.1431 2.6208 25 6 2.1871 -5.8894 0.3263 26 6 1.4365 -4.7347 0.2252 27 1 -0.4849 0.8400 0.0004 28 1 3.9526 -2.4845 -0.0017 29 1 5.2811 -4.5473 0.1905 30 1 5.3273 -6.9556 -0.0965 31 1 3.8309 -7.9146 0.0018 32 1 6.4831 -6.2467 1.9158 33 1 6.9430 -6.7104 4.2887 34 1 5.3776 -8.0829 5.6023 35 1 2.7387 -10.0194 6.5110 36 1 2.8985 -8.5444 2.1518 37 1 1.6950 -6.8467 0.4151 38 1 0.3578 -4.7886 0.2351 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250268468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:26 Heat of formation + Delta-G solvation = -127.739231 kcal Electronic energy + Delta-G solvation = -25367.650591 eV Core-core repulsion = 21197.407837 eV Total energy + Delta-G solvation = -4170.242754 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.101 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.61993 -47.60983 -40.16466 -39.05908 -37.85723 -36.51041 -33.06462 -32.12548 -30.63927 -30.12382 -29.22055 -26.40057 -26.00274 -24.91700 -22.78959 -21.87431 -21.83677 -20.42023 -18.81622 -18.29424 -18.17745 -17.96667 -16.94657 -16.31474 -16.03937 -15.15031 -14.92373 -14.67565 -14.53929 -14.37619 -14.15939 -14.10907 -13.92190 -13.69123 -13.49833 -13.34537 -13.16500 -12.81024 -12.70430 -12.59481 -12.00675 -11.81191 -11.60187 -11.44894 -11.23409 -11.07361 -10.77386 -10.61742 -10.60726 -10.42806 -9.32780 -8.86674 -8.80027 -8.43843 -8.17741 -7.15705 -6.44830 -4.03579 1.25837 1.32530 2.22273 2.28769 2.37334 3.12591 3.13792 3.18554 3.19240 3.67022 3.96913 4.01144 4.35837 4.51620 4.70452 4.82464 5.01249 5.09295 5.16978 5.28675 5.30390 5.37688 5.47872 5.59033 5.75222 5.85158 5.91657 5.99525 6.12177 6.21682 6.34358 6.40530 6.46104 6.62740 6.71031 6.91408 7.02123 7.06918 7.24810 7.38019 7.44489 7.82810 8.00259 9.00870 9.71187 10.73272 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.017621 B = 0.002660 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.673210 B =10523.788123 C =10878.060488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.178 6.178 10 C 0.154 3.846 11 C -0.233 4.233 12 C -0.063 4.063 13 C -0.180 4.180 14 C -0.025 4.025 15 C -0.029 4.029 16 C -0.138 4.138 17 C -0.082 4.082 18 C -0.200 4.200 19 C 0.103 3.897 20 O -0.321 6.321 21 C 0.412 3.588 22 F -0.198 7.198 23 F -0.201 7.201 24 C -0.130 4.130 25 C -0.067 4.067 26 C -0.191 4.191 27 H 0.270 0.730 28 H 0.126 0.874 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.180 0.820 36 H 0.132 0.868 37 H 0.110 0.890 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.749 -18.317 8.801 22.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.082 6.082 10 C 0.100 3.900 11 C -0.252 4.252 12 C -0.082 4.082 13 C -0.181 4.181 14 C -0.062 4.062 15 C -0.030 4.030 16 C -0.156 4.156 17 C -0.100 4.100 18 C -0.219 4.219 19 C 0.060 3.940 20 O -0.239 6.239 21 C 0.321 3.679 22 F -0.180 7.180 23 F -0.183 7.183 24 C -0.148 4.148 25 C -0.085 4.085 26 C -0.211 4.211 27 H 0.080 0.920 28 H 0.144 0.856 29 H 0.124 0.876 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.196 0.804 36 H 0.150 0.850 37 H 0.128 0.872 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.169 -18.159 8.740 22.140 hybrid contribution 0.706 1.019 0.395 1.301 sum 9.875 -17.140 9.135 21.788 Atomic orbital electron populations 1.70041 1.05960 1.27657 1.46130 1.25289 0.95840 0.98830 0.96567 0.85718 0.78940 0.80109 0.78704 1.19874 1.20246 1.19192 1.21324 0.91790 0.80845 1.52831 0.89084 1.83981 1.34360 1.11458 1.78358 1.19395 0.90309 0.88056 0.92215 1.21142 0.93819 0.98859 1.11392 1.20573 0.98191 0.91736 0.97674 1.19040 0.93358 0.93418 1.12296 1.19385 0.99951 0.96233 0.90661 1.19798 0.92949 0.93748 0.96466 1.21046 0.98154 1.01309 0.95078 1.20902 0.98543 0.96563 0.93982 1.21422 0.96005 1.03548 1.00914 1.18814 0.89884 0.93574 0.91730 1.86605 1.48293 1.67356 1.21649 1.23330 0.84382 0.80147 0.80017 1.93108 1.96626 1.47701 1.80565 1.93088 1.48141 1.81290 1.95782 1.20279 1.01340 1.02415 0.90794 1.20476 0.92864 0.96723 0.98426 1.20197 0.99548 0.90334 1.10997 0.92026 0.85596 0.87629 0.90568 0.90657 0.85652 0.85642 0.85374 0.80382 0.84987 0.87192 0.86561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.45 13.67 55.48 0.76 -24.69 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.61 29.55 -169.99 -5.02 15.58 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 7 C -0.39 -11.01 9.49 30.89 0.29 -10.72 16 8 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 9 O -0.18 -5.13 9.76 0.01 0.00 -5.12 16 10 C 0.15 3.74 6.65 -39.11 -0.26 3.48 16 11 C -0.23 -5.06 9.17 -39.40 -0.36 -5.42 16 12 C -0.06 -1.15 9.69 -39.61 -0.38 -1.53 16 13 C -0.18 -3.00 5.12 -104.57 -0.54 -3.53 16 14 C -0.03 -0.32 5.47 -29.04 -0.16 -0.48 16 15 C -0.03 -0.39 5.11 -104.65 -0.54 -0.92 16 16 C -0.14 -1.72 9.70 -39.56 -0.38 -2.10 16 17 C -0.08 -0.98 10.04 -39.60 -0.40 -1.38 16 18 C -0.20 -2.53 8.26 -39.43 -0.33 -2.85 16 19 C 0.10 1.35 6.48 -39.22 -0.25 1.09 16 20 O -0.32 -3.64 10.43 -19.43 -0.20 -3.84 16 21 C 0.41 3.36 5.98 101.05 0.60 3.96 16 22 F -0.20 -2.05 15.56 2.25 0.04 -2.01 16 23 F -0.20 -1.87 15.60 2.25 0.04 -1.84 16 24 C -0.13 -1.72 9.64 -39.43 -0.38 -2.10 16 25 C -0.07 -1.18 9.69 -39.61 -0.38 -1.56 16 26 C -0.19 -4.07 9.99 -39.40 -0.39 -4.46 16 27 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.13 2.74 5.64 -52.48 -0.30 2.45 16 29 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.08 0.86 8.03 -51.93 -0.42 0.44 16 31 H 0.07 0.85 8.02 -51.93 -0.42 0.44 16 32 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.13 1.50 5.10 -52.49 -0.27 1.23 16 35 H 0.18 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 37 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 LS Contribution 338.66 15.07 5.10 5.10 Total: -1.00 -32.62 338.66 -7.01 -39.63 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -3.77 Total: 4.73 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -3.95 Total: -27.54 kcal Atomic # 7 Polarization: -25.45 SS G_CDS: 0.76 Total: -24.69 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.20 Total: -8.97 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.07 Total: -3.85 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.62 -7.01 -39.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250268468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.111 kcal (2) G-P(sol) polarization free energy of solvation -32.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds