Wall clock time and date at job start Tue Mar 31 2020 12:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86797 * 120.00125 * 2 1 4 4 H 1.48505 * 109.46957 * 270.00321 * 3 2 1 5 5 H 1.48499 * 109.47209 * 30.00290 * 3 2 1 6 6 H 1.48500 * 109.47267 * 150.00181 * 3 2 1 7 7 C 1.38653 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00057 * 179.97438 * 7 2 1 9 9 O 1.34831 * 119.99651 * 0.02562 * 7 2 1 10 10 C 1.35761 * 116.99680 * 185.05731 * 9 7 2 11 11 C 1.38872 * 120.06840 * 354.45927 * 10 9 7 12 12 C 1.38100 * 119.93280 * 180.02562 * 11 10 9 13 13 C 1.38303 * 120.06667 * 0.02562 * 12 11 10 14 14 C 1.50695 * 119.93113 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47214 * 90.00013 * 14 13 12 16 16 C 1.38287 * 119.97388 * 270.02168 * 15 14 13 17 17 C 1.38248 * 120.11416 * 180.02562 * 16 15 14 18 18 C 1.38165 * 120.05283 * 359.67339 * 17 16 15 19 19 C 1.38716 * 119.94542 * 0.58142 * 18 17 16 20 20 O 1.35901 * 120.05539 * 179.71932 * 19 18 17 21 21 C 1.42901 * 117.00037 * 359.72291 * 20 19 18 22 22 F 1.39898 * 109.46805 * 60.00189 * 21 20 19 23 23 F 1.39897 * 109.46929 * 300.00196 * 21 20 19 24 24 C 1.38127 * 119.97497 * 90.00052 * 15 14 13 25 25 C 1.38308 * 120.13727 * 0.25062 * 13 12 11 26 26 C 1.38095 * 120.06609 * 359.45425 * 25 13 12 27 27 H 0.96996 * 119.99728 * 359.97438 * 1 2 3 28 28 H 1.08006 * 120.03480 * 0.02562 * 11 10 9 29 29 H 1.07999 * 119.96829 * 180.02562 * 12 11 10 30 30 H 1.09004 * 109.47575 * 329.99981 * 14 13 12 31 31 H 1.09002 * 109.47034 * 209.99990 * 14 13 12 32 32 H 1.08000 * 119.94207 * 359.97438 * 16 15 14 33 33 H 1.07999 * 119.97313 * 179.97438 * 17 16 15 34 34 H 1.07999 * 120.02739 * 180.29835 * 18 17 16 35 35 H 1.08999 * 109.46744 * 180.02562 * 21 20 19 36 36 H 1.08005 * 120.02670 * 359.97438 * 24 15 14 37 37 H 1.08001 * 119.96530 * 179.70394 * 25 13 12 38 38 H 1.08004 * 120.03258 * 180.26982 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4472 2.6526 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0016 10 6 2.0699 -3.5047 0.1046 11 6 3.4571 -3.4396 0.0921 12 6 4.2023 -4.5973 0.1997 13 6 3.5685 -5.8207 0.3193 14 6 4.3846 -7.0821 0.4360 15 6 4.6631 -7.3677 1.8892 16 6 5.7975 -6.8528 2.4895 17 6 6.0561 -7.1133 3.8223 18 6 5.1777 -7.8836 4.5598 19 6 4.0417 -8.4057 3.9588 20 8 3.1791 -9.1684 4.6806 21 6 3.5074 -9.3974 6.0524 22 9 3.5800 -8.1729 6.7252 23 9 4.7432 -10.0481 6.1338 24 6 3.7848 -8.1431 2.6208 25 6 2.1871 -5.8894 0.3263 26 6 1.4365 -4.7347 0.2252 27 1 -0.4849 0.8400 0.0004 28 1 3.9526 -2.4845 -0.0017 29 1 5.2811 -4.5473 0.1905 30 1 5.3273 -6.9556 -0.0965 31 1 3.8309 -7.9146 0.0018 32 1 6.4831 -6.2467 1.9158 33 1 6.9430 -6.7104 4.2887 34 1 5.3776 -8.0829 5.6023 35 1 2.7387 -10.0194 6.5110 36 1 2.8985 -8.5444 2.1518 37 1 1.6950 -6.8467 0.4151 38 1 0.3578 -4.7886 0.2351 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250268468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:25 Heat of formation + Delta-G solvation = -146.276230 kcal Electronic energy + Delta-G solvation = -25368.454415 eV Core-core repulsion = 21197.407837 eV Total energy + Delta-G solvation = -4171.046579 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.101 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.31589 -48.31741 -41.13702 -40.65002 -38.97398 -37.99697 -34.54502 -33.81209 -31.83906 -31.44284 -30.51805 -27.71674 -27.08950 -26.45134 -23.87693 -23.33672 -22.93507 -21.79744 -19.86189 -19.60062 -19.05390 -18.88603 -18.78226 -17.20489 -16.92461 -16.42340 -16.38163 -16.03699 -15.83248 -15.60424 -15.51428 -15.11953 -14.98604 -14.86757 -14.65298 -14.47099 -14.33385 -14.15324 -13.99842 -13.60008 -13.53691 -13.01670 -12.92825 -12.77763 -12.48794 -12.32157 -12.16922 -12.13834 -12.10093 -11.81432 -11.14919 -10.77755 -9.81908 -9.75465 -9.37414 -8.86120 -8.46812 -6.14815 0.27549 0.39332 0.62468 0.75142 1.34597 1.44069 1.52275 1.64845 2.17941 2.55761 2.70411 2.84943 3.17633 3.51747 3.54598 3.69776 3.84595 3.87352 4.03530 4.16679 4.19187 4.24643 4.30438 4.38720 4.46960 4.64807 4.69393 4.85143 4.95232 5.02135 5.14941 5.16867 5.21408 5.32486 5.43407 5.56357 5.60289 5.63569 5.73943 5.87784 6.03943 6.11754 6.26554 6.98064 7.79981 8.76723 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.017621 B = 0.002660 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.673210 B =10523.788123 C =10878.060488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.018 2.982 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.413 4.413 8 H 0.101 0.899 9 O -0.235 6.235 10 C 0.110 3.890 11 C -0.243 4.243 12 C -0.062 4.062 13 C -0.151 4.151 14 C -0.021 4.021 15 C -0.041 4.041 16 C -0.146 4.146 17 C -0.088 4.088 18 C -0.211 4.211 19 C 0.088 3.912 20 O -0.331 6.331 21 C 0.405 3.595 22 F -0.213 7.213 23 F -0.209 7.209 24 C -0.144 4.144 25 C -0.062 4.062 26 C -0.206 4.206 27 H 0.272 0.728 28 H 0.117 0.883 29 H 0.144 0.856 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.132 0.868 35 H 0.234 0.766 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.321 -20.298 9.272 25.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.177 1.177 7 C -0.489 4.489 8 H 0.119 0.881 9 O -0.142 6.142 10 C 0.060 3.940 11 C -0.262 4.262 12 C -0.080 4.080 13 C -0.152 4.152 14 C -0.058 4.058 15 C -0.041 4.041 16 C -0.163 4.163 17 C -0.106 4.106 18 C -0.230 4.230 19 C 0.046 3.954 20 O -0.249 6.249 21 C 0.316 3.684 22 F -0.195 7.195 23 F -0.191 7.191 24 C -0.163 4.163 25 C -0.080 4.080 26 C -0.225 4.225 27 H 0.081 0.919 28 H 0.135 0.865 29 H 0.161 0.839 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.162 0.838 33 H 0.165 0.835 34 H 0.150 0.850 35 H 0.249 0.751 36 H 0.159 0.841 37 H 0.165 0.835 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 11.778 -20.204 9.216 25.137 hybrid contribution 0.042 1.218 0.343 1.266 sum 11.820 -18.986 9.559 24.322 Atomic orbital electron populations 1.70190 1.08049 1.28753 1.49091 1.26598 0.96854 1.02763 0.95931 0.84592 0.77798 0.74557 0.79301 1.18682 1.19639 1.17661 1.21820 0.92501 0.81492 1.53087 0.88130 1.83942 1.36018 1.12623 1.81609 1.19958 0.91736 0.87915 0.94405 1.21264 0.93029 1.00146 1.11774 1.20990 0.99976 0.90803 0.96244 1.19586 0.93323 0.94821 1.07458 1.19460 1.00724 0.94494 0.91122 1.19841 0.93451 0.94382 0.96423 1.21342 0.98331 1.01262 0.95414 1.21228 0.99119 0.96129 0.94116 1.21630 0.96228 1.03782 1.01338 1.19033 0.90299 0.93897 0.92219 1.86595 1.48239 1.66969 1.23074 1.24251 0.85296 0.80055 0.78816 1.93077 1.96719 1.48987 1.80697 1.93068 1.49039 1.81262 1.95690 1.20520 1.01845 1.02760 0.91135 1.20919 0.93562 0.96847 0.96684 1.20460 0.99868 0.90742 1.11447 0.91878 0.86483 0.83867 0.88076 0.88432 0.83831 0.83535 0.85030 0.75071 0.84093 0.83520 0.87193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.45 13.67 21.61 0.30 -57.15 16 2 C -0.02 -1.40 5.49 84.83 0.47 -0.94 16 3 Si 1.02 43.33 29.55 68.60 2.03 45.36 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 7 C -0.41 -24.41 9.49 67.92 0.64 -23.77 16 8 H 0.10 5.45 5.20 -2.91 -0.02 5.44 16 9 O -0.23 -14.42 9.76 -22.87 -0.22 -14.64 16 10 C 0.11 5.55 6.65 22.58 0.15 5.70 16 11 C -0.24 -10.59 9.17 22.39 0.21 -10.39 16 12 C -0.06 -2.07 9.69 22.25 0.22 -1.86 16 13 C -0.15 -4.50 5.12 -19.83 -0.10 -4.60 16 14 C -0.02 -0.44 5.47 29.10 0.16 -0.28 16 15 C -0.04 -0.92 5.11 -19.88 -0.10 -1.03 16 16 C -0.15 -3.11 9.70 22.28 0.22 -2.90 16 17 C -0.09 -1.87 10.04 22.25 0.22 -1.65 16 18 C -0.21 -4.93 8.26 22.37 0.18 -4.74 16 19 C 0.09 2.15 6.48 22.51 0.15 2.29 16 20 O -0.33 -6.85 10.43 -92.44 -0.96 -7.81 16 21 C 0.40 5.71 5.98 113.37 0.68 6.39 16 22 F -0.21 -4.09 15.56 44.97 0.70 -3.39 16 23 F -0.21 -3.50 15.60 44.97 0.70 -2.80 16 24 C -0.14 -3.42 9.64 22.37 0.22 -3.20 16 25 C -0.06 -2.06 9.69 22.25 0.22 -1.85 16 26 C -0.21 -8.89 9.99 22.39 0.22 -8.67 16 27 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 28 H 0.12 5.21 5.64 -2.91 -0.02 5.19 16 29 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 30 H 0.10 1.69 8.03 -2.39 -0.02 1.67 16 31 H 0.10 1.68 8.02 -2.39 -0.02 1.66 16 32 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 33 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 34 H 0.13 2.88 5.10 -2.91 -0.01 2.87 16 35 H 0.23 0.60 8.14 -2.39 -0.02 0.59 16 36 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 37 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 38 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -76.82 338.66 7.38 -69.43 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 1.11 Total: 22.46 kcal Atomic # 6 Polarization: -55.20 SS G_CDS: 3.74 Total: -51.46 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.30 Total: -57.15 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -1.19 Total: -22.45 kcal Atomic # 9 Polarization: -7.59 SS G_CDS: 1.40 Total: -6.19 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -76.82 7.38 -69.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250268468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.843 kcal (2) G-P(sol) polarization free energy of solvation -76.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds