Wall clock time and date at job start Tue Mar 31 2020 13:13:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 C 1.38282 * 119.97197 * 2 1
4 4 C 1.38245 * 120.11071 * 180.02562 * 3 2 1
5 5 C 1.38167 * 120.05519 * 359.97438 * 4 3 2
6 6 C 1.50695 * 120.02682 * 179.97438 * 5 4 3
7 7 C 1.38711 * 119.94563 * 359.97438 * 5 4 3
8 8 O 1.35896 * 120.05483 * 180.02562 * 7 5 4
9 9 C 1.42909 * 116.99690 * 179.97438 * 8 7 5
10 10 C 1.50703 * 109.46843 * 180.02562 * 9 8 7
11 11 N 1.30271 * 126.28227 * 89.69515 * 10 9 8
12 12 N 1.28663 * 109.38268 * 180.26103 * 11 10 9
13 13 C 1.30277 * 109.37956 * 359.97438 * 12 11 10
14 14 C 1.50697 * 126.28050 * 180.02562 * 13 12 11
15 15 S 1.81000 * 109.47496 * 89.99783 * 14 13 12
16 16 C 1.76194 * 100.00190 * 179.97438 * 15 14 13
17 17 H 1.08007 * 119.99946 * 359.97438 * 16 15 14
18 18 C 1.38797 * 120.00422 * 180.02562 * 16 15 14
19 19 N 1.31639 * 119.99577 * 0.02562 * 18 16 15
20 20 Si 1.86793 * 120.00478 * 180.02562 * 18 16 15
21 21 H 1.48498 * 109.47085 * 359.97438 * 20 18 16
22 22 H 1.48494 * 109.47304 * 120.00000 * 20 18 16
23 23 H 1.48505 * 109.47161 * 239.99838 * 20 18 16
24 24 O 1.34359 * 107.43658 * 0.02562 * 13 12 11
25 25 C 1.38124 * 119.96945 * 180.26332 * 2 1 3
26 26 H 1.08999 * 109.47937 * 89.99283 * 1 2 3
27 27 H 1.09005 * 109.47019 * 209.99578 * 1 2 3
28 28 H 1.09002 * 109.46763 * 329.99047 * 1 2 3
29 29 H 1.08002 * 119.94571 * 0.02562 * 3 2 1
30 30 H 1.08002 * 119.97246 * 179.97438 * 4 3 2
31 31 H 1.09001 * 109.47285 * 270.02008 * 6 5 4
32 32 H 1.08998 * 109.47644 * 30.01643 * 6 5 4
33 33 H 1.09001 * 109.47468 * 150.02029 * 6 5 4
34 34 H 1.08998 * 109.46639 * 60.00481 * 9 8 7
35 35 H 1.08997 * 109.47374 * 300.00569 * 9 8 7
36 36 H 1.09007 * 109.47017 * 209.99690 * 14 13 12
37 37 H 1.08999 * 109.47089 * 329.99741 * 14 13 12
38 38 H 0.96994 * 119.99798 * 180.02562 * 19 18 16
39 39 H 1.07999 * 120.02711 * 0.02562 * 25 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1978 1.1979 0.0000
4 6 3.5803 1.2012 -0.0005
5 6 4.2752 0.0070 -0.0005
6 6 5.7821 0.0114 -0.0017
7 6 3.5845 -1.1959 0.0005
8 8 4.2658 -2.3718 0.0011
9 6 3.4891 -3.5715 0.0027
10 6 4.4089 -4.7652 0.0037
11 7 4.8843 -5.3713 1.0544
12 7 5.6383 -6.3448 0.6811
13 6 5.6692 -6.3932 -0.6204
14 6 6.4344 -7.3851 -1.4579
15 16 5.3927 -8.8283 -1.7863
16 6 6.5040 -9.7941 -2.7540
17 1 7.4953 -9.4231 -2.9692
18 6 6.1055 -11.0314 -3.2407
19 7 4.8968 -11.4830 -2.9797
20 14 7.2839 -12.0556 -4.2660
21 1 8.5704 -11.3289 -4.4151
22 1 7.5249 -13.3564 -3.5914
23 1 6.6932 -12.2956 -5.6072
24 8 4.8936 -5.3965 -1.0789
25 6 2.1970 -1.1965 -0.0055
26 1 -0.3635 0.0001 -1.0276
27 1 -0.3633 -0.8901 0.5138
28 1 -0.3633 0.8899 0.5140
29 1 1.6565 2.1324 0.0004
30 1 4.1176 2.1381 -0.0010
31 1 6.1447 0.0124 -1.0296
32 1 6.1433 0.9025 0.5117
33 1 6.1485 -0.8774 0.5119
34 1 2.8598 -3.5980 -0.8868
35 1 2.8610 -3.5964 0.8931
36 1 6.7193 -6.9203 -2.4019
37 1 7.3305 -7.6982 -0.9221
38 1 4.6184 -12.3477 -3.3194
39 1 1.6569 -2.1318 -0.0102
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001257687757.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:13:16
Heat of formation + Delta-G solvation = 16.491979 kcal
Electronic energy + Delta-G solvation = -22718.048328 eV
Core-core repulsion = 19140.193046 eV
Total energy + Delta-G solvation = -3577.855282 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 320.098 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-44.06528 -40.65674 -38.08354 -35.99890 -34.18746 -32.99255 -32.59343 -30.62084
-29.52385 -29.50976 -26.83079 -25.63169 -25.05441 -23.25633 -22.49100 -22.00072
-21.29213 -18.19059 -17.99560 -17.20628 -17.03700 -16.48997 -16.09105 -15.84604
-15.06368 -14.95131 -14.62176 -14.44959 -14.23836 -14.00431 -13.52608 -13.33949
-13.15382 -12.91627 -12.90425 -12.74938 -12.22510 -12.18481 -12.14542 -11.70582
-11.61823 -11.30677 -11.23846 -11.18970 -11.16833 -11.01474 -10.79078 -10.24921
-9.31196 -9.23126 -9.03604 -8.58628 -8.38071 -6.79265 -6.39911 -4.15092
0.97948 1.05416 1.11582 2.03032 2.44004 3.04218 3.13863 3.18283
3.23382 3.36515 3.38837 3.83851 4.03818 4.34480 4.36957 4.46881
4.59035 4.68403 4.78889 4.85877 4.95405 4.98357 5.16053 5.23105
5.25868 5.29293 5.37399 5.37804 5.42347 5.48540 5.52011 5.61656
5.68949 5.82994 5.96188 6.00384 6.03882 6.16028 6.26860 6.46179
7.00673 7.44999 8.19240 8.44280 9.06194 10.68210
Molecular weight = 320.10amu
Principal moments of inertia in cm(-1)
A = 0.025916 B = 0.002152 C = 0.002097
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1080.134297 B =13005.924749 C =13348.515273
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 C -0.052 4.052
3 C -0.154 4.154
4 C -0.080 4.080
5 C -0.118 4.118
6 C -0.107 4.107
7 C 0.135 3.865
8 O -0.306 6.306
9 C 0.168 3.832
10 C 0.133 3.867
11 N -0.253 5.253
12 N -0.286 5.286
13 C 0.226 3.774
14 C -0.042 4.042
15 S -0.084 6.084
16 C -0.526 4.526
17 H 0.081 0.919
18 C 0.074 3.926
19 N -0.867 5.867
20 Si 0.926 3.074
21 H -0.269 1.269
22 H -0.278 1.278
23 H -0.279 1.279
24 O -0.212 6.212
25 C -0.206 4.206
26 H 0.073 0.927
27 H 0.068 0.932
28 H 0.068 0.932
29 H 0.123 0.877
30 H 0.129 0.871
31 H 0.068 0.932
32 H 0.065 0.935
33 H 0.071 0.929
34 H 0.097 0.903
35 H 0.111 0.889
36 H 0.100 0.900
37 H 0.116 0.884
38 H 0.271 0.729
39 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.912 24.758 4.392 25.831
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C -0.052 4.052
3 C -0.172 4.172
4 C -0.098 4.098
5 C -0.118 4.118
6 C -0.164 4.164
7 C 0.090 3.910
8 O -0.219 6.219
9 C 0.092 3.908
10 C -0.079 4.079
11 N -0.103 5.103
12 N -0.134 5.134
13 C 0.016 3.984
14 C -0.190 4.190
15 S 0.143 5.857
16 C -0.674 4.674
17 H 0.099 0.901
18 C -0.136 4.136
19 N -0.502 5.502
20 Si 0.752 3.248
21 H -0.194 1.194
22 H -0.204 1.204
23 H -0.204 1.204
24 O -0.090 6.090
25 C -0.224 4.224
26 H 0.091 0.909
27 H 0.087 0.913
28 H 0.087 0.913
29 H 0.141 0.859
30 H 0.147 0.853
31 H 0.087 0.913
32 H 0.084 0.916
33 H 0.090 0.910
34 H 0.115 0.885
35 H 0.129 0.871
36 H 0.119 0.881
37 H 0.134 0.866
38 H 0.080 0.920
39 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges -6.653 24.066 5.899 25.656
hybrid contribution 1.410 -0.297 -2.237 2.661
sum -5.242 23.769 3.662 24.614
Atomic orbital electron populations
1.20828 0.90875 1.03011 1.02607 1.19690 0.96093 0.92403 0.97035
1.20938 0.94074 0.97536 1.04646 1.20869 0.93993 0.96732 0.98179
1.19272 0.96685 0.90149 1.05724 1.20631 0.90407 1.02927 1.02449
1.18715 0.90289 0.84855 0.97102 1.86089 1.35250 1.11715 1.88822
1.20609 0.88482 0.76725 1.05015 1.26799 1.01763 0.98825 0.80543
1.74337 1.07147 1.03239 1.25605 1.74520 1.16194 1.13626 1.09094
1.27614 0.91046 0.88528 0.91182 1.22027 1.00698 0.96577 0.99715
1.85194 1.20009 1.11362 1.69179 1.22745 1.01522 1.05446 1.37668
0.90066 1.25046 0.95930 0.96639 0.95976 1.70009 1.17486 1.19619
1.43060 0.85993 0.80092 0.79492 0.79247 1.19367 1.20371 1.20436
1.84792 1.49741 1.36900 1.37613 1.21139 0.92561 0.99278 1.09438
0.90856 0.91330 0.91311 0.85885 0.85295 0.91295 0.91621 0.91032
0.88463 0.87101 0.88143 0.86631 0.91961 0.85157
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.68 10.01 36.01 0.36 -0.32 16
2 C -0.05 -0.43 5.88 -104.65 -0.62 -1.04 16
3 C -0.15 -1.21 9.70 -39.56 -0.38 -1.59 16
4 C -0.08 -0.66 9.70 -39.60 -0.38 -1.05 16
5 C -0.12 -1.19 5.89 -104.48 -0.62 -1.80 16
6 C -0.11 -0.98 9.79 36.00 0.35 -0.63 16
7 C 0.14 1.48 6.66 -39.22 -0.26 1.22 16
8 O -0.31 -3.79 9.17 -19.41 -0.18 -3.97 16
9 C 0.17 1.89 5.36 36.01 0.19 2.09 16
10 C 0.13 2.12 8.11 -12.94 -0.10 2.02 16
11 N -0.25 -4.67 12.22 32.55 0.40 -4.28 16
12 N -0.29 -5.79 12.22 32.55 0.40 -5.40 16
13 C 0.23 4.40 7.73 -12.94 -0.10 4.30 16
14 C -0.04 -0.83 6.30 36.00 0.23 -0.61 16
15 S -0.08 -2.12 21.42 -107.50 -2.30 -4.42 16
16 C -0.53 -14.20 9.50 30.94 0.29 -13.90 16
17 H 0.08 2.07 7.80 -52.48 -0.41 1.66 16
18 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16
19 N -0.87 -24.94 13.22 55.49 0.73 -24.20 16
20 Si 0.93 20.60 29.55 -169.99 -5.02 15.57 16
21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16
22 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16
23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16
24 O -0.21 -3.81 10.87 5.39 0.06 -3.75 16
25 C -0.21 -1.90 8.69 -39.43 -0.34 -2.24 16
26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16
27 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16
28 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16
29 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16
30 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16
31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
32 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16
33 H 0.07 0.75 7.53 -51.93 -0.39 0.36 16
34 H 0.10 0.87 7.65 -51.93 -0.40 0.48 16
35 H 0.11 1.00 7.68 -51.93 -0.40 0.60 16
36 H 0.10 1.82 8.14 -51.91 -0.42 1.39 16
37 H 0.12 2.17 8.14 -51.92 -0.42 1.75 16
38 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16
39 H 0.13 0.97 6.30 -52.49 -0.33 0.64 16
LS Contribution 357.02 15.07 5.38 5.38
Total: -1.00 -32.23 357.02 -6.87 -39.10
By element:
Atomic # 1 Polarization: 2.46 SS G_CDS: -4.86 Total: -2.39 kcal
Atomic # 6 Polarization: -10.16 SS G_CDS: -1.48 Total: -11.64 kcal
Atomic # 7 Polarization: -35.41 SS G_CDS: 1.53 Total: -33.88 kcal
Atomic # 8 Polarization: -7.60 SS G_CDS: -0.12 Total: -7.72 kcal
Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal
Atomic # 16 Polarization: -2.12 SS G_CDS: -2.30 Total: -4.42 kcal
Total LS contribution 5.38 Total: 5.38 kcal
Total: -32.23 -6.87 -39.10 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001257687757.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.590 kcal
(2) G-P(sol) polarization free energy of solvation -32.228 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.362 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.870 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.098 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.492 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds