Wall clock time and date at job start Tue Mar 31 2020 13:13:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 C 1.38282 * 119.97197 * 2 1
4 4 C 1.38245 * 120.11071 * 180.02562 * 3 2 1
5 5 C 1.38167 * 120.05519 * 359.97438 * 4 3 2
6 6 C 1.50695 * 120.02682 * 179.97438 * 5 4 3
7 7 C 1.38711 * 119.94563 * 359.97438 * 5 4 3
8 8 O 1.35896 * 120.05483 * 180.02562 * 7 5 4
9 9 C 1.42909 * 116.99690 * 179.97438 * 8 7 5
10 10 C 1.50703 * 109.46843 * 180.02562 * 9 8 7
11 11 N 1.30271 * 126.28227 * 89.69515 * 10 9 8
12 12 N 1.28663 * 109.38268 * 180.26103 * 11 10 9
13 13 C 1.30277 * 109.37956 * 359.97438 * 12 11 10
14 14 C 1.50697 * 126.28050 * 180.02562 * 13 12 11
15 15 S 1.81000 * 109.47496 * 89.99783 * 14 13 12
16 16 C 1.76194 * 100.00190 * 179.97438 * 15 14 13
17 17 H 1.08007 * 119.99946 * 359.97438 * 16 15 14
18 18 C 1.38797 * 120.00422 * 180.02562 * 16 15 14
19 19 N 1.31639 * 119.99577 * 0.02562 * 18 16 15
20 20 Si 1.86793 * 120.00478 * 180.02562 * 18 16 15
21 21 H 1.48498 * 109.47085 * 359.97438 * 20 18 16
22 22 H 1.48494 * 109.47304 * 120.00000 * 20 18 16
23 23 H 1.48505 * 109.47161 * 239.99838 * 20 18 16
24 24 O 1.34359 * 107.43658 * 0.02562 * 13 12 11
25 25 C 1.38124 * 119.96945 * 180.26332 * 2 1 3
26 26 H 1.08999 * 109.47937 * 89.99283 * 1 2 3
27 27 H 1.09005 * 109.47019 * 209.99578 * 1 2 3
28 28 H 1.09002 * 109.46763 * 329.99047 * 1 2 3
29 29 H 1.08002 * 119.94571 * 0.02562 * 3 2 1
30 30 H 1.08002 * 119.97246 * 179.97438 * 4 3 2
31 31 H 1.09001 * 109.47285 * 270.02008 * 6 5 4
32 32 H 1.08998 * 109.47644 * 30.01643 * 6 5 4
33 33 H 1.09001 * 109.47468 * 150.02029 * 6 5 4
34 34 H 1.08998 * 109.46639 * 60.00481 * 9 8 7
35 35 H 1.08997 * 109.47374 * 300.00569 * 9 8 7
36 36 H 1.09007 * 109.47017 * 209.99690 * 14 13 12
37 37 H 1.08999 * 109.47089 * 329.99741 * 14 13 12
38 38 H 0.96994 * 119.99798 * 180.02562 * 19 18 16
39 39 H 1.07999 * 120.02711 * 0.02562 * 25 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1978 1.1979 0.0000
4 6 3.5803 1.2012 -0.0005
5 6 4.2752 0.0070 -0.0005
6 6 5.7821 0.0114 -0.0017
7 6 3.5845 -1.1959 0.0005
8 8 4.2658 -2.3718 0.0011
9 6 3.4891 -3.5715 0.0027
10 6 4.4089 -4.7652 0.0037
11 7 4.8843 -5.3713 1.0544
12 7 5.6383 -6.3448 0.6811
13 6 5.6692 -6.3932 -0.6204
14 6 6.4344 -7.3851 -1.4579
15 16 5.3927 -8.8283 -1.7863
16 6 6.5040 -9.7941 -2.7540
17 1 7.4953 -9.4231 -2.9692
18 6 6.1055 -11.0314 -3.2407
19 7 4.8968 -11.4830 -2.9797
20 14 7.2839 -12.0556 -4.2660
21 1 8.5704 -11.3289 -4.4151
22 1 7.5249 -13.3564 -3.5914
23 1 6.6932 -12.2956 -5.6072
24 8 4.8936 -5.3965 -1.0789
25 6 2.1970 -1.1965 -0.0055
26 1 -0.3635 0.0001 -1.0276
27 1 -0.3633 -0.8901 0.5138
28 1 -0.3633 0.8899 0.5140
29 1 1.6565 2.1324 0.0004
30 1 4.1176 2.1381 -0.0010
31 1 6.1447 0.0124 -1.0296
32 1 6.1433 0.9025 0.5117
33 1 6.1485 -0.8774 0.5119
34 1 2.8598 -3.5980 -0.8868
35 1 2.8610 -3.5964 0.8931
36 1 6.7193 -6.9203 -2.4019
37 1 7.3305 -7.6982 -0.9221
38 1 4.6184 -12.3477 -3.3194
39 1 1.6569 -2.1318 -0.0102
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001257687757.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:13:16
Heat of formation + Delta-G solvation = -5.591853 kcal
Electronic energy + Delta-G solvation = -22719.005955 eV
Core-core repulsion = 19140.193046 eV
Total energy + Delta-G solvation = -3578.812909 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 320.098 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-45.50336 -41.39531 -38.82922 -37.45483 -34.90555 -34.66535 -34.27367 -31.53609
-30.56084 -30.10218 -28.22594 -27.59038 -25.67797 -24.35399 -23.91222 -22.96551
-22.00208 -19.94826 -19.15730 -18.49080 -18.24048 -17.47729 -17.06737 -16.93418
-16.50968 -16.33807 -16.00432 -15.72347 -15.10204 -14.76372 -14.67254 -14.52259
-14.10427 -13.98631 -13.74780 -13.68641 -13.44095 -13.25894 -13.16777 -12.96814
-12.94007 -12.79628 -12.69390 -12.29184 -12.22592 -11.98799 -11.90457 -11.82616
-11.20840 -10.95304 -10.42189 -9.67828 -9.08029 -8.82549 -8.42971 -6.23673
-0.33690 0.33688 0.44122 0.64804 1.01691 1.36504 1.41529 1.52933
1.64559 2.06715 2.19119 2.65198 2.73911 2.93742 3.07750 3.24292
3.52643 3.69077 3.85263 3.86769 4.03250 4.11516 4.13648 4.25423
4.28884 4.30316 4.35791 4.47966 4.60366 4.73079 4.76300 4.77892
4.86368 4.88716 5.16886 5.34513 5.35622 5.38794 5.50567 5.65405
5.82445 6.14700 6.27583 6.99376 6.99962 8.66895
Molecular weight = 320.10amu
Principal moments of inertia in cm(-1)
A = 0.025916 B = 0.002152 C = 0.002097
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1080.134297 B =13005.924749 C =13348.515273
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.060 4.060
3 C -0.155 4.155
4 C -0.082 4.082
5 C -0.138 4.138
6 C -0.105 4.105
7 C 0.111 3.889
8 O -0.325 6.325
9 C 0.167 3.833
10 C 0.155 3.845
11 N -0.280 5.280
12 N -0.304 5.304
13 C 0.213 3.787
14 C -0.017 4.017
15 S -0.149 6.149
16 C -0.538 4.538
17 H 0.090 0.910
18 C 0.017 3.983
19 N -0.908 5.908
20 Si 1.001 2.999
21 H -0.257 1.257
22 H -0.274 1.274
23 H -0.273 1.273
24 O -0.216 6.216
25 C -0.213 4.213
26 H 0.080 0.920
27 H 0.072 0.928
28 H 0.081 0.919
29 H 0.147 0.853
30 H 0.152 0.848
31 H 0.068 0.932
32 H 0.084 0.916
33 H 0.050 0.950
34 H 0.123 0.877
35 H 0.136 0.864
36 H 0.119 0.881
37 H 0.126 0.874
38 H 0.274 0.726
39 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.160 26.580 3.806 27.549
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C -0.060 4.060
3 C -0.173 4.173
4 C -0.099 4.099
5 C -0.139 4.139
6 C -0.162 4.162
7 C 0.066 3.934
8 O -0.239 6.239
9 C 0.091 3.909
10 C -0.057 4.057
11 N -0.129 5.129
12 N -0.152 5.152
13 C 0.003 3.997
14 C -0.166 4.166
15 S 0.078 5.922
16 C -0.686 4.686
17 H 0.108 0.892
18 C -0.188 4.188
19 N -0.544 5.544
20 Si 0.823 3.177
21 H -0.180 1.180
22 H -0.200 1.200
23 H -0.198 1.198
24 O -0.095 6.095
25 C -0.232 4.232
26 H 0.098 0.902
27 H 0.091 0.909
28 H 0.100 0.900
29 H 0.165 0.835
30 H 0.169 0.831
31 H 0.087 0.913
32 H 0.102 0.898
33 H 0.069 0.931
34 H 0.141 0.859
35 H 0.153 0.847
36 H 0.138 0.862
37 H 0.144 0.856
38 H 0.083 0.917
39 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges -6.905 25.911 5.335 27.340
hybrid contribution 1.396 -0.639 -1.983 2.508
sum -5.508 25.272 3.352 26.082
Atomic orbital electron populations
1.20878 0.89127 1.03916 1.03296 1.20059 0.97478 0.92213 0.96226
1.21307 0.94103 0.98497 1.03405 1.21170 0.94487 0.96945 0.97348
1.19545 0.97121 0.90698 1.06554 1.20607 0.90345 1.02805 1.02395
1.18969 0.91154 0.84372 0.98869 1.86025 1.36082 1.12290 1.89519
1.20974 0.87341 0.75101 1.07476 1.27785 0.99841 0.98695 0.79388
1.74294 1.08296 1.03786 1.26515 1.74455 1.16819 1.14362 1.09570
1.27389 0.92079 0.89292 0.90986 1.21803 0.99636 0.94250 1.00918
1.85219 1.22790 1.14661 1.69518 1.23118 1.01933 1.05922 1.37613
0.89171 1.26113 0.97649 0.97916 0.97123 1.70145 1.19561 1.20257
1.44485 0.84863 0.78016 0.77525 0.77338 1.18031 1.19970 1.19805
1.84802 1.49648 1.36754 1.38291 1.21371 0.92005 1.00512 1.09278
0.90158 0.90893 0.90030 0.83525 0.83081 0.91321 0.89760 0.93095
0.85899 0.84685 0.86231 0.85586 0.91726 0.83753
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.04 10.01 71.24 0.71 -0.32 16
2 C -0.06 -0.85 5.88 -19.88 -0.12 -0.97 16
3 C -0.16 -2.04 9.70 22.28 0.22 -1.83 16
4 C -0.08 -1.19 9.70 22.25 0.22 -0.98 16
5 C -0.14 -2.67 5.89 -19.77 -0.12 -2.79 16
6 C -0.10 -1.88 9.79 71.23 0.70 -1.18 16
7 C 0.11 2.33 6.66 22.51 0.15 2.48 16
8 O -0.33 -7.90 9.17 -92.38 -0.85 -8.75 16
9 C 0.17 3.55 5.36 71.24 0.38 3.93 16
10 C 0.16 4.89 8.11 88.34 0.72 5.61 16
11 N -0.28 -10.36 12.22 -165.50 -2.02 -12.39 16
12 N -0.30 -12.42 12.22 -165.51 -2.02 -14.44 16
13 C 0.21 8.33 7.73 88.34 0.68 9.01 16
14 C -0.02 -0.69 6.30 71.24 0.45 -0.24 16
15 S -0.15 -7.66 21.42 -56.49 -1.21 -8.87 16
16 C -0.54 -29.13 9.50 67.95 0.65 -28.48 16
17 H 0.09 4.55 7.80 -2.91 -0.02 4.52 16
18 C 0.02 0.94 5.49 84.86 0.47 1.41 16
19 N -0.91 -53.00 13.22 21.65 0.29 -52.71 16
20 Si 1.00 41.90 29.55 68.60 2.03 43.92 16
21 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16
22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16
23 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16
24 O -0.22 -7.70 10.87 -3.62 -0.04 -7.74 16
25 C -0.21 -3.59 8.69 22.37 0.19 -3.40 16
26 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16
27 H 0.07 0.59 8.09 -2.38 -0.02 0.58 16
28 H 0.08 0.53 8.09 -2.39 -0.02 0.51 16
29 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16
30 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16
31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16
32 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16
33 H 0.05 1.10 7.53 -2.39 -0.02 1.08 16
34 H 0.12 1.97 7.65 -2.39 -0.02 1.95 16
35 H 0.14 2.19 7.68 -2.39 -0.02 2.18 16
36 H 0.12 4.24 8.14 -2.39 -0.02 4.22 16
37 H 0.13 4.69 8.14 -2.40 -0.02 4.67 16
38 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16
39 H 0.14 1.85 6.30 -2.91 -0.02 1.83 16
Total: -1.00 -70.55 357.02 2.54 -68.01
By element:
Atomic # 1 Polarization: 9.65 SS G_CDS: 1.07 Total: 10.73 kcal
Atomic # 6 Polarization: -23.05 SS G_CDS: 5.30 Total: -17.75 kcal
Atomic # 7 Polarization: -75.79 SS G_CDS: -3.76 Total: -79.55 kcal
Atomic # 8 Polarization: -15.61 SS G_CDS: -0.89 Total: -16.49 kcal
Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal
Atomic # 16 Polarization: -7.66 SS G_CDS: -1.21 Total: -8.87 kcal
Total: -70.55 2.54 -68.01 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001257687757.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.419 kcal
(2) G-P(sol) polarization free energy of solvation -70.549 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.130 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.011 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.592 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds