Wall clock time and date at job start Tue Mar 31 2020 12:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99958 * 2 1 4 4 H 1.48501 * 109.47247 * 269.99605 * 3 2 1 5 5 H 1.48503 * 109.47200 * 29.99556 * 3 2 1 6 6 H 1.48503 * 109.46932 * 149.99691 * 3 2 1 7 7 C 1.38941 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00395 * 0.02562 * 7 2 1 9 9 N 1.37102 * 120.00159 * 180.02562 * 7 2 1 10 10 C 1.34780 * 120.00045 * 180.02562 * 9 7 2 11 11 O 1.21296 * 120.00175 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99815 * 179.97438 * 10 9 7 13 13 N 1.46495 * 109.46997 * 185.47860 * 12 10 9 14 14 C 1.34778 * 120.00039 * 185.61450 * 13 12 10 15 15 O 1.21279 * 120.00052 * 354.45068 * 14 13 12 16 16 C 1.50702 * 120.00160 * 174.45162 * 14 13 12 17 17 S 1.81396 * 115.54999 * 312.79982 * 16 14 13 18 18 C 1.76206 * 102.99817 * 293.92847 * 17 16 14 19 19 C 1.38972 * 120.08093 * 354.03026 * 18 17 16 20 20 C 1.38074 * 119.91839 * 179.77262 * 19 18 17 21 21 C 1.38303 * 120.08070 * 0.50876 * 20 19 18 22 22 C 1.38302 * 120.16154 * 359.74350 * 21 20 19 23 23 C 1.38081 * 120.07939 * 0.02562 * 22 21 20 24 24 C 1.53002 * 117.49801 * 98.46696 * 16 14 13 25 25 C 1.52993 * 117.49939 * 167.12516 * 16 14 13 26 26 H 0.97006 * 120.00099 * 0.02562 * 1 2 3 27 27 H 0.96997 * 119.99729 * 359.97438 * 9 7 2 28 28 H 1.09006 * 109.46743 * 65.48434 * 12 10 9 29 29 H 1.09000 * 109.47506 * 305.48078 * 12 10 9 30 30 H 0.96997 * 120.00275 * 5.61613 * 13 12 10 31 31 H 1.08005 * 120.03714 * 0.02562 * 19 18 17 32 32 H 1.08003 * 119.95928 * 180.27915 * 20 19 18 33 33 H 1.08004 * 119.92004 * 179.73106 * 21 20 19 34 34 H 1.07997 * 119.95769 * 180.02562 * 22 21 20 35 35 H 1.08000 * 120.03982 * 180.02562 * 23 22 21 36 36 H 1.08999 * 117.49804 * 215.00477 * 24 16 14 37 37 H 1.08996 * 117.49814 * 0.02562 * 24 16 14 38 38 H 1.08999 * 117.49961 * 359.97438 * 25 16 14 39 39 H 1.09005 * 117.50121 * 144.97345 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0011 10 6 4.0537 -2.3705 0.0011 11 8 3.4473 -3.4210 0.0011 12 6 5.5607 -2.3705 0.0011 13 7 6.0490 -3.7454 -0.1308 14 6 7.3688 -4.0033 -0.0408 15 8 8.1607 -3.0890 0.0483 16 6 7.8607 -5.4278 -0.0510 17 16 6.9789 -6.5678 1.0505 18 6 7.3783 -5.9575 2.6545 19 6 8.2959 -4.9237 2.7979 20 6 8.6029 -4.4448 4.0560 21 6 8.0063 -4.9999 5.1736 22 6 7.0966 -6.0324 5.0351 23 6 6.7812 -6.5131 3.7798 24 6 8.3793 -5.9866 -1.3775 25 6 9.3604 -5.6559 -0.2500 26 1 -0.4850 0.8401 -0.0004 27 1 3.8648 -0.3633 0.0007 28 1 5.9240 -1.9441 0.9362 29 1 5.9241 -1.7740 -0.8357 30 1 5.4226 -4.4701 -0.2829 31 1 8.7652 -4.4925 1.9259 32 1 9.3125 -3.6384 4.1679 33 1 8.2516 -4.6262 6.1568 34 1 6.6325 -6.4631 5.9100 35 1 6.0704 -7.3192 3.6724 36 1 8.1907 -7.0393 -1.5883 37 1 8.3652 -5.3238 -2.2427 38 1 9.9913 -4.7758 -0.3740 39 1 9.8173 -6.4908 0.2813 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258173698.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:02 Heat of formation + Delta-G solvation = -10.962215 kcal Electronic energy + Delta-G solvation = -23836.417299 eV Core-core repulsion = 20257.371514 eV Total energy + Delta-G solvation = -3579.045785 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.13763 -38.95781 -38.47321 -36.50150 -34.57829 -33.79713 -31.81299 -31.13937 -31.04007 -28.40761 -25.16452 -23.77709 -22.94394 -22.79771 -22.39860 -20.27218 -19.64193 -18.78011 -18.09588 -17.68195 -16.13034 -16.01371 -15.93105 -15.31410 -15.18592 -15.03807 -14.88114 -14.44673 -14.06271 -13.84216 -13.48360 -13.29891 -13.16403 -13.06004 -12.52608 -12.24761 -12.16545 -12.05775 -11.85719 -11.39657 -11.33205 -11.25083 -10.88042 -10.65970 -10.65494 -10.07252 -9.88985 -9.77769 -9.70775 -9.08287 -8.99337 -8.77194 -8.31417 -7.54296 -6.41542 -3.94085 1.05784 1.21859 1.26859 1.92961 2.61015 2.98062 3.02302 3.03173 3.11575 3.36881 3.54861 3.61207 4.02366 4.22599 4.41464 4.47047 4.63261 4.75486 4.83531 5.00383 5.12678 5.17628 5.23852 5.28905 5.40881 5.49465 5.62834 5.63092 5.70491 5.73562 5.75992 5.87852 6.16078 6.26787 6.39023 6.46388 6.78997 7.42421 7.61098 7.98522 8.19752 8.44328 8.80866 9.28651 9.62151 10.70640 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.013988 B = 0.003531 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.235759 B = 7927.543753 C = 8676.792622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.046 3.954 3 Si 0.878 3.122 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.310 4.310 8 H 0.122 0.878 9 N -0.576 5.576 10 C 0.437 3.563 11 O -0.573 6.573 12 C 0.107 3.893 13 N -0.692 5.692 14 C 0.552 3.448 15 O -0.540 6.540 16 C -0.182 4.182 17 S -0.031 6.031 18 C -0.094 4.094 19 C -0.124 4.124 20 C -0.102 4.102 21 C -0.124 4.124 22 C -0.105 4.105 23 C -0.098 4.098 24 C -0.112 4.112 25 C -0.125 4.125 26 H 0.276 0.724 27 H 0.374 0.626 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.417 0.583 31 H 0.132 0.868 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.731 -10.892 3.907 22.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.158 4.158 3 Si 0.704 3.296 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.438 4.438 8 H 0.140 0.860 9 N -0.214 5.214 10 C 0.223 3.777 11 O -0.457 6.457 12 C -0.021 4.021 13 N -0.345 5.345 14 C 0.335 3.665 15 O -0.419 6.419 16 C -0.295 4.295 17 S 0.216 5.784 18 C -0.206 4.206 19 C -0.147 4.147 20 C -0.122 4.122 21 C -0.145 4.145 22 C -0.125 4.125 23 C -0.122 4.122 24 C -0.151 4.151 25 C -0.165 4.165 26 H 0.086 0.914 27 H 0.207 0.793 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.256 0.744 31 H 0.150 0.850 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 18.888 -11.771 3.555 22.538 hybrid contribution 0.807 2.283 0.452 2.464 sum 19.696 -9.487 4.007 22.226 Atomic orbital electron populations 1.69618 1.05691 1.27795 1.48178 1.25052 0.95518 0.98109 0.97153 0.86686 0.79917 0.83850 0.79124 1.19382 1.19941 1.19292 1.19446 0.78907 0.96828 1.48618 0.86036 1.42118 1.07712 1.06050 1.65524 1.19583 0.87903 0.84979 0.85213 1.90564 1.69053 1.30795 1.55299 1.21026 0.94170 0.83722 1.03184 1.45517 1.07199 1.10473 1.71357 1.19069 0.82634 0.88252 0.76593 1.90690 1.55053 1.45477 1.50667 1.23848 1.02603 0.97093 1.06002 1.85192 1.63140 1.36047 0.94020 1.21852 1.00921 1.00713 0.97131 1.21437 0.97851 0.96528 0.98913 1.21083 0.99633 0.99320 0.92163 1.21200 0.97547 0.97006 0.98703 1.21067 0.97723 0.96895 0.96790 1.20752 0.99753 1.00520 0.91151 1.23070 0.99334 1.02760 0.89899 1.23336 0.88273 1.04287 1.00589 0.91380 0.79306 0.89497 0.89792 0.74370 0.84979 0.85798 0.85880 0.85524 0.85491 0.86618 0.86828 0.86575 0.86800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.00 13.96 55.50 0.77 -24.22 16 2 C 0.05 1.23 5.50 -17.47 -0.10 1.14 16 3 Si 0.88 19.04 27.74 -169.99 -4.71 14.32 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 7 C -0.31 -8.57 10.16 -14.93 -0.15 -8.72 16 8 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 9 N -0.58 -13.50 5.09 -10.96 -0.06 -13.56 16 10 C 0.44 9.76 7.85 -10.98 -0.09 9.68 16 11 O -0.57 -14.73 15.28 5.54 0.08 -14.65 16 12 C 0.11 1.89 6.16 -5.20 -0.03 1.85 16 13 N -0.69 -11.54 5.40 -61.47 -0.33 -11.88 16 14 C 0.55 8.44 6.05 -10.98 -0.07 8.37 16 15 O -0.54 -9.29 15.67 5.56 0.09 -9.20 16 16 C -0.18 -2.18 1.35 -91.77 -0.12 -2.30 16 17 S -0.03 -0.38 21.52 -107.50 -2.31 -2.69 16 18 C -0.09 -1.25 6.09 -39.04 -0.24 -1.49 16 19 C -0.12 -1.65 8.94 -39.37 -0.35 -2.01 16 20 C -0.10 -1.21 10.04 -39.62 -0.40 -1.61 16 21 C -0.12 -1.33 10.04 -39.53 -0.40 -1.72 16 22 C -0.10 -1.14 10.04 -39.62 -0.40 -1.53 16 23 C -0.10 -1.20 9.79 -39.37 -0.39 -1.58 16 24 C -0.11 -0.99 10.00 -26.69 -0.27 -1.26 16 25 C -0.13 -1.17 8.87 -26.70 -0.24 -1.40 16 26 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.37 7.73 5.76 -40.82 -0.24 7.49 16 28 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.42 7.18 7.28 -40.82 -0.30 6.88 16 31 H 0.13 1.83 4.39 -52.48 -0.23 1.59 16 32 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 33 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.12 1.13 7.73 -51.93 -0.40 0.72 16 39 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 350.07 15.07 5.28 5.28 Total: -1.00 -32.64 350.07 -8.95 -41.58 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -4.53 Total: 17.60 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -3.23 Total: -2.59 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 0.39 Total: -49.65 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: 0.17 Total: -23.85 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.71 Total: 14.32 kcal Atomic # 16 Polarization: -0.38 SS G_CDS: -2.31 Total: -2.69 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.64 -8.95 -41.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258173698.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.623 kcal (2) G-P(sol) polarization free energy of solvation -32.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds