Wall clock time and date at job start Tue Mar 31 2020 12:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99958 * 2 1 4 4 H 1.48501 * 109.47247 * 269.99605 * 3 2 1 5 5 H 1.48503 * 109.47200 * 29.99556 * 3 2 1 6 6 H 1.48503 * 109.46932 * 149.99691 * 3 2 1 7 7 C 1.38941 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00395 * 0.02562 * 7 2 1 9 9 N 1.37102 * 120.00159 * 180.02562 * 7 2 1 10 10 C 1.34780 * 120.00045 * 180.02562 * 9 7 2 11 11 O 1.21296 * 120.00175 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99815 * 179.97438 * 10 9 7 13 13 N 1.46495 * 109.46997 * 185.47860 * 12 10 9 14 14 C 1.34778 * 120.00039 * 185.61450 * 13 12 10 15 15 O 1.21279 * 120.00052 * 354.45068 * 14 13 12 16 16 C 1.50702 * 120.00160 * 174.45162 * 14 13 12 17 17 S 1.81396 * 115.54999 * 312.79982 * 16 14 13 18 18 C 1.76206 * 102.99817 * 293.92847 * 17 16 14 19 19 C 1.38972 * 120.08093 * 354.03026 * 18 17 16 20 20 C 1.38074 * 119.91839 * 179.77262 * 19 18 17 21 21 C 1.38303 * 120.08070 * 0.50876 * 20 19 18 22 22 C 1.38302 * 120.16154 * 359.74350 * 21 20 19 23 23 C 1.38081 * 120.07939 * 0.02562 * 22 21 20 24 24 C 1.53002 * 117.49801 * 98.46696 * 16 14 13 25 25 C 1.52993 * 117.49939 * 167.12516 * 16 14 13 26 26 H 0.97006 * 120.00099 * 0.02562 * 1 2 3 27 27 H 0.96997 * 119.99729 * 359.97438 * 9 7 2 28 28 H 1.09006 * 109.46743 * 65.48434 * 12 10 9 29 29 H 1.09000 * 109.47506 * 305.48078 * 12 10 9 30 30 H 0.96997 * 120.00275 * 5.61613 * 13 12 10 31 31 H 1.08005 * 120.03714 * 0.02562 * 19 18 17 32 32 H 1.08003 * 119.95928 * 180.27915 * 20 19 18 33 33 H 1.08004 * 119.92004 * 179.73106 * 21 20 19 34 34 H 1.07997 * 119.95769 * 180.02562 * 22 21 20 35 35 H 1.08000 * 120.03982 * 180.02562 * 23 22 21 36 36 H 1.08999 * 117.49804 * 215.00477 * 24 16 14 37 37 H 1.08996 * 117.49814 * 0.02562 * 24 16 14 38 38 H 1.08999 * 117.49961 * 359.97438 * 25 16 14 39 39 H 1.09005 * 117.50121 * 144.97345 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0011 10 6 4.0537 -2.3705 0.0011 11 8 3.4473 -3.4210 0.0011 12 6 5.5607 -2.3705 0.0011 13 7 6.0490 -3.7454 -0.1308 14 6 7.3688 -4.0033 -0.0408 15 8 8.1607 -3.0890 0.0483 16 6 7.8607 -5.4278 -0.0510 17 16 6.9789 -6.5678 1.0505 18 6 7.3783 -5.9575 2.6545 19 6 8.2959 -4.9237 2.7979 20 6 8.6029 -4.4448 4.0560 21 6 8.0063 -4.9999 5.1736 22 6 7.0966 -6.0324 5.0351 23 6 6.7812 -6.5131 3.7798 24 6 8.3793 -5.9866 -1.3775 25 6 9.3604 -5.6559 -0.2500 26 1 -0.4850 0.8401 -0.0004 27 1 3.8648 -0.3633 0.0007 28 1 5.9240 -1.9441 0.9362 29 1 5.9241 -1.7740 -0.8357 30 1 5.4226 -4.4701 -0.2829 31 1 8.7652 -4.4925 1.9259 32 1 9.3125 -3.6384 4.1679 33 1 8.2516 -4.6262 6.1568 34 1 6.6325 -6.4631 5.9100 35 1 6.0704 -7.3192 3.6724 36 1 8.1907 -7.0393 -1.5883 37 1 8.3652 -5.3238 -2.2427 38 1 9.9913 -4.7758 -0.3740 39 1 9.8173 -6.4908 0.2813 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258173698.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:01 Heat of formation + Delta-G solvation = -32.932977 kcal Electronic energy + Delta-G solvation = -23837.370023 eV Core-core repulsion = 20257.371514 eV Total energy + Delta-G solvation = -3579.998509 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.37174 -40.25586 -39.79974 -37.45655 -36.31864 -35.41674 -33.86030 -32.00944 -31.91286 -29.92215 -26.81406 -25.05955 -23.81414 -23.66155 -23.24446 -21.53858 -21.40085 -20.54414 -19.34959 -18.63458 -17.57829 -17.34339 -16.93387 -16.76144 -16.68055 -16.35007 -15.88511 -15.74307 -15.32230 -15.11179 -14.84158 -14.41266 -14.35675 -14.17928 -14.08176 -13.96310 -13.68367 -12.99482 -12.93991 -12.58928 -12.47196 -12.22724 -12.18524 -12.02447 -11.71966 -11.66381 -11.60581 -10.91624 -10.72336 -10.67763 -10.36847 -10.27224 -9.97987 -8.47776 -8.47348 -6.09641 0.15691 0.31694 0.37214 0.96974 1.28872 1.31644 1.41808 1.55446 1.73262 1.85024 2.18482 2.51205 2.72734 2.79317 3.08441 3.36491 3.47062 3.70884 3.89475 3.95606 3.99023 4.20810 4.27298 4.31327 4.44307 4.46315 4.53489 4.57568 4.76537 4.80737 5.02092 5.04664 5.12909 5.26783 5.41614 5.45820 5.52088 5.85530 5.94667 6.31777 6.46032 6.75660 6.93923 7.25898 7.74868 8.69142 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.013988 B = 0.003531 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.235759 B = 7927.543753 C = 8676.792622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.006 4.006 3 Si 0.958 3.042 4 H -0.255 1.255 5 H -0.272 1.272 6 H -0.235 1.235 7 C -0.332 4.332 8 H 0.063 0.937 9 N -0.576 5.576 10 C 0.443 3.557 11 O -0.611 6.611 12 C 0.119 3.881 13 N -0.701 5.701 14 C 0.555 3.445 15 O -0.560 6.560 16 C -0.201 4.201 17 S -0.039 6.039 18 C -0.113 4.113 19 C -0.141 4.141 20 C -0.113 4.113 21 C -0.125 4.125 22 C -0.107 4.107 23 C -0.116 4.116 24 C -0.095 4.095 25 C -0.111 4.111 26 H 0.282 0.718 27 H 0.392 0.608 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.414 0.586 31 H 0.124 0.876 32 H 0.139 0.861 33 H 0.151 0.849 34 H 0.153 0.847 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.120 0.880 38 H 0.113 0.887 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.502 -9.896 4.344 24.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.206 4.206 3 Si 0.778 3.222 4 H -0.179 1.179 5 H -0.197 1.197 6 H -0.158 1.158 7 C -0.461 4.461 8 H 0.081 0.919 9 N -0.216 5.216 10 C 0.231 3.769 11 O -0.497 6.497 12 C -0.009 4.009 13 N -0.354 5.354 14 C 0.340 3.660 15 O -0.440 6.440 16 C -0.315 4.315 17 S 0.208 5.792 18 C -0.225 4.225 19 C -0.165 4.165 20 C -0.132 4.132 21 C -0.145 4.145 22 C -0.127 4.127 23 C -0.139 4.139 24 C -0.133 4.133 25 C -0.150 4.150 26 H 0.091 0.909 27 H 0.227 0.773 28 H 0.118 0.882 29 H 0.127 0.873 30 H 0.252 0.748 31 H 0.142 0.858 32 H 0.157 0.843 33 H 0.169 0.831 34 H 0.170 0.830 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.138 0.862 38 H 0.131 0.869 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 21.692 -10.792 3.996 24.555 hybrid contribution -0.081 1.843 0.351 1.878 sum 21.611 -8.948 4.347 23.790 Atomic orbital electron populations 1.69781 1.08021 1.29495 1.49126 1.26050 0.96414 1.02524 0.95629 0.85457 0.79505 0.77070 0.80156 1.17891 1.19701 1.15812 1.19028 0.80883 0.95309 1.50891 0.91907 1.41913 1.06176 1.07298 1.66236 1.20444 0.89916 0.83974 0.82610 1.90550 1.70656 1.32293 1.56169 1.20920 0.89980 0.85114 1.04873 1.45607 1.07884 1.09796 1.72109 1.19510 0.81668 0.89540 0.75331 1.90670 1.55256 1.46592 1.51452 1.23803 1.04308 0.95149 1.08225 1.85126 1.63847 1.36052 0.94178 1.22048 1.01502 1.01280 0.97719 1.21477 0.98516 0.97139 0.99354 1.21380 1.00027 0.99776 0.92063 1.21565 0.96787 0.96497 0.99651 1.21445 0.97419 0.96666 0.97134 1.21025 1.00170 1.01050 0.91672 1.23296 0.97261 1.03905 0.88872 1.23420 0.86659 1.04574 1.00388 0.90862 0.77257 0.88232 0.87274 0.74812 0.85801 0.84295 0.83105 0.82966 0.84885 0.84567 0.86205 0.86881 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.44 13.96 21.66 0.30 -54.14 16 2 C -0.01 -0.33 5.50 84.92 0.47 0.14 16 3 Si 0.96 38.15 27.74 68.60 1.90 40.05 16 4 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 5 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 6 H -0.23 -8.03 6.52 99.48 0.65 -7.38 16 7 C -0.33 -19.02 10.16 84.04 0.85 -18.16 16 8 H 0.06 4.25 7.39 -2.91 -0.02 4.23 16 9 N -0.58 -26.85 5.09 -306.98 -1.56 -28.41 16 10 C 0.44 19.82 7.85 87.66 0.69 20.51 16 11 O -0.61 -32.44 15.28 -3.08 -0.05 -32.49 16 12 C 0.12 4.02 6.16 85.63 0.53 4.55 16 13 N -0.70 -22.89 5.40 -466.79 -2.52 -25.41 16 14 C 0.56 16.37 6.05 87.66 0.53 16.90 16 15 O -0.56 -18.46 15.67 -3.03 -0.05 -18.51 16 16 C -0.20 -4.59 1.35 -11.54 -0.02 -4.61 16 17 S -0.04 -0.94 21.52 -56.49 -1.22 -2.16 16 18 C -0.11 -2.97 6.09 22.62 0.14 -2.84 16 19 C -0.14 -3.68 8.94 22.41 0.20 -3.48 16 20 C -0.11 -2.52 10.04 22.25 0.22 -2.29 16 21 C -0.12 -2.41 10.04 22.30 0.22 -2.19 16 22 C -0.11 -2.14 10.04 22.25 0.22 -1.92 16 23 C -0.12 -2.75 9.79 22.41 0.22 -2.54 16 24 C -0.09 -1.48 10.00 30.62 0.31 -1.17 16 25 C -0.11 -1.86 8.87 30.62 0.27 -1.59 16 26 H 0.28 15.13 8.31 -92.70 -0.77 14.36 16 27 H 0.39 15.29 5.76 -92.71 -0.53 14.75 16 28 H 0.10 3.18 8.14 -2.38 -0.02 3.16 16 29 H 0.11 3.20 8.14 -2.39 -0.02 3.19 16 30 H 0.41 14.31 7.28 -92.71 -0.67 13.63 16 31 H 0.12 3.36 4.39 -2.91 -0.01 3.34 16 32 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 33 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 34 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 35 H 0.13 2.86 8.06 -2.91 -0.02 2.83 16 36 H 0.14 1.57 8.14 -2.39 -0.02 1.56 16 37 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.11 2.00 7.73 -2.39 -0.02 1.98 16 39 H 0.13 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -74.43 350.07 1.51 -72.92 By element: Atomic # 1 Polarization: 46.98 SS G_CDS: -0.16 Total: 46.82 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 4.86 Total: 1.33 kcal Atomic # 7 Polarization: -104.18 SS G_CDS: -3.78 Total: -107.97 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -0.09 Total: -51.00 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 1.90 Total: 40.05 kcal Atomic # 16 Polarization: -0.94 SS G_CDS: -1.22 Total: -2.16 kcal Total: -74.43 1.51 -72.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258173698.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.991 kcal (2) G-P(sol) polarization free energy of solvation -74.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds