Wall clock time and date at job start Tue Mar 31 2020 12:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00099 * 2 1 4 4 H 1.48500 * 109.46842 * 269.99587 * 3 2 1 5 5 H 1.48505 * 109.47306 * 29.99183 * 3 2 1 6 6 H 1.48498 * 109.47255 * 149.99545 * 3 2 1 7 7 C 1.37871 * 119.99486 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99698 * 173.69590 * 7 2 1 9 9 C 1.50696 * 120.00538 * 353.69096 * 7 2 1 10 10 C 1.53001 * 115.55051 * 85.65078 * 9 7 2 11 11 S 1.81405 * 109.46961 * 65.33186 * 10 9 7 12 12 C 1.81397 * 102.99788 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47191 * 179.97438 * 12 11 10 14 14 N 1.30496 * 125.65094 * 270.27877 * 13 12 11 15 15 C 1.34130 * 109.25402 * 180.14548 * 14 13 12 16 16 C 1.34668 * 108.02486 * 359.61449 * 15 14 13 17 17 N 1.35043 * 125.64682 * 89.99799 * 13 12 11 18 18 C 1.46497 * 126.39906 * 0.02562 * 17 13 12 19 19 C 1.53002 * 109.47184 * 85.02439 * 18 17 13 20 20 F 1.39898 * 109.46974 * 59.99965 * 19 18 17 21 21 F 1.39897 * 109.47145 * 180.02562 * 19 18 17 22 22 F 1.39895 * 109.47049 * 299.99858 * 19 18 17 23 23 C 1.53003 * 117.50410 * 231.32340 * 9 7 2 24 24 C 1.53005 * 117.50034 * 299.98438 * 9 7 2 25 25 H 0.97007 * 119.99985 * 355.02356 * 1 2 3 26 26 H 1.09000 * 109.47146 * 305.33828 * 10 9 7 27 27 H 1.09002 * 109.47390 * 185.33467 * 10 9 7 28 28 H 1.09005 * 109.47379 * 60.00195 * 12 11 10 29 29 H 1.08993 * 109.47369 * 300.00163 * 12 11 10 30 30 H 1.08007 * 125.98867 * 179.88882 * 15 14 13 31 31 H 1.07993 * 126.59622 * 180.24988 * 16 15 14 32 32 H 1.09008 * 109.47169 * 205.01995 * 18 17 13 33 33 H 1.08998 * 109.47163 * 325.02422 * 18 17 13 34 34 H 1.08996 * 117.49819 * 215.00639 * 23 9 7 35 35 H 1.09001 * 117.49391 * 0.02562 * 23 9 7 36 36 H 1.09004 * 117.49477 * 359.97374 * 24 9 7 37 37 H 1.08992 * 117.49748 * 144.97189 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0796 -1.1970 -0.1022 9 6 1.2578 -2.4951 0.1445 10 6 0.7095 -3.0886 -1.1547 11 16 2.0893 -3.5562 -2.2355 12 6 1.2525 -4.2267 -3.6986 13 6 2.2812 -4.6664 -4.7083 14 7 2.7903 -3.9200 -5.6499 15 6 3.6699 -4.6422 -6.3597 16 6 3.7136 -5.8808 -5.8329 17 7 2.8328 -5.8967 -4.7852 18 6 2.5424 -7.0358 -3.9109 19 6 1.3098 -7.7775 -4.4321 20 9 1.5565 -8.2369 -5.7303 21 9 1.0322 -8.8649 -3.5970 22 9 0.2136 -6.9085 -4.4454 23 6 1.7408 -3.4718 1.2187 24 6 0.4340 -2.6998 1.4175 25 1 -0.4850 0.8369 0.0729 26 1 0.0881 -2.3482 -1.6586 27 1 0.1111 -3.9708 -0.9272 28 1 0.6177 -3.4575 -4.1386 29 1 0.6403 -5.0803 -3.4078 30 1 4.2459 -4.2906 -7.2031 31 1 4.3261 -6.7032 -6.1716 32 1 3.3965 -7.7130 -3.9007 33 1 2.3503 -6.6778 -2.8995 34 1 1.6680 -4.5371 0.9996 35 1 2.5984 -3.1731 1.8215 36 1 0.4325 -1.8935 2.1511 37 1 -0.4986 -3.2569 1.3293 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261657935.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:00 Heat of formation + Delta-G solvation = -80.516509 kcal Electronic energy + Delta-G solvation = -24679.290104 eV Core-core repulsion = 20555.371479 eV Total energy + Delta-G solvation = -4123.918626 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.087 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.29036 -48.82165 -48.77104 -43.19955 -38.39689 -35.72224 -33.97242 -32.93091 -30.28110 -29.47766 -27.98584 -27.25732 -24.90474 -22.89749 -22.52295 -21.51873 -20.94814 -19.75441 -19.66523 -19.17746 -18.20379 -17.71239 -16.83833 -16.61494 -16.12601 -16.08045 -15.65215 -15.62351 -15.44806 -15.18762 -15.05562 -14.98199 -14.91589 -14.88670 -14.50869 -14.23356 -14.02331 -13.82341 -13.50937 -13.37346 -13.08289 -12.94409 -12.82317 -12.34191 -11.99946 -11.52557 -11.09253 -11.06112 -10.90782 -10.71320 -10.44238 -9.84228 -9.37419 -8.45349 -8.09823 -6.18833 0.28763 1.03853 1.38122 1.40607 1.44142 1.51707 1.68810 1.81985 2.22303 2.45250 2.58096 2.77005 2.99913 3.19802 3.24267 3.56527 3.60767 3.68046 4.03374 4.11852 4.21983 4.34330 4.43832 4.51999 4.63380 4.66969 4.70584 4.96957 5.03389 5.09016 5.26851 5.62203 5.66189 5.72218 5.80001 5.90466 6.40433 6.85155 7.01683 7.49331 8.98366 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.017786 B = 0.003736 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.877386 B = 7491.893216 C = 8483.183118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.031 3.969 3 Si 0.938 3.062 4 H -0.282 1.282 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.494 4.494 8 H 0.045 0.955 9 C 0.024 3.976 10 C -0.020 4.020 11 S -0.240 6.240 12 C -0.016 4.016 13 C 0.220 3.780 14 N -0.511 5.511 15 C -0.048 4.048 16 C -0.024 4.024 17 N -0.456 5.456 18 C 0.060 3.940 19 C 0.442 3.558 20 F -0.180 7.180 21 F -0.169 7.169 22 F -0.189 7.189 23 C -0.179 4.179 24 C -0.150 4.150 25 H 0.259 0.741 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.112 0.888 30 H 0.194 0.806 31 H 0.226 0.774 32 H 0.184 0.816 33 H 0.147 0.853 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.714 -19.850 -9.670 22.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.169 4.169 3 Si 0.764 3.236 4 H -0.208 1.208 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.532 4.532 8 H 0.063 0.937 9 C 0.023 3.977 10 C -0.168 4.168 11 S -0.013 6.013 12 C -0.165 4.165 13 C -0.042 4.042 14 N -0.230 5.230 15 C -0.194 4.194 16 C -0.155 4.155 17 N -0.141 5.141 18 C -0.064 4.064 19 C 0.387 3.613 20 F -0.161 7.161 21 F -0.151 7.151 22 F -0.171 7.171 23 C -0.216 4.216 24 C -0.190 4.190 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.130 0.870 30 H 0.211 0.789 31 H 0.242 0.758 32 H 0.201 0.799 33 H 0.165 0.835 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.387 -18.917 -9.660 21.913 hybrid contribution -1.268 0.396 -0.120 1.334 sum 4.119 -18.521 -9.780 21.346 Atomic orbital electron populations 1.70082 1.06722 1.27249 1.50236 1.25509 0.95467 1.01410 0.94553 0.85875 0.79117 0.80618 0.77949 1.20841 1.20694 1.19529 1.20549 0.92377 0.90262 1.49988 0.93659 1.18535 0.99462 0.94098 0.85622 1.22887 0.95641 1.00539 0.97757 1.87074 1.17815 1.81138 1.15231 1.21622 0.96450 1.04226 0.94204 1.22118 1.00737 0.82495 0.98814 1.70255 1.12617 1.32929 1.07219 1.22882 1.01532 0.91704 1.03331 1.23450 0.98549 1.02175 0.91357 1.45121 1.33093 1.09768 1.26103 1.23365 0.97612 0.89062 0.96403 1.20974 0.85984 0.78194 0.76144 1.93217 1.94141 1.89511 1.39264 1.93243 1.94493 1.56068 1.71282 1.93189 1.58105 1.69546 1.96242 1.23013 0.97284 0.96715 1.04613 1.22505 0.93664 1.01157 1.01630 0.93202 0.92731 0.90905 0.88783 0.87035 0.78910 0.75762 0.79858 0.83531 0.88511 0.90631 0.92077 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.17 12.90 21.45 0.28 -50.90 16 2 C 0.03 1.70 5.39 84.65 0.46 2.16 16 3 Si 0.94 44.32 29.55 68.60 2.03 46.34 16 4 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 7 C -0.49 -26.84 8.49 25.60 0.22 -26.63 16 8 H 0.05 2.55 7.82 -2.91 -0.02 2.53 16 9 C 0.02 1.16 1.34 -52.93 -0.07 1.09 16 10 C -0.02 -0.84 5.80 71.98 0.42 -0.42 16 11 S -0.24 -9.22 21.41 -56.49 -1.21 -10.43 16 12 C -0.02 -0.50 5.98 71.24 0.43 -0.07 16 13 C 0.22 6.49 6.81 138.13 0.94 7.43 16 14 N -0.51 -16.84 11.25 -188.12 -2.12 -18.95 16 15 C -0.05 -1.15 11.87 83.52 0.99 -0.16 16 16 C -0.02 -0.42 11.58 83.08 0.96 0.55 16 17 N -0.46 -9.41 2.64 -514.28 -1.36 -10.77 16 18 C 0.06 0.78 5.70 86.38 0.49 1.28 16 19 C 0.44 7.04 3.29 71.98 0.24 7.27 16 20 F -0.18 -3.06 17.24 44.97 0.78 -2.29 16 21 F -0.17 -2.58 17.32 44.97 0.78 -1.80 16 22 F -0.19 -4.07 14.74 44.97 0.66 -3.40 16 23 C -0.18 -7.23 9.96 30.62 0.30 -6.93 16 24 C -0.15 -6.65 9.40 30.62 0.29 -6.36 16 25 H 0.26 14.11 8.32 -92.70 -0.77 13.34 16 26 H 0.05 2.65 8.14 -2.39 -0.02 2.63 16 27 H 0.07 2.68 8.09 -2.39 -0.02 2.66 16 28 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 29 H 0.11 2.94 5.72 -2.39 -0.01 2.93 16 30 H 0.19 3.49 8.06 -2.91 -0.02 3.46 16 31 H 0.23 1.66 8.06 -2.91 -0.02 1.64 16 32 H 0.18 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.15 1.93 7.91 -2.39 -0.02 1.91 16 34 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 35 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 36 H 0.06 2.97 8.14 -2.38 -0.02 2.95 16 37 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -68.77 344.92 6.59 -62.18 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 1.09 Total: 10.82 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: 5.66 Total: -20.80 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -3.20 Total: -80.62 kcal Atomic # 9 Polarization: -9.70 SS G_CDS: 2.22 Total: -7.49 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: -9.22 SS G_CDS: -1.21 Total: -10.43 kcal Total: -68.77 6.59 -62.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261657935.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.333 kcal (2) G-P(sol) polarization free energy of solvation -68.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds