Wall clock time and date at job start Tue Mar 31 2020 13:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50707 * 109.46779 * 2 1 4 4 N 1.33695 * 126.27314 * 270.34462 * 3 2 1 5 5 C 1.30612 * 108.99509 * 180.13241 * 4 3 2 6 6 O 1.33676 * 109.15598 * 359.56920 * 5 4 3 7 7 C 1.35336 * 107.68431 * 0.26492 * 6 5 4 8 8 C 1.46696 * 126.64494 * 180.02562 * 7 6 5 9 9 O 1.21703 * 120.00499 * 180.02562 * 8 7 6 10 10 N 1.34780 * 119.99810 * 0.02562 * 8 7 6 11 11 C 1.40000 * 119.99997 * 175.62152 * 10 8 7 12 12 C 1.38723 * 120.07971 * 34.61461 * 11 10 8 13 13 C 1.38185 * 120.01916 * 179.74627 * 12 11 10 14 14 C 1.38550 * 120.17755 * 0.55165 * 13 12 11 15 15 F 1.35100 * 119.92044 * 179.72199 * 14 13 12 16 16 C 1.38347 * 120.15913 * 359.70108 * 14 13 12 17 17 C 1.38737 * 119.98017 * 0.02562 * 16 14 13 18 18 O 1.35765 * 120.09268 * 179.97438 * 17 16 14 19 19 C 1.34814 * 116.99929 * 5.42437 * 18 17 16 20 20 H 1.07994 * 119.99511 * 354.95242 * 19 18 17 21 21 C 1.38632 * 120.00228 * 174.95466 * 19 18 17 22 22 N 1.31575 * 119.99564 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00075 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47325 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47312 * 120.00252 * 23 21 19 26 26 H 1.48503 * 109.47068 * 240.00034 * 23 21 19 27 27 H 1.08999 * 109.47121 * 299.99919 * 1 2 3 28 28 H 1.08997 * 109.46919 * 60.00642 * 1 2 3 29 29 H 1.09004 * 109.46887 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47121 * 240.00081 * 2 1 3 31 31 H 1.08997 * 109.46919 * 119.99358 * 2 1 3 32 32 H 1.07999 * 125.42222 * 179.82991 * 5 4 3 33 33 H 0.97000 * 120.00158 * 355.61885 * 10 8 7 34 34 H 1.08003 * 119.99212 * 359.97438 * 12 11 10 35 35 H 1.08004 * 119.90816 * 180.26770 * 13 12 11 36 36 H 1.08003 * 120.01274 * 180.02562 * 16 14 13 37 37 H 0.97004 * 119.99247 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2898 2.1688 -1.0778 5 6 2.7104 3.3430 -0.6899 6 8 2.7254 3.3842 0.6461 7 6 2.3012 2.1816 1.0993 8 6 2.1578 1.7752 2.5015 9 8 1.7636 0.6564 2.7737 10 7 2.4625 2.6410 3.4885 11 6 2.2392 2.2864 4.8243 12 6 2.4080 0.9713 5.2322 13 6 2.1923 0.6237 6.5521 14 6 1.7963 1.5837 7.4693 15 9 1.5814 1.2370 8.7573 16 6 1.6207 2.8964 7.0695 17 6 1.8408 3.2538 5.7472 18 8 1.6687 4.5412 5.3522 19 6 1.3926 5.4448 6.3140 20 1 1.2370 5.1193 7.3319 21 6 1.3085 6.7916 5.9963 22 7 1.4976 7.1879 4.7560 23 14 0.9268 8.0435 7.3290 24 1 0.7579 7.3464 8.6293 25 1 2.0446 9.0159 7.4296 26 1 -0.3263 8.7635 6.9875 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 2.9961 4.1532 -1.3444 33 1 2.8366 3.5097 3.2733 34 1 2.7117 0.2195 4.5187 35 1 2.3285 -0.3999 6.8686 36 1 1.3122 3.6429 7.7866 37 1 1.4391 8.1303 4.5338 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001435540964.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:07 Heat of formation + Delta-G solvation = -57.860750 kcal Electronic energy + Delta-G solvation = -26317.301644 eV Core-core repulsion = 22170.009010 eV Total energy + Delta-G solvation = -4147.292634 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.100 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.33295 -43.46654 -40.15133 -38.64618 -36.47773 -35.75736 -34.16725 -32.96064 -32.48742 -30.15948 -29.43463 -28.22961 -25.61594 -24.68330 -23.63483 -22.60982 -21.88502 -20.99474 -20.28998 -18.43855 -18.38050 -17.60515 -16.89761 -16.74262 -16.53726 -15.44826 -15.32052 -15.08618 -14.86905 -14.67347 -14.39042 -14.24729 -14.00352 -13.69637 -13.60339 -13.43828 -13.24864 -12.71919 -12.46010 -12.28290 -11.74151 -11.55643 -11.46155 -11.15884 -11.07411 -11.06322 -10.90711 -10.76737 -10.56801 -9.99048 -9.86544 -9.59814 -9.03890 -8.99426 -7.99259 -7.25069 -6.67156 -4.25643 0.78476 1.75455 2.02884 2.39702 2.48681 3.01621 3.03915 3.09514 3.15534 3.37417 3.79368 3.96511 4.23698 4.62825 4.75106 4.78812 4.89100 5.02366 5.25848 5.33444 5.39532 5.49134 5.50723 5.66450 5.69866 5.90858 5.93505 6.03503 6.08900 6.19556 6.29917 6.43341 6.64928 6.81808 6.83353 6.88513 7.10209 7.43847 7.53146 7.70757 7.76444 8.22564 8.78174 9.37579 10.49412 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.010941 B = 0.004494 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.471723 B = 6229.290068 C = 8373.998641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.050 4.050 3 C 0.078 3.922 4 N -0.495 5.495 5 C 0.200 3.800 6 O -0.184 6.184 7 C -0.103 4.103 8 C 0.603 3.397 9 O -0.509 6.509 10 N -0.632 5.632 11 C 0.050 3.950 12 C -0.045 4.045 13 C -0.231 4.231 14 C 0.136 3.864 15 F -0.150 7.150 16 C -0.259 4.259 17 C 0.162 3.838 18 O -0.165 6.165 19 C -0.394 4.394 20 H 0.096 0.904 21 C 0.044 3.956 22 N -0.856 5.856 23 Si 0.944 3.056 24 H -0.265 1.265 25 H -0.274 1.274 26 H -0.274 1.274 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.256 0.744 33 H 0.419 0.581 34 H 0.143 0.857 35 H 0.125 0.875 36 H 0.144 0.856 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.506 -7.531 -7.136 10.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.088 4.088 3 C -0.046 4.046 4 N -0.224 5.224 5 C -0.025 4.025 6 O -0.069 6.069 7 C -0.159 4.159 8 C 0.389 3.611 9 O -0.387 6.387 10 N -0.275 5.275 11 C -0.044 4.044 12 C -0.065 4.065 13 C -0.251 4.251 14 C 0.116 3.884 15 F -0.129 7.129 16 C -0.280 4.280 17 C 0.106 3.894 18 O -0.068 6.068 19 C -0.470 4.470 20 H 0.114 0.886 21 C -0.162 4.162 22 N -0.489 5.489 23 Si 0.768 3.232 24 H -0.189 1.189 25 H -0.199 1.199 26 H -0.200 1.200 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.119 0.881 32 H 0.271 0.729 33 H 0.256 0.744 34 H 0.160 0.840 35 H 0.143 0.857 36 H 0.162 0.838 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.170 -8.052 -7.866 11.464 hybrid contribution 0.020 1.620 1.335 2.099 sum 2.190 -6.432 -6.532 9.425 Atomic orbital electron populations 1.21645 0.93844 1.02167 1.02169 1.20145 0.96652 0.87727 1.04233 1.22022 0.98114 0.98200 0.86272 1.70325 1.17284 1.03350 1.31422 1.28319 0.97138 0.97513 0.79556 1.84570 1.64232 1.33760 1.24328 1.22892 1.11782 0.85096 0.96115 1.16314 0.78336 0.85134 0.81305 1.90813 1.47185 1.19300 1.81442 1.42958 1.60937 1.19705 1.03924 1.16819 1.11850 0.93286 0.82479 1.20646 0.96859 0.94054 0.94947 1.20479 1.12566 0.99001 0.93062 1.17481 0.99721 0.93215 0.77974 1.91421 1.92559 1.92870 1.36001 1.20862 1.14213 0.95660 0.97243 1.18802 0.93168 0.86414 0.91062 1.83937 1.75450 1.11553 1.35810 1.21431 1.49737 0.85899 0.89907 0.88616 1.25318 0.96247 0.96822 0.97806 1.70031 1.44435 1.17021 1.17447 0.85597 0.78488 0.79624 0.79512 1.18876 1.19936 1.19978 0.92153 0.92820 0.91766 0.90251 0.88119 0.72882 0.74352 0.83954 0.85720 0.83805 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.89 37.16 0.37 -1.31 16 2 C -0.05 -0.62 5.93 -27.88 -0.17 -0.79 16 3 C 0.08 1.13 6.41 -82.46 -0.53 0.60 16 4 N -0.49 -6.67 11.26 -10.88 -0.12 -6.79 16 5 C 0.20 2.25 13.21 52.24 0.69 2.94 16 6 O -0.18 -2.64 10.58 4.42 0.05 -2.60 16 7 C -0.10 -1.63 7.18 -36.85 -0.26 -1.89 16 8 C 0.60 10.53 7.63 -12.84 -0.10 10.43 16 9 O -0.51 -9.21 12.20 5.19 0.06 -9.15 16 10 N -0.63 -11.79 5.18 -10.89 -0.06 -11.85 16 11 C 0.05 1.00 6.33 -83.48 -0.53 0.47 16 12 C -0.04 -0.82 8.69 -39.42 -0.34 -1.16 16 13 C -0.23 -4.08 10.02 -39.49 -0.40 -4.48 16 14 C 0.14 2.62 7.29 -39.43 -0.29 2.33 16 15 F -0.15 -2.77 17.26 2.25 0.04 -2.73 16 16 C -0.26 -5.49 9.14 -39.36 -0.36 -5.85 16 17 C 0.16 3.66 6.67 -38.93 -0.26 3.40 16 18 O -0.17 -4.26 9.32 0.05 0.00 -4.26 16 19 C -0.39 -10.22 9.49 30.88 0.29 -9.92 16 20 H 0.10 2.33 5.20 -52.49 -0.27 2.05 16 21 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 22 N -0.86 -23.11 13.67 55.48 0.76 -22.35 16 23 Si 0.94 19.36 29.55 -169.99 -5.02 14.34 16 24 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 25 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 26 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.10 1.32 6.47 -51.93 -0.34 0.98 16 32 H 0.26 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.42 7.78 8.37 -40.82 -0.34 7.44 16 34 H 0.14 2.44 6.19 -52.48 -0.32 2.12 16 35 H 0.12 1.88 8.06 -52.48 -0.42 1.46 16 36 H 0.14 3.05 5.64 -52.48 -0.30 2.76 16 37 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 332.57 15.07 5.01 5.01 Total: -1.00 -29.72 332.57 -4.50 -34.22 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -3.24 Total: 10.38 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -1.98 Total: -4.22 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.58 Total: -40.99 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.11 Total: -16.00 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.04 Total: -2.73 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.72 -4.50 -34.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435540964.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.644 kcal (2) G-P(sol) polarization free energy of solvation -29.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds