Wall clock time and date at job start Tue Mar 31 2020 13:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50707 * 109.46779 * 2 1 4 4 N 1.33695 * 126.27314 * 270.34462 * 3 2 1 5 5 C 1.30612 * 108.99509 * 180.13241 * 4 3 2 6 6 O 1.33676 * 109.15598 * 359.56920 * 5 4 3 7 7 C 1.35336 * 107.68431 * 0.26492 * 6 5 4 8 8 C 1.46696 * 126.64494 * 180.02562 * 7 6 5 9 9 O 1.21703 * 120.00499 * 180.02562 * 8 7 6 10 10 N 1.34780 * 119.99810 * 0.02562 * 8 7 6 11 11 C 1.40000 * 119.99997 * 175.62152 * 10 8 7 12 12 C 1.38723 * 120.07971 * 34.61461 * 11 10 8 13 13 C 1.38185 * 120.01916 * 179.74627 * 12 11 10 14 14 C 1.38550 * 120.17755 * 0.55165 * 13 12 11 15 15 F 1.35100 * 119.92044 * 179.72199 * 14 13 12 16 16 C 1.38347 * 120.15913 * 359.70108 * 14 13 12 17 17 C 1.38737 * 119.98017 * 0.02562 * 16 14 13 18 18 O 1.35765 * 120.09268 * 179.97438 * 17 16 14 19 19 C 1.34814 * 116.99929 * 5.42437 * 18 17 16 20 20 H 1.07994 * 119.99511 * 354.95242 * 19 18 17 21 21 C 1.38632 * 120.00228 * 174.95466 * 19 18 17 22 22 N 1.31575 * 119.99564 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00075 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47325 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47312 * 120.00252 * 23 21 19 26 26 H 1.48503 * 109.47068 * 240.00034 * 23 21 19 27 27 H 1.08999 * 109.47121 * 299.99919 * 1 2 3 28 28 H 1.08997 * 109.46919 * 60.00642 * 1 2 3 29 29 H 1.09004 * 109.46887 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47121 * 240.00081 * 2 1 3 31 31 H 1.08997 * 109.46919 * 119.99358 * 2 1 3 32 32 H 1.07999 * 125.42222 * 179.82991 * 5 4 3 33 33 H 0.97000 * 120.00158 * 355.61885 * 10 8 7 34 34 H 1.08003 * 119.99212 * 359.97438 * 12 11 10 35 35 H 1.08004 * 119.90816 * 180.26770 * 13 12 11 36 36 H 1.08003 * 120.01274 * 180.02562 * 16 14 13 37 37 H 0.97004 * 119.99247 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2898 2.1688 -1.0778 5 6 2.7104 3.3430 -0.6899 6 8 2.7254 3.3842 0.6461 7 6 2.3012 2.1816 1.0993 8 6 2.1578 1.7752 2.5015 9 8 1.7636 0.6564 2.7737 10 7 2.4625 2.6410 3.4885 11 6 2.2392 2.2864 4.8243 12 6 2.4080 0.9713 5.2322 13 6 2.1923 0.6237 6.5521 14 6 1.7963 1.5837 7.4693 15 9 1.5814 1.2370 8.7573 16 6 1.6207 2.8964 7.0695 17 6 1.8408 3.2538 5.7472 18 8 1.6687 4.5412 5.3522 19 6 1.3926 5.4448 6.3140 20 1 1.2370 5.1193 7.3319 21 6 1.3085 6.7916 5.9963 22 7 1.4976 7.1879 4.7560 23 14 0.9268 8.0435 7.3290 24 1 0.7579 7.3464 8.6293 25 1 2.0446 9.0159 7.4296 26 1 -0.3263 8.7635 6.9875 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 2.9961 4.1532 -1.3444 33 1 2.8366 3.5097 3.2733 34 1 2.7117 0.2195 4.5187 35 1 2.3285 -0.3999 6.8686 36 1 1.3122 3.6429 7.7866 37 1 1.4391 8.1303 4.5338 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001435540964.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:06 Heat of formation + Delta-G solvation = -78.574934 kcal Electronic energy + Delta-G solvation = -26318.199879 eV Core-core repulsion = 22170.009010 eV Total energy + Delta-G solvation = -4148.190869 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.100 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.85904 -44.53721 -41.66909 -40.22941 -38.09958 -36.87859 -35.60412 -34.34645 -33.98595 -31.47639 -30.96319 -29.67478 -27.45403 -25.86221 -24.68009 -24.10713 -23.36484 -22.24536 -21.56706 -20.19416 -19.80462 -19.12692 -18.28731 -17.98023 -17.62916 -17.07525 -16.92018 -16.61111 -16.08705 -15.98522 -15.91244 -15.68593 -15.41281 -15.29180 -15.02228 -14.88403 -14.38383 -14.08688 -13.84842 -13.72821 -13.46906 -13.08143 -12.63976 -12.52486 -12.40860 -12.19350 -12.13904 -12.08288 -11.96313 -11.68606 -11.32421 -11.09238 -10.86308 -10.12094 -9.61085 -8.86569 -8.53919 -6.21060 -0.38780 0.21275 0.42714 1.32831 1.36140 1.40295 1.42066 1.52576 1.85104 2.02378 2.13390 2.61767 3.01672 3.06820 3.12578 3.40915 3.55316 3.60622 3.91044 4.14240 4.25418 4.29053 4.31110 4.39284 4.46525 4.52317 4.77284 4.87693 4.97300 4.99274 5.09337 5.18518 5.21174 5.25315 5.30250 5.31569 5.42183 5.89810 5.96090 6.17331 6.48561 6.79411 6.90511 7.57772 8.66660 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.010941 B = 0.004494 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.471723 B = 6229.290068 C = 8373.998641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.051 4.051 3 C 0.089 3.911 4 N -0.516 5.516 5 C 0.227 3.773 6 O -0.199 6.199 7 C -0.140 4.140 8 C 0.606 3.394 9 O -0.519 6.519 10 N -0.640 5.640 11 C 0.051 3.949 12 C -0.044 4.044 13 C -0.203 4.203 14 C 0.130 3.870 15 F -0.143 7.143 16 C -0.265 4.265 17 C 0.135 3.865 18 O -0.203 6.203 19 C -0.417 4.417 20 H 0.102 0.898 21 C -0.009 4.009 22 N -0.905 5.905 23 Si 1.013 2.987 24 H -0.255 1.255 25 H -0.267 1.267 26 H -0.270 1.270 27 H 0.035 0.965 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.307 0.693 33 H 0.417 0.583 34 H 0.160 0.840 35 H 0.163 0.837 36 H 0.137 0.863 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.761 -8.840 -7.577 11.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.089 4.089 3 C -0.035 4.035 4 N -0.245 5.245 5 C 0.003 3.997 6 O -0.085 6.085 7 C -0.195 4.195 8 C 0.394 3.606 9 O -0.398 6.398 10 N -0.283 5.283 11 C -0.044 4.044 12 C -0.064 4.064 13 C -0.222 4.222 14 C 0.110 3.890 15 F -0.121 7.121 16 C -0.286 4.286 17 C 0.081 3.919 18 O -0.108 6.108 19 C -0.493 4.493 20 H 0.119 0.881 21 C -0.209 4.209 22 N -0.541 5.541 23 Si 0.833 3.167 24 H -0.179 1.179 25 H -0.191 1.191 26 H -0.195 1.195 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.322 0.678 33 H 0.253 0.747 34 H 0.177 0.823 35 H 0.181 0.819 36 H 0.155 0.845 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.427 -9.427 -8.305 12.795 hybrid contribution 0.002 1.767 1.344 2.220 sum 2.428 -7.660 -6.961 10.631 Atomic orbital electron populations 1.21605 0.93361 1.03276 1.01042 1.20244 0.96946 0.86854 1.04864 1.22381 0.96214 0.98768 0.86132 1.70398 1.18808 1.04250 1.31000 1.29622 0.93432 0.97850 0.78781 1.84573 1.64724 1.33419 1.25833 1.22547 1.15191 0.86309 0.95443 1.16491 0.77498 0.84728 0.81867 1.90777 1.47539 1.19535 1.81990 1.43022 1.61569 1.19937 1.03734 1.17123 1.10610 0.93600 0.83021 1.20902 0.96435 0.93403 0.95651 1.20908 1.08929 1.00287 0.92104 1.17486 1.00131 0.92724 0.78625 1.91440 1.92513 1.92665 1.35512 1.20930 1.14162 0.96691 0.96778 1.19193 0.94310 0.86106 0.92295 1.83922 1.77927 1.12660 1.36292 1.21822 1.50397 0.86643 0.90411 0.88118 1.26423 0.95889 0.98442 1.00124 1.70143 1.46891 1.17525 1.19552 0.84594 0.78421 0.76868 0.76821 1.17874 1.19149 1.19471 0.94592 0.92514 0.89589 0.88218 0.88798 0.67790 0.74701 0.82303 0.81940 0.84535 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.89 71.98 0.71 -2.35 16 2 C -0.05 -1.22 5.93 29.85 0.18 -1.04 16 3 C 0.09 2.48 6.41 41.84 0.27 2.75 16 4 N -0.52 -12.92 11.26 -303.10 -3.41 -16.33 16 5 C 0.23 4.61 13.21 130.42 1.72 6.33 16 6 O -0.20 -5.63 10.58 -7.11 -0.08 -5.70 16 7 C -0.14 -4.40 7.18 24.04 0.17 -4.22 16 8 C 0.61 21.39 7.63 86.45 0.66 22.05 16 9 O -0.52 -18.63 12.20 -4.36 -0.05 -18.68 16 10 N -0.64 -24.55 5.18 -306.58 -1.59 -26.14 16 11 C 0.05 2.08 6.33 38.26 0.24 2.32 16 12 C -0.04 -1.54 8.69 22.37 0.19 -1.35 16 13 C -0.20 -6.62 10.02 22.33 0.22 -6.40 16 14 C 0.13 4.83 7.29 22.37 0.16 4.99 16 15 F -0.14 -5.00 17.26 44.97 0.78 -4.22 16 16 C -0.26 -11.38 9.14 22.42 0.20 -11.17 16 17 C 0.13 6.27 6.67 22.69 0.15 6.43 16 18 O -0.20 -11.02 9.32 -22.75 -0.21 -11.23 16 19 C -0.42 -22.55 9.49 67.91 0.64 -21.90 16 20 H 0.10 5.09 5.20 -2.91 -0.02 5.08 16 21 C -0.01 -0.47 5.49 84.83 0.47 -0.01 16 22 N -0.90 -50.88 13.67 21.61 0.30 -50.58 16 23 Si 1.01 40.43 29.55 68.60 2.03 42.45 16 24 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 25 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 26 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 27 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.09 2.37 6.47 -2.39 -0.02 2.35 16 32 H 0.31 2.23 8.06 -2.91 -0.02 2.21 16 33 H 0.42 16.32 8.37 -92.71 -0.78 15.54 16 34 H 0.16 5.12 6.19 -2.91 -0.02 5.10 16 35 H 0.16 4.14 8.06 -2.91 -0.02 4.12 16 36 H 0.14 5.97 5.64 -2.91 -0.02 5.95 16 37 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -66.85 332.57 4.14 -62.71 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 0.38 Total: 31.29 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 6.00 Total: -3.57 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -4.70 Total: -93.05 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.34 Total: -35.61 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.78 Total: -4.22 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.45 kcal Total: -66.85 4.14 -62.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435540964.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.868 kcal (2) G-P(sol) polarization free energy of solvation -66.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds