Wall clock time and date at job start Tue Mar 31 2020 13:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.27574 * 126.41261 * 2 1 4 4 N 1.39149 * 113.16000 * 180.21327 * 3 2 1 5 5 C 1.40117 * 124.43609 * 179.81158 * 4 3 2 6 6 C 1.39076 * 119.95684 * 179.69556 * 5 4 3 7 7 C 1.38105 * 120.27910 * 180.02562 * 6 5 4 8 8 C 1.38341 * 120.20061 * 0.04611 * 7 6 5 9 9 F 1.35101 * 120.03871 * 180.02562 * 8 7 6 10 10 C 1.39875 * 119.91660 * 359.97438 * 8 7 6 11 11 C 1.47579 * 120.13732 * 180.02562 * 10 8 7 12 12 O 1.21493 * 119.99815 * 359.97438 * 11 10 8 13 13 O 1.34728 * 120.00081 * 180.27682 * 11 10 8 14 14 C 1.38479 * 119.96556 * 0.02562 * 5 4 3 15 15 C 1.34953 * 111.12589 * 359.54168 * 4 3 2 16 16 O 1.21294 * 127.50278 * 180.24854 * 15 4 3 17 17 C 1.51431 * 126.41973 * 179.74259 * 2 1 3 18 18 H 1.08997 * 110.74483 * 61.37723 * 17 2 1 19 19 C 1.53002 * 110.60847 * 298.47475 * 17 2 1 20 20 C 1.50693 * 109.47469 * 179.42032 * 19 17 2 21 21 H 1.08003 * 120.00038 * 359.97438 * 20 19 17 22 22 C 1.37883 * 119.99770 * 179.97438 * 20 19 17 23 23 N 1.31505 * 120.00489 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99656 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47345 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47167 * 120.00030 * 24 22 20 27 27 H 1.48499 * 109.46851 * 239.99959 * 24 22 20 28 28 H 1.09000 * 109.46992 * 270.26045 * 1 2 3 29 29 H 1.08996 * 109.47732 * 30.26175 * 1 2 3 30 30 H 1.09003 * 109.46868 * 150.26114 * 1 2 3 31 31 H 1.07998 * 119.86155 * 0.02562 * 6 5 4 32 32 H 1.07998 * 119.89789 * 180.02562 * 7 6 5 33 33 H 0.96701 * 117.00313 * 179.72295 * 13 11 10 34 34 H 1.08008 * 120.09835 * 359.97357 * 14 5 4 35 35 H 1.09005 * 109.46858 * 299.42235 * 19 17 2 36 36 H 1.08999 * 109.47324 * 59.41500 * 19 17 2 37 37 H 0.96996 * 120.00250 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0267 0.0000 4 7 3.6187 0.7077 -0.0048 5 6 4.6548 1.6509 -0.0096 6 6 5.9795 1.2273 -0.0077 7 6 7.0060 2.1513 -0.0119 8 6 6.7234 3.5055 -0.0170 9 9 7.7301 4.4065 -0.0216 10 6 5.3940 3.9407 -0.0185 11 6 5.0869 5.3841 -0.0245 12 8 5.9897 6.1972 -0.0277 13 8 3.8056 5.8003 -0.0203 14 6 4.3587 3.0037 -0.0093 15 6 3.8036 -0.6291 0.0018 16 8 4.8579 -1.2287 0.0042 17 6 2.4060 -1.2185 0.0055 18 1 2.2423 -1.8231 -0.8866 19 6 2.1763 -2.0516 1.2681 20 6 3.0720 -3.2631 1.2405 21 1 3.7383 -3.4232 0.4056 22 6 3.0410 -4.1672 2.2811 23 7 2.2295 -3.9726 3.2974 24 14 4.1519 -5.6687 2.2472 25 1 4.9628 -5.6565 1.0032 26 1 5.0537 -5.6440 3.4268 27 1 3.3218 -6.8994 2.2843 28 1 -0.3633 0.0047 1.0277 29 1 -0.3634 0.8876 -0.5179 30 1 -0.3633 -0.8924 -0.5098 31 1 6.2065 0.1715 -0.0030 32 1 8.0325 1.8155 -0.0109 33 1 3.6541 6.7554 -0.0204 34 1 3.3301 3.3330 -0.0058 35 1 2.4062 -1.4497 2.1473 36 1 1.1348 -2.3706 1.3085 37 1 2.2080 -4.6084 4.0296 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604616420.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:51 Heat of formation + Delta-G solvation = -84.485749 kcal Electronic energy + Delta-G solvation = -26180.785566 eV Core-core repulsion = 22032.338385 eV Total energy + Delta-G solvation = -4148.447181 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.100 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -48.97253 -41.48618 -40.37070 -38.65394 -37.27444 -36.26186 -34.43501 -33.01961 -31.79092 -30.62811 -30.25032 -27.71127 -26.13846 -25.06219 -23.11422 -22.91205 -21.46705 -20.27068 -19.49267 -18.36594 -17.92700 -17.59060 -16.58140 -16.26618 -16.17054 -16.03120 -15.77098 -15.29245 -14.92885 -14.60856 -14.41746 -14.16044 -13.75567 -13.49707 -13.42355 -13.21154 -12.97815 -12.88760 -12.42521 -12.36640 -11.83210 -11.80543 -11.67352 -11.57644 -11.49474 -11.03035 -10.82899 -10.72372 -10.41189 -9.86548 -9.64116 -9.50106 -9.44294 -8.99071 -8.49861 -7.87340 -6.14789 -4.17286 0.34984 0.90217 1.84426 2.24945 2.32245 2.72343 2.87754 3.26431 3.34724 3.41219 3.56120 3.98637 4.02662 4.31620 4.43717 4.55699 4.71097 4.89174 5.03114 5.13779 5.22413 5.25427 5.56932 5.59525 5.64540 5.72290 5.78570 5.85579 5.97781 6.07753 6.13290 6.20983 6.28406 6.47266 6.76130 7.24831 7.28115 7.65961 7.78238 7.83768 8.10543 8.13769 8.88669 9.48618 10.96294 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.017222 B = 0.003518 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.397862 B = 7957.697736 C = 9148.705132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.126 3.874 3 N -0.263 5.263 4 N -0.427 5.427 5 C 0.167 3.833 6 C -0.091 4.091 7 C -0.135 4.135 8 C 0.134 3.866 9 F -0.118 7.118 10 C -0.147 4.147 11 C 0.532 3.468 12 O -0.504 6.504 13 O -0.507 6.507 14 C -0.055 4.055 15 C 0.512 3.488 16 O -0.462 6.462 17 C -0.130 4.130 18 H 0.131 0.869 19 C 0.053 3.947 20 C -0.521 4.521 21 H 0.067 0.933 22 C 0.061 3.939 23 N -0.895 5.895 24 Si 0.895 3.105 25 H -0.270 1.270 26 H -0.284 1.284 27 H -0.283 1.283 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.171 0.829 32 H 0.153 0.847 33 H 0.415 0.585 34 H 0.160 0.840 35 H 0.021 0.979 36 H 0.043 0.957 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.270 14.126 -7.838 16.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.066 4.066 3 N -0.069 5.069 4 N -0.236 5.236 5 C 0.073 3.927 6 C -0.112 4.112 7 C -0.154 4.154 8 C 0.113 3.887 9 F -0.096 7.096 10 C -0.149 4.149 11 C 0.376 3.624 12 O -0.393 6.393 13 O -0.319 6.319 14 C -0.076 4.076 15 C 0.302 3.698 16 O -0.331 6.331 17 C -0.154 4.154 18 H 0.148 0.852 19 C 0.015 3.985 20 C -0.559 4.559 21 H 0.086 0.914 22 C -0.140 4.140 23 N -0.534 5.534 24 Si 0.723 3.277 25 H -0.195 1.195 26 H -0.210 1.210 27 H -0.210 1.210 28 H 0.113 0.887 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.189 0.811 32 H 0.170 0.830 33 H 0.274 0.726 34 H 0.177 0.823 35 H 0.040 0.960 36 H 0.061 0.939 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.206 14.531 -7.680 16.437 hybrid contribution 0.780 -0.794 0.215 1.133 sum 0.574 13.737 -7.465 15.645 Atomic orbital electron populations 1.20389 0.84488 1.04090 1.04555 1.25697 0.97674 0.91658 0.91563 1.74672 0.87330 1.26617 1.18240 1.47192 1.02687 1.05709 1.68020 1.17552 0.86381 0.88245 1.00555 1.21746 0.89479 1.03215 0.96753 1.20965 1.01182 0.89720 1.03538 1.17606 0.83165 0.86979 1.00919 1.91578 1.58297 1.66671 1.93103 1.18803 0.92537 0.90468 1.13129 1.20477 0.80441 0.88994 0.72527 1.90948 1.47144 1.55448 1.45746 1.84576 1.28692 1.32801 1.85800 1.21017 1.00140 0.89757 0.96699 1.21628 0.92677 0.80889 0.74648 1.90632 1.30829 1.65480 1.46135 1.22162 0.89587 0.96422 1.07224 0.85186 1.18960 0.99077 0.93398 0.87053 1.21202 1.22283 1.06080 1.06378 0.91442 1.24951 0.95535 0.98334 0.95215 1.69944 1.37576 1.36797 1.09098 0.86467 0.80585 0.82348 0.78295 1.19466 1.20986 1.20954 0.88743 0.90074 0.89070 0.81148 0.82974 0.72628 0.82261 0.96048 0.93928 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.49 36.01 0.38 -0.39 16 2 C 0.13 1.85 6.93 -78.73 -0.55 1.30 16 3 N -0.26 -4.13 11.18 35.53 0.40 -3.74 16 4 N -0.43 -7.43 3.73 -9.50 -0.04 -7.46 16 5 C 0.17 2.63 6.65 -83.67 -0.56 2.07 16 6 C -0.09 -1.35 9.34 -39.32 -0.37 -1.72 16 7 C -0.13 -1.71 10.00 -39.59 -0.40 -2.10 16 8 C 0.13 1.84 7.28 -38.93 -0.28 1.55 16 9 F -0.12 -1.73 15.54 2.25 0.03 -1.70 16 10 C -0.15 -1.99 5.88 -104.95 -0.62 -2.61 16 11 C 0.53 6.84 8.27 34.54 0.29 7.13 16 12 O -0.50 -7.73 16.12 -19.26 -0.31 -8.04 16 13 O -0.51 -4.77 12.68 -40.57 -0.51 -5.29 16 14 C -0.06 -0.76 9.18 -38.97 -0.36 -1.12 16 15 C 0.51 10.14 7.43 -10.42 -0.08 10.06 16 16 O -0.46 -10.18 13.90 5.55 0.08 -10.10 16 17 C -0.13 -2.38 3.01 -92.08 -0.28 -2.66 16 18 H 0.13 2.19 8.14 -51.93 -0.42 1.76 16 19 C 0.05 1.22 4.52 -27.89 -0.13 1.09 16 20 C -0.52 -13.75 8.36 -34.44 -0.29 -14.04 16 21 H 0.07 1.81 7.06 -52.48 -0.37 1.44 16 22 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 23 N -0.90 -25.31 13.29 55.43 0.74 -24.57 16 24 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.17 2.77 5.32 -52.49 -0.28 2.49 16 32 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.41 1.85 9.11 45.56 0.42 2.26 16 34 H 0.16 2.09 7.15 -52.48 -0.38 1.71 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 333.95 15.07 5.03 5.03 Total: -1.00 -33.17 333.95 -5.63 -38.81 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -2.70 Total: 0.70 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -3.33 Total: 0.14 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 1.10 Total: -35.77 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.75 Total: -23.42 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.03 Total: -1.70 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.17 -5.63 -38.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604616420.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.678 kcal (2) G-P(sol) polarization free energy of solvation -33.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds