Wall clock time and date at job start Tue Mar 31 2020 13:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.27574 * 126.41261 * 2 1 4 4 N 1.39149 * 113.16000 * 180.21327 * 3 2 1 5 5 C 1.40117 * 124.43609 * 179.81158 * 4 3 2 6 6 C 1.39076 * 119.95684 * 179.69556 * 5 4 3 7 7 C 1.38105 * 120.27910 * 180.02562 * 6 5 4 8 8 C 1.38341 * 120.20061 * 0.04611 * 7 6 5 9 9 F 1.35101 * 120.03871 * 180.02562 * 8 7 6 10 10 C 1.39875 * 119.91660 * 359.97438 * 8 7 6 11 11 C 1.47579 * 120.13732 * 180.02562 * 10 8 7 12 12 O 1.21493 * 119.99815 * 359.97438 * 11 10 8 13 13 O 1.34728 * 120.00081 * 180.27682 * 11 10 8 14 14 C 1.38479 * 119.96556 * 0.02562 * 5 4 3 15 15 C 1.34953 * 111.12589 * 359.54168 * 4 3 2 16 16 O 1.21294 * 127.50278 * 180.24854 * 15 4 3 17 17 C 1.51431 * 126.41973 * 179.74259 * 2 1 3 18 18 H 1.08997 * 110.74483 * 61.37723 * 17 2 1 19 19 C 1.53002 * 110.60847 * 298.47475 * 17 2 1 20 20 C 1.50693 * 109.47469 * 179.42032 * 19 17 2 21 21 H 1.08003 * 120.00038 * 359.97438 * 20 19 17 22 22 C 1.37883 * 119.99770 * 179.97438 * 20 19 17 23 23 N 1.31505 * 120.00489 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99656 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47345 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47167 * 120.00030 * 24 22 20 27 27 H 1.48499 * 109.46851 * 239.99959 * 24 22 20 28 28 H 1.09000 * 109.46992 * 270.26045 * 1 2 3 29 29 H 1.08996 * 109.47732 * 30.26175 * 1 2 3 30 30 H 1.09003 * 109.46868 * 150.26114 * 1 2 3 31 31 H 1.07998 * 119.86155 * 0.02562 * 6 5 4 32 32 H 1.07998 * 119.89789 * 180.02562 * 7 6 5 33 33 H 0.96701 * 117.00313 * 179.72295 * 13 11 10 34 34 H 1.08008 * 120.09835 * 359.97357 * 14 5 4 35 35 H 1.09005 * 109.46858 * 299.42235 * 19 17 2 36 36 H 1.08999 * 109.47324 * 59.41500 * 19 17 2 37 37 H 0.96996 * 120.00250 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0267 0.0000 4 7 3.6187 0.7077 -0.0048 5 6 4.6548 1.6509 -0.0096 6 6 5.9795 1.2273 -0.0077 7 6 7.0060 2.1513 -0.0119 8 6 6.7234 3.5055 -0.0170 9 9 7.7301 4.4065 -0.0216 10 6 5.3940 3.9407 -0.0185 11 6 5.0869 5.3841 -0.0245 12 8 5.9897 6.1972 -0.0277 13 8 3.8056 5.8003 -0.0203 14 6 4.3587 3.0037 -0.0093 15 6 3.8036 -0.6291 0.0018 16 8 4.8579 -1.2287 0.0042 17 6 2.4060 -1.2185 0.0055 18 1 2.2423 -1.8231 -0.8866 19 6 2.1763 -2.0516 1.2681 20 6 3.0720 -3.2631 1.2405 21 1 3.7383 -3.4232 0.4056 22 6 3.0410 -4.1672 2.2811 23 7 2.2295 -3.9726 3.2974 24 14 4.1519 -5.6687 2.2472 25 1 4.9628 -5.6565 1.0032 26 1 5.0537 -5.6440 3.4268 27 1 3.3218 -6.8994 2.2843 28 1 -0.3633 0.0047 1.0277 29 1 -0.3634 0.8876 -0.5179 30 1 -0.3633 -0.8924 -0.5098 31 1 6.2065 0.1715 -0.0030 32 1 8.0325 1.8155 -0.0109 33 1 3.6541 6.7554 -0.0204 34 1 3.3301 3.3330 -0.0058 35 1 2.4062 -1.4497 2.1473 36 1 1.1348 -2.3706 1.3085 37 1 2.2080 -4.6084 4.0296 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604616420.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:51 Heat of formation + Delta-G solvation = -105.766302 kcal Electronic energy + Delta-G solvation = -26181.708360 eV Core-core repulsion = 22032.338385 eV Total energy + Delta-G solvation = -4149.369975 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.100 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.10308 -42.82527 -41.38449 -39.77584 -38.74759 -37.18550 -35.96292 -34.71330 -32.89139 -32.31210 -31.30661 -28.88552 -27.80502 -26.19016 -24.71069 -24.07304 -22.75820 -21.61133 -20.75535 -19.47100 -19.02146 -18.78396 -18.35704 -17.51374 -17.37963 -17.22498 -17.08611 -16.45141 -16.34069 -16.28033 -15.74089 -15.37002 -14.97260 -14.67173 -14.51747 -14.37350 -14.25383 -14.09776 -14.00822 -13.48499 -13.28250 -13.21494 -12.87545 -12.80501 -12.75972 -12.65496 -12.55446 -12.12076 -11.87622 -11.58440 -11.34442 -10.86185 -10.66950 -10.53348 -10.46805 -9.11608 -8.22651 -6.29715 -0.75591 -0.22180 0.54867 1.05689 1.15413 1.37631 1.40940 1.52919 1.58974 1.82003 2.39733 2.40817 2.76905 2.88479 3.12165 3.13374 3.45612 3.62771 3.66796 3.92703 3.98523 4.16531 4.26461 4.54809 4.59649 4.68661 4.69269 4.83696 4.88926 4.90512 5.03630 5.17061 5.33478 5.36728 5.42335 5.45952 5.58895 5.75945 6.13145 6.49550 6.66721 6.82664 6.85034 7.38860 8.88460 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.017222 B = 0.003518 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.397862 B = 7957.697736 C = 9148.705132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.143 3.857 3 N -0.267 5.267 4 N -0.428 5.428 5 C 0.143 3.857 6 C -0.099 4.099 7 C -0.119 4.119 8 C 0.131 3.869 9 F -0.123 7.123 10 C -0.149 4.149 11 C 0.540 3.460 12 O -0.532 6.532 13 O -0.495 6.495 14 C -0.042 4.042 15 C 0.499 3.501 16 O -0.498 6.498 17 C -0.133 4.133 18 H 0.145 0.855 19 C 0.065 3.935 20 C -0.531 4.531 21 H 0.058 0.942 22 C 0.012 3.988 23 N -0.925 5.925 24 Si 0.951 3.049 25 H -0.271 1.271 26 H -0.285 1.285 27 H -0.271 1.271 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.155 0.845 32 H 0.179 0.821 33 H 0.438 0.562 34 H 0.169 0.831 35 H -0.011 1.011 36 H 0.046 0.954 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.189 15.082 -8.581 17.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.048 4.048 3 N -0.073 5.073 4 N -0.237 5.237 5 C 0.049 3.951 6 C -0.120 4.120 7 C -0.138 4.138 8 C 0.110 3.890 9 F -0.101 7.101 10 C -0.152 4.152 11 C 0.384 3.616 12 O -0.423 6.423 13 O -0.310 6.310 14 C -0.062 4.062 15 C 0.289 3.711 16 O -0.370 6.370 17 C -0.157 4.157 18 H 0.163 0.837 19 C 0.026 3.974 20 C -0.569 4.569 21 H 0.076 0.924 22 C -0.187 4.187 23 N -0.566 5.566 24 Si 0.777 3.223 25 H -0.195 1.195 26 H -0.211 1.211 27 H -0.196 1.196 28 H 0.119 0.881 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.172 0.828 32 H 0.197 0.803 33 H 0.301 0.699 34 H 0.187 0.813 35 H 0.007 0.993 36 H 0.064 0.936 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.163 15.536 -8.434 17.716 hybrid contribution 1.036 -1.003 0.435 1.506 sum -0.128 14.533 -7.999 16.590 Atomic orbital electron populations 1.20675 0.80794 1.06467 1.05565 1.26277 0.99311 0.89201 0.90038 1.74727 0.86478 1.26605 1.19503 1.47202 1.03708 1.05194 1.67562 1.17801 0.86326 0.88784 1.02172 1.21664 0.89924 1.02828 0.97602 1.21128 1.01927 0.88969 1.01816 1.17746 0.83243 0.87175 1.00831 1.91571 1.58496 1.66859 1.93147 1.18952 0.92453 0.91184 1.12584 1.20278 0.81066 0.88338 0.71870 1.90945 1.48198 1.55932 1.47228 1.84526 1.26479 1.35123 1.84833 1.20992 1.00612 0.88783 0.95827 1.21877 0.92746 0.81961 0.74541 1.90600 1.31917 1.66492 1.47966 1.22046 0.90263 0.97723 1.05620 0.83742 1.18661 0.98353 0.92387 0.87951 1.21519 1.22289 1.07220 1.05882 0.92419 1.25681 0.96855 1.00989 0.95128 1.70025 1.38967 1.37856 1.09707 0.85603 0.79013 0.79802 0.77907 1.19535 1.21141 1.19641 0.88119 0.87154 0.87270 0.82753 0.80347 0.69899 0.81308 0.99309 0.93608 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 10.49 71.24 0.75 -0.56 16 2 C 0.14 3.97 6.93 46.83 0.32 4.30 16 3 N -0.27 -8.07 11.18 -40.85 -0.46 -8.52 16 4 N -0.43 -14.87 3.73 -302.26 -1.13 -16.00 16 5 C 0.14 4.46 6.65 38.07 0.25 4.71 16 6 C -0.10 -2.97 9.34 22.44 0.21 -2.76 16 7 C -0.12 -2.92 10.00 22.26 0.22 -2.70 16 8 C 0.13 3.43 7.28 22.69 0.17 3.60 16 9 F -0.12 -3.44 15.54 44.97 0.70 -2.75 16 10 C -0.15 -3.84 5.88 -20.08 -0.12 -3.96 16 11 C 0.54 12.92 8.27 70.29 0.58 13.50 16 12 O -0.53 -15.55 16.12 19.86 0.32 -15.23 16 13 O -0.50 -8.01 12.68 -56.38 -0.71 -8.73 16 14 C -0.04 -1.10 9.18 22.67 0.21 -0.89 16 15 C 0.50 20.13 7.43 87.94 0.65 20.78 16 16 O -0.50 -22.76 13.90 -3.07 -0.04 -22.80 16 17 C -0.13 -4.84 3.01 -11.74 -0.04 -4.87 16 18 H 0.15 4.77 8.14 -2.39 -0.02 4.75 16 19 C 0.06 2.99 4.52 29.85 0.13 3.12 16 20 C -0.53 -28.44 8.36 25.60 0.21 -28.23 16 21 H 0.06 3.15 7.06 -2.91 -0.02 3.13 16 22 C 0.01 0.66 5.46 84.66 0.46 1.13 16 23 N -0.93 -52.81 13.29 21.45 0.28 -52.53 16 24 Si 0.95 43.84 29.54 68.60 2.03 45.86 16 25 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 26 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 27 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 28 H 0.10 1.68 8.14 -2.39 -0.02 1.67 16 29 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.16 5.23 5.32 -2.91 -0.02 5.21 16 32 H 0.18 3.31 8.06 -2.91 -0.02 3.29 16 33 H 0.44 2.60 9.11 -74.06 -0.67 1.92 16 34 H 0.17 4.10 7.15 -2.91 -0.02 4.08 16 35 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 36 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -72.54 333.95 5.49 -67.06 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 0.48 Total: 6.46 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 4.02 Total: 7.18 kcal Atomic # 7 Polarization: -75.75 SS G_CDS: -1.30 Total: -77.05 kcal Atomic # 8 Polarization: -46.32 SS G_CDS: -0.44 Total: -46.76 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.70 Total: -2.75 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -72.54 5.49 -67.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604616420.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.711 kcal (2) G-P(sol) polarization free energy of solvation -72.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds