Wall clock time and date at job start Tue Mar 31 2020 12:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47042 * 110.80194 * 3 2 1 5 5 N 1.46503 * 109.47198 * 179.97438 * 4 3 2 6 6 C 1.46495 * 120.00047 * 265.11004 * 5 4 3 7 7 C 1.50693 * 109.47545 * 275.73746 * 6 5 4 8 8 H 1.08003 * 119.99777 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00360 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99956 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00013 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47000 * 60.00424 * 11 9 7 13 13 H 1.48503 * 109.46749 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47296 * 300.00063 * 11 9 7 15 15 C 1.34780 * 119.99575 * 85.11188 * 5 4 3 16 16 O 1.21545 * 119.99896 * 5.00521 * 15 5 4 17 17 C 1.47864 * 119.99638 * 185.00837 * 15 5 4 18 18 C 1.39683 * 120.05839 * 311.67251 * 17 15 5 19 19 C 1.38289 * 120.12976 * 179.97438 * 18 17 15 20 20 F 1.35097 * 119.87760 * 180.02562 * 19 18 17 21 21 C 1.38310 * 120.24581 * 359.97438 * 19 18 17 22 22 C 1.39690 * 120.11153 * 0.02660 * 21 19 18 23 23 C 1.47755 * 120.06167 * 179.97438 * 22 21 19 24 24 O 1.21463 * 119.99850 * 179.97438 * 23 22 21 25 25 O 1.34709 * 120.00014 * 0.02562 * 23 22 21 26 26 C 1.39282 * 120.05486 * 131.94934 * 17 15 5 27 27 H 1.09000 * 109.46793 * 350.80737 * 3 2 1 28 28 H 1.08997 * 109.46827 * 230.80433 * 3 2 1 29 29 H 1.09002 * 109.47225 * 59.99906 * 4 3 2 30 30 H 1.08992 * 109.47563 * 300.00322 * 4 3 2 31 31 H 1.09003 * 109.47509 * 35.74791 * 6 5 4 32 32 H 1.09009 * 109.46831 * 155.74367 * 6 5 4 33 33 H 0.96997 * 120.00119 * 179.97438 * 10 9 7 34 34 H 1.07993 * 119.93449 * 359.97438 * 18 17 15 35 35 H 1.07995 * 119.94244 * 180.02562 * 21 19 18 36 36 H 0.96704 * 116.99977 * 179.97438 * 25 23 22 37 37 H 1.07998 * 120.12505 * 0.02562 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1178 0.5132 -1.3484 5 7 4.5828 0.5144 -1.3482 6 6 5.3142 1.7351 -1.0005 7 6 5.4418 2.6093 -2.2213 8 1 5.0199 2.2880 -3.1621 9 6 6.0963 3.8200 -2.1370 10 7 6.6097 4.2116 -0.9913 11 14 6.2538 4.9039 -3.6502 12 1 4.9005 5.2615 -4.1460 13 1 6.9954 6.1413 -3.2977 14 1 6.9914 4.1704 -4.7100 15 6 5.2576 -0.6076 -1.6681 16 8 4.6542 -1.5933 -2.0444 17 6 6.7320 -0.6394 -1.5610 18 6 7.4958 0.3928 -2.1109 19 6 8.8748 0.3649 -2.0112 20 9 9.6086 1.3661 -2.5445 21 6 9.5057 -0.6838 -1.3667 22 6 8.7518 -1.7213 -0.8131 23 6 9.4268 -2.8413 -0.1253 24 8 8.7702 -3.7426 0.3561 25 8 10.7705 -2.8622 -0.0311 26 6 7.3620 -1.7015 -0.9167 27 1 2.9718 -1.0137 0.1642 28 1 2.9710 0.6503 0.7964 29 1 2.7540 1.5275 -1.5127 30 1 2.7548 -0.1364 -2.1448 31 1 4.7731 2.2739 -0.2227 32 1 6.3075 1.4723 -0.6365 33 1 7.0705 5.0631 -0.9321 34 1 7.0085 1.2142 -2.6149 35 1 10.5828 -0.7004 -1.2913 36 1 11.1667 -3.6153 0.4283 37 1 6.7755 -2.5040 -0.4945 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608182921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:15 Heat of formation + Delta-G solvation = -132.322950 kcal Electronic energy + Delta-G solvation = -26363.662621 eV Core-core repulsion = 22213.141063 eV Total energy + Delta-G solvation = -4150.521557 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.100 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.88287 -41.69119 -40.98861 -39.05959 -37.89314 -37.09329 -36.88169 -34.77607 -33.39588 -31.93902 -31.66220 -29.12184 -26.24263 -25.97853 -25.04060 -23.72228 -22.46555 -20.67520 -19.11168 -18.92336 -18.66038 -18.34147 -17.91956 -17.28663 -17.15996 -16.92823 -16.82673 -16.60382 -16.41485 -16.24368 -15.78941 -15.57936 -14.87007 -14.49724 -14.45271 -14.34272 -14.01513 -13.65942 -13.58009 -13.44100 -13.25291 -13.07828 -12.94818 -12.75404 -12.66939 -12.58697 -12.48532 -12.11089 -11.83214 -11.78279 -11.70026 -10.97168 -10.59059 -10.15076 -9.91409 -9.57774 -8.18697 -6.30683 -0.56169 -0.16172 1.25431 1.45570 1.49962 1.53445 1.56966 1.79391 1.80416 1.90183 2.21765 2.43077 2.55753 3.09767 3.12952 3.14182 3.45139 3.83989 3.95453 4.00482 4.06288 4.13090 4.20514 4.53626 4.55813 4.67812 4.83817 4.91537 4.94002 4.99066 5.04557 5.20335 5.30246 5.55054 5.61527 5.68872 5.78897 6.06906 6.45945 6.55795 6.81022 6.96733 7.15651 7.40465 8.85697 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.008451 B = 0.005729 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3312.599615 B = 4886.440059 C = 7681.074689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.246 3.754 3 C -0.032 4.032 4 C 0.123 3.877 5 N -0.583 5.583 6 C 0.240 3.760 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.039 3.961 10 N -0.904 5.904 11 Si 0.935 3.065 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.272 1.272 15 C 0.563 3.437 16 O -0.571 6.571 17 C -0.117 4.117 18 C -0.078 4.078 19 C 0.070 3.930 20 F -0.139 7.139 21 C -0.060 4.060 22 C -0.119 4.119 23 C 0.547 3.453 24 O -0.537 6.537 25 O -0.497 6.497 26 C -0.017 4.017 27 H 0.121 0.879 28 H 0.133 0.867 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.041 0.959 33 H 0.268 0.732 34 H 0.164 0.836 35 H 0.179 0.821 36 H 0.438 0.562 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.582 -8.558 2.456 12.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.072 4.072 3 C -0.073 4.073 4 C -0.001 4.001 5 N -0.312 5.312 6 C 0.119 3.881 7 C -0.587 4.587 8 H 0.078 0.922 9 C -0.164 4.164 10 N -0.542 5.542 11 Si 0.762 3.238 12 H -0.199 1.199 13 H -0.212 1.212 14 H -0.197 1.197 15 C 0.351 3.649 16 O -0.452 6.452 17 C -0.121 4.121 18 C -0.097 4.097 19 C 0.050 3.950 20 F -0.117 7.117 21 C -0.079 4.079 22 C -0.121 4.121 23 C 0.392 3.608 24 O -0.429 6.429 25 O -0.312 6.312 26 C -0.036 4.036 27 H 0.139 0.861 28 H 0.151 0.849 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.181 0.819 35 H 0.196 0.804 36 H 0.301 0.699 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.352 -8.754 2.281 11.054 hybrid contribution 0.800 0.815 -0.609 1.294 sum 7.151 -7.939 1.672 10.815 Atomic orbital electron populations 1.81214 1.14324 1.11017 1.10192 1.29185 0.95051 0.91280 0.91649 1.19716 0.80174 1.06490 1.00946 1.21251 0.79371 1.03334 0.96177 1.48035 1.06496 1.11319 1.65340 1.19462 0.92704 0.80256 0.95637 1.21566 1.36848 1.03607 0.96713 0.92247 1.25414 0.94821 0.98388 0.97793 1.69953 1.36343 1.22284 1.25588 0.85943 0.78348 0.78708 0.80817 1.19865 1.21187 1.19750 1.18220 0.86828 0.82773 0.77035 1.90734 1.70102 1.35691 1.48691 1.19491 0.93567 0.95880 1.03113 1.22549 0.92995 0.98142 0.96018 1.17499 0.88951 0.87938 1.00572 1.91521 1.76704 1.59192 1.84301 1.21683 1.02641 0.90371 0.93188 1.18634 0.92570 0.95729 1.05139 1.20316 0.81064 0.83810 0.75638 1.90906 1.67117 1.38337 1.46532 1.84499 1.20082 1.53085 1.73508 1.21246 0.93089 0.95830 0.93442 0.86069 0.84934 0.88724 0.90240 0.94501 0.94068 0.92285 0.81854 0.80392 0.69924 0.83236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.50 18.54 20.01 0.37 -15.12 16 2 C 0.25 6.44 15.43 89.44 1.38 7.82 16 3 C -0.03 -0.72 5.99 28.79 0.17 -0.55 16 4 C 0.12 3.50 5.37 86.38 0.46 3.96 16 5 N -0.58 -19.73 2.47 -829.57 -2.05 -21.77 16 6 C 0.24 9.41 4.64 85.63 0.40 9.81 16 7 C -0.55 -24.32 6.84 25.60 0.18 -24.15 16 8 H 0.06 2.68 7.81 -2.91 -0.02 2.66 16 9 C 0.04 1.80 5.46 84.66 0.46 2.27 16 10 N -0.90 -44.54 13.29 21.45 0.28 -44.26 16 11 Si 0.94 38.37 29.54 68.60 2.03 40.39 16 12 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 13 H -0.29 -11.79 7.11 99.48 0.71 -11.09 16 14 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 15 C 0.56 19.78 7.21 86.79 0.63 20.41 16 16 O -0.57 -21.86 16.65 -3.86 -0.06 -21.93 16 17 C -0.12 -3.86 4.95 -20.13 -0.10 -3.96 16 18 C -0.08 -2.71 7.49 22.63 0.17 -2.54 16 19 C 0.07 2.15 7.28 22.30 0.16 2.31 16 20 F -0.14 -4.62 17.26 44.97 0.78 -3.84 16 21 C -0.06 -1.45 9.59 22.64 0.22 -1.24 16 22 C -0.12 -2.98 5.87 -20.14 -0.12 -3.10 16 23 C 0.55 12.03 8.27 70.34 0.58 12.61 16 24 O -0.54 -14.79 17.12 19.96 0.34 -14.45 16 25 O -0.50 -6.90 12.67 -56.18 -0.71 -7.62 16 26 C -0.02 -0.49 9.25 22.80 0.21 -0.28 16 27 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.09 2.70 8.03 -2.39 -0.02 2.68 16 30 H 0.08 2.34 7.51 -2.39 -0.02 2.32 16 31 H 0.04 1.50 8.11 -2.39 -0.02 1.48 16 32 H 0.04 1.71 5.40 -2.38 -0.01 1.69 16 33 H 0.27 12.85 8.31 -92.71 -0.77 12.08 16 34 H 0.16 6.54 4.73 -2.91 -0.01 6.53 16 35 H 0.18 3.23 7.60 -2.91 -0.02 3.21 16 36 H 0.44 1.79 9.11 -74.05 -0.67 1.12 16 37 H 0.15 4.21 7.64 -2.91 -0.02 4.19 16 Total: -1.00 -60.37 343.04 6.26 -54.10 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.49 Total: 11.11 kcal Atomic # 6 Polarization: 18.57 SS G_CDS: 4.80 Total: 23.38 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -1.39 Total: -81.15 kcal Atomic # 8 Polarization: -43.55 SS G_CDS: -0.43 Total: -43.99 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.78 Total: -3.84 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.39 kcal Total: -60.37 6.26 -54.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608182921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.220 kcal (2) G-P(sol) polarization free energy of solvation -60.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds