Wall clock time and date at job start Tue Mar 31 2020 12:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35684 * 117.00004 * 2 1 4 4 C 1.37925 * 120.19373 * 359.97438 * 3 2 1 5 5 C 1.39681 * 119.93584 * 179.97438 * 4 3 2 6 6 C 1.47929 * 119.84601 * 179.97438 * 5 4 3 7 7 C 1.39655 * 120.06786 * 180.02562 * 6 5 4 8 8 C 1.38012 * 119.92482 * 180.02562 * 7 6 5 9 9 F 1.35098 * 119.96355 * 179.97438 * 8 7 6 10 10 C 1.39061 * 120.06864 * 359.97438 * 8 7 6 11 11 O 1.35925 * 119.92318 * 179.97438 * 10 8 7 12 12 C 1.42904 * 116.99694 * 90.00253 * 11 10 8 13 13 C 1.39049 * 120.14610 * 0.27650 * 10 8 7 14 14 F 1.35106 * 119.96616 * 179.72562 * 13 10 8 15 15 C 1.38007 * 120.06922 * 359.48748 * 13 10 8 16 16 C 1.40124 * 120.31217 * 0.25937 * 5 4 3 17 17 C 1.36090 * 120.38600 * 359.47141 * 16 5 4 18 18 C 1.40923 * 120.06136 * 0.52657 * 17 16 5 19 19 C 1.40816 * 120.16032 * 179.75446 * 18 17 16 20 20 H 1.07997 * 120.00606 * 154.21316 * 19 18 17 21 21 C 1.39971 * 119.99795 * 334.21859 * 19 18 17 22 22 N 1.30862 * 119.99740 * 343.25451 * 21 19 18 23 23 Si 1.86797 * 119.99854 * 163.25809 * 21 19 18 24 24 H 1.48500 * 109.47347 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47273 * 119.99932 * 23 21 19 26 26 H 1.48499 * 109.46858 * 239.99726 * 23 21 19 27 27 H 1.09000 * 109.47135 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47845 * 300.00618 * 1 2 3 29 29 H 1.09007 * 109.47114 * 60.00213 * 1 2 3 30 30 H 1.08008 * 120.03134 * 359.96091 * 4 3 2 31 31 H 1.07997 * 120.03949 * 359.97438 * 7 6 5 32 32 H 1.08994 * 109.46987 * 299.99452 * 12 11 10 33 33 H 1.08995 * 109.46925 * 59.99689 * 12 11 10 34 34 H 1.09001 * 109.46630 * 179.97438 * 12 11 10 35 35 H 1.08005 * 120.03831 * 180.28396 * 15 13 10 36 36 H 1.07998 * 119.81120 * 179.72103 * 16 5 4 37 37 H 1.08001 * 119.97220 * 180.25549 * 17 16 5 38 38 H 0.97000 * 119.99449 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 1.2977 2.3682 -0.0005 5 6 1.9374 3.6099 0.0000 6 6 1.1340 4.8520 -0.0011 7 6 1.7688 6.0960 -0.0011 8 6 1.0163 7.2529 -0.0017 9 9 1.6296 8.4567 -0.0012 10 6 -0.3724 7.1808 -0.0028 11 8 -1.1106 8.3222 -0.0028 12 6 -1.4620 8.8675 -1.2761 13 6 -1.0075 5.9439 0.0025 14 9 -2.3570 5.8781 0.0071 15 6 -0.2609 4.7832 -0.0019 16 6 3.3366 3.6846 -0.0044 17 6 4.0866 2.5490 0.0016 18 6 3.4579 1.2878 0.0011 19 6 4.2319 0.1114 0.0021 20 1 3.8248 -0.8026 0.4086 21 6 5.5290 0.1267 -0.5238 22 7 5.9087 1.1095 -1.3000 23 14 6.7178 -1.2557 -0.1176 24 1 6.0493 -2.2376 0.7736 25 1 7.1387 -1.9310 -1.3715 26 1 7.9106 -0.6972 0.5683 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 0.2188 2.3159 -0.0016 31 1 2.8472 6.1525 0.0001 32 1 -0.5553 9.1052 -1.8322 33 1 -2.0498 8.1384 -1.8338 34 1 -2.0494 9.7745 -1.1332 35 1 -0.7547 3.8227 -0.0024 36 1 3.8228 4.6489 -0.0085 37 1 5.1646 2.6144 0.0024 38 1 6.8078 1.1202 -1.6640 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243224708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:24 Heat of formation + Delta-G solvation = -121.155887 kcal Electronic energy + Delta-G solvation = -25948.627318 eV Core-core repulsion = 21778.670040 eV Total energy + Delta-G solvation = -4169.957279 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.101 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.80138 -48.75930 -39.45586 -38.79547 -37.45469 -36.05005 -34.03447 -31.21149 -30.37930 -29.04571 -28.81429 -26.97601 -26.70585 -25.02758 -22.93453 -22.57015 -20.71270 -20.42240 -18.23544 -17.71628 -17.47927 -17.20193 -16.23886 -16.17390 -15.76523 -15.18667 -15.11433 -15.06804 -14.80491 -14.77944 -14.63464 -14.42567 -14.07089 -13.68048 -13.09030 -12.83871 -12.46836 -12.36173 -12.20081 -12.06819 -11.88468 -11.43866 -11.43358 -11.32748 -11.08999 -10.93816 -10.67299 -10.15725 -10.07464 -9.87514 -9.82396 -9.52036 -8.63692 -8.57182 -7.52823 -7.27688 -7.02451 -4.51667 0.89270 1.25242 2.43370 2.83217 2.90982 2.93268 2.98448 3.54270 3.69764 3.82564 4.06038 4.31538 4.41865 4.64727 5.01090 5.05871 5.24666 5.29971 5.34695 5.39018 5.48276 5.63569 5.70654 5.71002 5.85952 5.96621 6.02488 6.10570 6.14600 6.33574 6.40990 6.67002 6.74530 6.84493 7.01010 7.09207 7.42141 7.46046 7.52093 7.77601 7.87455 8.13584 8.34956 8.46109 8.77332 9.78965 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.019865 B = 0.003300 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.184162 B = 8483.177806 C = 9723.188712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.312 6.312 3 C 0.009 3.991 4 C -0.141 4.141 5 C -0.193 4.193 6 C 0.083 3.917 7 C -0.184 4.184 8 C 0.127 3.873 9 F -0.132 7.132 10 C -0.032 4.032 11 O -0.320 6.320 12 C 0.029 3.971 13 C 0.126 3.874 14 F -0.133 7.133 15 C -0.187 4.187 16 C -0.080 4.080 17 C -0.160 4.160 18 C 0.113 3.887 19 C -0.412 4.412 20 H 0.092 0.908 21 C 0.068 3.932 22 N -0.769 5.769 23 Si 0.917 3.083 24 H -0.256 1.256 25 H -0.271 1.271 26 H -0.268 1.268 27 H 0.084 0.916 28 H 0.041 0.959 29 H 0.042 0.958 30 H 0.104 0.896 31 H 0.145 0.855 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.093 0.907 35 H 0.140 0.860 36 H 0.098 0.902 37 H 0.128 0.872 38 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.640 5.429 -0.141 8.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.227 6.227 3 C -0.035 4.035 4 C -0.160 4.160 5 C -0.194 4.194 6 C 0.082 3.918 7 C -0.203 4.203 8 C 0.107 3.893 9 F -0.111 7.111 10 C -0.078 4.078 11 O -0.236 6.236 12 C -0.065 4.065 13 C 0.106 3.894 14 F -0.112 7.112 15 C -0.206 4.206 16 C -0.098 4.098 17 C -0.179 4.179 18 C 0.109 3.891 19 C -0.438 4.438 20 H 0.110 0.890 21 C -0.153 4.153 22 N -0.392 5.392 23 Si 0.740 3.260 24 H -0.179 1.179 25 H -0.196 1.196 26 H -0.193 1.193 27 H 0.102 0.898 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.122 0.878 31 H 0.163 0.837 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.112 0.888 35 H 0.158 0.842 36 H 0.116 0.884 37 H 0.145 0.855 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.428 5.453 -0.150 8.431 hybrid contribution 0.115 -0.138 -0.257 0.313 sum -6.313 5.315 -0.407 8.263 Atomic orbital electron populations 1.22776 0.81382 1.02077 1.00099 1.85971 1.18502 1.27867 1.90322 1.19028 0.92206 0.82804 1.09462 1.20673 0.97524 0.91879 1.05958 1.17553 0.92274 0.89333 1.20239 1.18537 0.91127 0.92674 0.89451 1.21161 1.01130 0.89951 1.08056 1.17575 0.88990 0.80945 1.01809 1.91474 1.82856 1.43019 1.93718 1.18300 0.88521 0.85765 1.15169 1.86133 1.70595 1.37824 1.29047 1.23067 0.99810 0.98609 0.85024 1.17557 0.76915 0.92972 1.01928 1.91472 1.28788 1.97148 1.93752 1.21095 0.93893 0.97001 1.08634 1.20489 0.92211 0.97591 0.99530 1.20760 0.99796 0.90397 1.06969 1.17244 0.87558 0.94167 0.90081 1.19773 0.96591 0.97197 1.30277 0.89030 1.26126 0.99012 0.97498 0.92704 1.69828 1.19720 1.29832 1.19780 0.86090 0.79566 0.80708 0.79601 1.17937 1.19587 1.19312 0.89776 0.94024 0.93985 0.87832 0.83749 0.93556 0.93611 0.88846 0.84241 0.88423 0.85481 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.81 101.05 0.99 1.50 16 2 O -0.31 -6.62 9.78 -18.76 -0.18 -6.81 16 3 C 0.01 0.21 6.71 -38.45 -0.26 -0.05 16 4 C -0.14 -2.90 8.40 -39.16 -0.33 -3.23 16 5 C -0.19 -3.92 5.89 -104.68 -0.62 -4.54 16 6 C 0.08 1.49 5.88 -104.87 -0.62 0.87 16 7 C -0.18 -3.10 9.39 -39.14 -0.37 -3.47 16 8 C 0.13 2.11 7.30 -39.36 -0.29 1.82 16 9 F -0.13 -2.16 17.10 2.25 0.04 -2.12 16 10 C -0.03 -0.53 5.74 -38.98 -0.22 -0.76 16 11 O -0.32 -5.09 10.13 -19.50 -0.20 -5.29 16 12 C 0.03 0.35 11.13 101.05 1.12 1.47 16 13 C 0.13 2.08 7.30 -39.37 -0.29 1.80 16 14 F -0.13 -2.14 17.10 2.25 0.04 -2.10 16 15 C -0.19 -3.13 9.39 -39.14 -0.37 -3.49 16 16 C -0.08 -1.68 9.34 -39.65 -0.37 -2.05 16 17 C -0.16 -3.72 8.60 -39.34 -0.34 -4.06 16 18 C 0.11 2.76 5.58 -106.66 -0.59 2.16 16 19 C -0.41 -9.97 8.69 -37.96 -0.33 -10.30 16 20 H 0.09 2.20 7.65 -52.49 -0.40 1.80 16 21 C 0.07 1.53 5.15 -17.32 -0.09 1.44 16 22 N -0.77 -17.74 10.96 55.55 0.61 -17.14 16 23 Si 0.92 16.86 29.59 -169.99 -5.03 11.83 16 24 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 25 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 26 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.04 0.60 7.66 -51.93 -0.40 0.20 16 29 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 30 H 0.10 1.85 4.40 -52.48 -0.23 1.62 16 31 H 0.14 2.28 6.16 -52.49 -0.32 1.95 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.14 2.15 6.17 -52.48 -0.32 1.83 16 36 H 0.10 1.82 6.16 -52.49 -0.32 1.49 16 37 H 0.13 3.01 6.19 -52.49 -0.32 2.68 16 38 H 0.29 5.96 8.30 -40.82 -0.34 5.62 16 LS Contribution 333.22 15.07 5.02 5.02 Total: -1.00 -25.85 333.22 -6.21 -32.06 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -3.55 Total: 5.43 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -2.96 Total: -20.89 kcal Atomic # 7 Polarization: -17.74 SS G_CDS: 0.61 Total: -17.14 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -0.38 Total: -12.09 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.08 Total: -4.22 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -5.03 Total: 11.83 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -25.85 -6.21 -32.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243224708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.098 kcal (2) G-P(sol) polarization free energy of solvation -25.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds