Wall clock time and date at job start Tue Mar 31 2020 12:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35684 * 117.00004 * 2 1 4 4 C 1.37925 * 120.19373 * 359.97438 * 3 2 1 5 5 C 1.39681 * 119.93584 * 179.97438 * 4 3 2 6 6 C 1.47929 * 119.84601 * 179.97438 * 5 4 3 7 7 C 1.39655 * 120.06786 * 180.02562 * 6 5 4 8 8 C 1.38012 * 119.92482 * 180.02562 * 7 6 5 9 9 F 1.35098 * 119.96355 * 179.97438 * 8 7 6 10 10 C 1.39061 * 120.06864 * 359.97438 * 8 7 6 11 11 O 1.35925 * 119.92318 * 179.97438 * 10 8 7 12 12 C 1.42904 * 116.99694 * 90.00253 * 11 10 8 13 13 C 1.39049 * 120.14610 * 0.27650 * 10 8 7 14 14 F 1.35106 * 119.96616 * 179.72562 * 13 10 8 15 15 C 1.38007 * 120.06922 * 359.48748 * 13 10 8 16 16 C 1.40124 * 120.31217 * 0.25937 * 5 4 3 17 17 C 1.36090 * 120.38600 * 359.47141 * 16 5 4 18 18 C 1.40923 * 120.06136 * 0.52657 * 17 16 5 19 19 C 1.40816 * 120.16032 * 179.75446 * 18 17 16 20 20 H 1.07997 * 120.00606 * 154.21316 * 19 18 17 21 21 C 1.39971 * 119.99795 * 334.21859 * 19 18 17 22 22 N 1.30862 * 119.99740 * 343.25451 * 21 19 18 23 23 Si 1.86797 * 119.99854 * 163.25809 * 21 19 18 24 24 H 1.48500 * 109.47347 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47273 * 119.99932 * 23 21 19 26 26 H 1.48499 * 109.46858 * 239.99726 * 23 21 19 27 27 H 1.09000 * 109.47135 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47845 * 300.00618 * 1 2 3 29 29 H 1.09007 * 109.47114 * 60.00213 * 1 2 3 30 30 H 1.08008 * 120.03134 * 359.96091 * 4 3 2 31 31 H 1.07997 * 120.03949 * 359.97438 * 7 6 5 32 32 H 1.08994 * 109.46987 * 299.99452 * 12 11 10 33 33 H 1.08995 * 109.46925 * 59.99689 * 12 11 10 34 34 H 1.09001 * 109.46630 * 179.97438 * 12 11 10 35 35 H 1.08005 * 120.03831 * 180.28396 * 15 13 10 36 36 H 1.07998 * 119.81120 * 179.72103 * 16 5 4 37 37 H 1.08001 * 119.97220 * 180.25549 * 17 16 5 38 38 H 0.97000 * 119.99449 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 1.2977 2.3682 -0.0005 5 6 1.9374 3.6099 0.0000 6 6 1.1340 4.8520 -0.0011 7 6 1.7688 6.0960 -0.0011 8 6 1.0163 7.2529 -0.0017 9 9 1.6296 8.4567 -0.0012 10 6 -0.3724 7.1808 -0.0028 11 8 -1.1106 8.3222 -0.0028 12 6 -1.4620 8.8675 -1.2761 13 6 -1.0075 5.9439 0.0025 14 9 -2.3570 5.8781 0.0071 15 6 -0.2609 4.7832 -0.0019 16 6 3.3366 3.6846 -0.0044 17 6 4.0866 2.5490 0.0016 18 6 3.4579 1.2878 0.0011 19 6 4.2319 0.1114 0.0021 20 1 3.8248 -0.8026 0.4086 21 6 5.5290 0.1267 -0.5238 22 7 5.9087 1.1095 -1.3000 23 14 6.7178 -1.2557 -0.1176 24 1 6.0493 -2.2376 0.7736 25 1 7.1387 -1.9310 -1.3715 26 1 7.9106 -0.6972 0.5683 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 0.2188 2.3159 -0.0016 31 1 2.8472 6.1525 0.0001 32 1 -0.5553 9.1052 -1.8322 33 1 -2.0498 8.1384 -1.8338 34 1 -2.0494 9.7745 -1.1332 35 1 -0.7547 3.8227 -0.0024 36 1 3.8228 4.6489 -0.0085 37 1 5.1646 2.6144 0.0024 38 1 6.8078 1.1202 -1.6640 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243224708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:23 Heat of formation + Delta-G solvation = -132.919920 kcal Electronic energy + Delta-G solvation = -25949.137445 eV Core-core repulsion = 21778.670040 eV Total energy + Delta-G solvation = -4170.467406 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.101 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.10032 -50.06365 -40.90455 -40.23274 -38.82465 -37.59743 -35.63463 -32.74367 -31.78963 -30.55282 -30.32121 -28.17632 -28.03160 -26.52262 -24.31763 -24.04045 -22.27820 -21.96886 -19.65177 -19.27291 -18.82074 -18.54435 -17.68649 -17.49250 -17.26690 -16.62500 -16.47402 -16.41396 -16.23648 -16.11917 -15.97086 -15.54387 -15.49468 -15.16690 -14.62129 -14.26968 -13.91017 -13.82229 -13.64201 -13.31953 -13.27750 -12.89380 -12.81074 -12.72551 -12.48551 -12.42597 -12.11261 -11.63082 -11.59483 -11.41085 -11.15286 -11.12655 -10.12571 -9.90011 -9.12909 -8.90646 -8.64274 -6.25405 -0.49274 -0.09644 0.89282 1.13109 1.40174 1.47176 1.55184 2.17120 2.20534 2.47553 2.72667 2.82579 2.89253 3.29410 3.62364 3.65536 3.70927 4.02482 4.23378 4.33451 4.35947 4.42680 4.44868 4.50872 4.57604 4.66839 4.68785 4.69698 4.77293 4.86751 4.98572 5.07403 5.16070 5.39747 5.41872 5.47874 5.77012 5.82472 6.10287 6.19074 6.26346 6.45197 6.68920 6.78403 7.16780 8.21321 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.019865 B = 0.003300 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.184162 B = 8483.177806 C = 9723.188712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.338 6.338 3 C -0.005 4.005 4 C -0.146 4.146 5 C -0.180 4.180 6 C 0.063 3.937 7 C -0.171 4.171 8 C 0.119 3.881 9 F -0.130 7.130 10 C -0.015 4.015 11 O -0.337 6.337 12 C 0.023 3.977 13 C 0.120 3.880 14 F -0.129 7.129 15 C -0.171 4.171 16 C -0.090 4.090 17 C -0.175 4.175 18 C 0.078 3.922 19 C -0.457 4.457 20 H 0.077 0.923 21 C 0.035 3.965 22 N -0.806 5.806 23 Si 0.983 3.017 24 H -0.260 1.260 25 H -0.265 1.265 26 H -0.260 1.260 27 H 0.111 0.889 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.132 0.868 31 H 0.154 0.846 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.123 0.877 35 H 0.154 0.846 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.523 7.040 -0.187 11.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.253 6.253 3 C -0.049 4.049 4 C -0.164 4.164 5 C -0.182 4.182 6 C 0.063 3.937 7 C -0.190 4.190 8 C 0.099 3.901 9 F -0.108 7.108 10 C -0.060 4.060 11 O -0.254 6.254 12 C -0.070 4.070 13 C 0.101 3.899 14 F -0.107 7.107 15 C -0.189 4.189 16 C -0.108 4.108 17 C -0.195 4.195 18 C 0.075 3.925 19 C -0.485 4.485 20 H 0.096 0.904 21 C -0.183 4.183 22 N -0.430 5.430 23 Si 0.804 3.196 24 H -0.184 1.184 25 H -0.189 1.189 26 H -0.185 1.185 27 H 0.130 0.870 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.149 0.851 31 H 0.172 0.828 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.141 0.859 35 H 0.172 0.828 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.341 7.085 -0.200 10.945 hybrid contribution 0.300 -0.238 -0.245 0.454 sum -8.041 6.847 -0.444 10.570 Atomic orbital electron populations 1.23116 0.78585 1.04381 1.01061 1.85927 1.21483 1.27569 1.90331 1.19198 0.92134 0.84017 1.09548 1.20948 0.98879 0.91227 1.05388 1.17828 0.92257 0.90389 1.17678 1.18410 0.91585 0.92021 0.91683 1.21265 1.01757 0.89672 1.06267 1.17537 0.89046 0.80978 1.02503 1.91485 1.82811 1.42757 1.93747 1.18491 0.88688 0.86329 1.12529 1.86086 1.70419 1.37402 1.31483 1.23348 1.00588 0.99751 0.83357 1.17498 0.77160 0.92791 1.02499 1.91489 1.28365 1.97105 1.93752 1.21211 0.93314 0.97855 1.06561 1.20717 0.92803 0.97846 0.99464 1.20735 0.99465 0.91101 1.08155 1.17595 0.88944 0.94680 0.91296 1.19780 0.98323 0.96978 1.33399 0.90438 1.26805 0.99818 0.99677 0.91967 1.69851 1.20436 1.31655 1.21062 0.85124 0.77415 0.77773 0.79311 1.18364 1.18946 1.18456 0.87030 0.92762 0.93032 0.85077 0.82828 0.93051 0.92957 0.85928 0.82807 0.86273 0.86846 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.70 9.81 113.37 1.11 1.81 16 2 O -0.34 -14.58 9.78 -90.03 -0.88 -15.46 16 3 C 0.00 -0.22 6.71 23.00 0.15 -0.06 16 4 C -0.15 -5.86 8.40 22.54 0.19 -5.67 16 5 C -0.18 -7.14 5.89 -19.90 -0.12 -7.26 16 6 C 0.06 2.14 5.88 -20.03 -0.12 2.02 16 7 C -0.17 -5.33 9.39 22.56 0.21 -5.12 16 8 C 0.12 3.63 7.30 22.41 0.16 3.79 16 9 F -0.13 -3.88 17.10 44.97 0.77 -3.11 16 10 C -0.01 -0.44 5.74 22.66 0.13 -0.31 16 11 O -0.34 -9.61 10.13 -92.70 -0.94 -10.55 16 12 C 0.02 0.47 11.13 113.37 1.26 1.73 16 13 C 0.12 3.58 7.30 22.41 0.16 3.74 16 14 F -0.13 -3.71 17.10 44.97 0.77 -2.94 16 15 C -0.17 -5.16 9.39 22.56 0.21 -4.95 16 16 C -0.09 -3.81 9.34 22.23 0.21 -3.60 16 17 C -0.17 -8.50 8.60 22.43 0.19 -8.31 16 18 C 0.08 3.99 5.58 -21.18 -0.12 3.87 16 19 C -0.46 -23.57 8.69 23.32 0.20 -23.37 16 20 H 0.08 4.01 7.65 -2.91 -0.02 3.99 16 21 C 0.03 1.63 5.15 85.26 0.44 2.07 16 22 N -0.81 -39.07 10.96 21.83 0.24 -38.83 16 23 Si 0.98 36.00 29.59 68.60 2.03 38.03 16 24 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 25 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 26 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 27 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.05 1.46 7.66 -2.39 -0.02 1.44 16 29 H 0.05 1.42 7.66 -2.38 -0.02 1.40 16 30 H 0.13 4.39 4.40 -2.91 -0.01 4.38 16 31 H 0.15 4.49 6.16 -2.91 -0.02 4.47 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 34 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.15 4.19 6.17 -2.91 -0.02 4.17 16 36 H 0.12 4.36 6.16 -2.91 -0.02 4.34 16 37 H 0.11 5.70 6.19 -2.91 -0.02 5.69 16 38 H 0.29 12.73 8.30 -92.71 -0.77 11.96 16 Total: -1.00 -57.48 333.22 7.41 -50.07 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 1.13 Total: 22.39 kcal Atomic # 6 Polarization: -43.91 SS G_CDS: 4.29 Total: -39.62 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.24 Total: -38.83 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -1.82 Total: -26.01 kcal Atomic # 9 Polarization: -7.58 SS G_CDS: 1.54 Total: -6.05 kcal Atomic # 14 Polarization: 36.00 SS G_CDS: 2.03 Total: 38.03 kcal Total: -57.48 7.41 -50.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243224708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.850 kcal (2) G-P(sol) polarization free energy of solvation -57.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds