Wall clock time and date at job start Tue Mar 31 2020 13:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.46975 * 2 1 4 4 N 1.46503 * 109.47241 * 180.02562 * 3 2 1 5 5 C 1.36941 * 119.99834 * 272.66378 * 4 3 2 6 6 H 1.08005 * 120.00075 * 320.39872 * 5 4 3 7 7 C 1.38805 * 120.00048 * 140.39947 * 5 4 3 8 8 N 1.31621 * 120.00112 * 158.27311 * 7 5 4 9 9 Si 1.86800 * 120.00204 * 338.26708 * 7 5 4 10 10 H 1.48501 * 109.46902 * 95.53438 * 9 7 5 11 11 H 1.48503 * 109.47334 * 215.53392 * 9 7 5 12 12 H 1.48500 * 109.47011 * 335.53656 * 9 7 5 13 13 C 1.46496 * 120.00282 * 92.66022 * 4 3 2 14 14 C 1.50696 * 109.47244 * 90.00254 * 13 4 3 15 15 O 1.21289 * 119.99778 * 359.97438 * 14 13 4 16 16 N 1.34776 * 120.00084 * 180.02562 * 14 13 4 17 17 C 1.39651 * 120.00088 * 184.65574 * 16 14 13 18 18 C 1.36194 * 120.11578 * 26.01049 * 17 16 14 19 19 C 1.39324 * 121.49522 * 179.75568 * 18 17 16 20 20 C 1.35563 * 121.66866 * 0.55569 * 19 18 17 21 21 C 1.41827 * 120.03589 * 359.45274 * 20 19 18 22 22 N 1.32328 * 130.97345 * 180.27107 * 21 20 19 23 23 S 1.55541 * 109.40649 * 179.97438 * 22 21 20 24 24 N 1.55548 * 100.18151 * 359.97438 * 23 22 21 25 25 C 1.32226 * 109.42136 * 0.02562 * 24 23 22 26 26 H 1.08993 * 109.47084 * 299.99584 * 1 2 3 27 27 H 1.09000 * 109.47210 * 60.00243 * 1 2 3 28 28 H 1.08998 * 109.46888 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47121 * 240.00069 * 2 1 3 30 30 H 1.08997 * 109.47020 * 120.00686 * 2 1 3 31 31 H 1.09006 * 109.47139 * 60.00081 * 3 2 1 32 32 H 1.09003 * 109.47671 * 299.99772 * 3 2 1 33 33 H 0.96998 * 120.00205 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.46821 * 330.00099 * 13 4 3 35 35 H 1.09005 * 109.47320 * 210.00371 * 13 4 3 36 36 H 0.97003 * 120.00027 * 4.65289 * 16 14 13 37 37 H 1.08002 * 119.25244 * 0.03847 * 18 17 16 38 38 H 1.08000 * 119.16665 * 180.30746 * 19 18 17 39 39 H 1.08006 * 119.98123 * 179.71933 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3872 1.1838 6 1 3.8364 1.9442 2.0388 7 6 5.3394 0.6154 1.2854 8 7 6.2227 0.8711 2.2270 9 14 5.6323 -0.7863 0.0859 10 1 6.4897 -0.3118 -1.0299 11 1 6.3089 -1.9059 0.7885 12 1 4.3311 -1.2552 -0.4547 13 6 4.2370 1.5016 -1.2682 14 6 4.4880 2.9411 -1.6367 15 8 4.0938 3.8302 -0.9120 16 7 5.1497 3.2406 -2.7720 17 6 5.4677 4.5684 -3.0654 18 6 5.6124 5.4747 -2.0591 19 6 5.9342 6.8052 -2.3187 20 6 6.1073 7.2620 -3.5832 21 6 5.9729 6.3761 -4.6826 22 7 6.0974 6.5827 -5.9837 23 16 5.8426 5.2507 -6.7453 24 7 5.5571 4.2997 -5.5479 25 6 5.6424 4.9791 -4.4168 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 7.0257 0.3316 2.2983 34 1 3.6476 1.0237 -2.0507 35 1 5.1895 0.9822 -1.1623 36 1 5.4050 2.5338 -3.3854 37 1 5.4790 5.1538 -1.0366 38 1 6.0447 7.4910 -1.4916 39 1 6.3520 8.3001 -3.7534 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049981049.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:10 Heat of formation + Delta-G solvation = 73.005432 kcal Electronic energy + Delta-G solvation = -24350.851017 eV Core-core repulsion = 20807.739093 eV Total energy + Delta-G solvation = -3543.111923 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.14649 -39.43919 -36.65667 -35.81014 -34.75225 -33.12097 -32.91295 -31.37256 -29.46720 -27.59581 -27.02295 -25.78249 -22.93790 -22.51596 -21.75988 -20.50260 -19.87231 -19.32885 -17.81423 -17.72466 -16.65467 -16.09682 -15.84225 -15.48698 -15.26237 -14.91313 -14.51356 -14.19101 -13.99957 -13.47162 -12.87819 -12.71365 -12.53602 -12.48590 -12.23615 -12.00581 -11.87812 -11.74332 -11.56227 -11.24930 -11.02721 -10.97430 -10.87154 -10.79049 -10.61187 -10.29645 -9.95692 -9.89732 -9.66634 -9.23648 -8.75547 -8.59967 -7.63921 -6.94840 -6.08023 -3.51892 -0.16807 1.31169 1.39137 1.66360 1.74257 3.10541 3.14970 3.23611 3.37843 3.40987 3.71048 4.19369 4.39830 4.84575 4.87423 4.92647 4.97707 5.19197 5.33849 5.37228 5.59220 5.65087 5.73717 5.82508 5.91654 5.95866 6.04917 6.11955 6.22781 6.35205 6.37420 6.48991 6.49523 6.51063 6.64058 6.86005 7.04445 7.07242 7.66468 7.95640 8.34877 8.61929 8.88090 9.59154 9.97834 11.07142 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.015428 B = 0.003678 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.486110 B = 7610.733243 C = 7951.594939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.155 3.845 4 N -0.576 5.576 5 C -0.262 4.262 6 H 0.082 0.918 7 C 0.037 3.963 8 N -0.892 5.892 9 Si 0.864 3.136 10 H -0.286 1.286 11 H -0.296 1.296 12 H -0.261 1.261 13 C 0.120 3.880 14 C 0.484 3.516 15 O -0.491 6.491 16 N -0.674 5.674 17 C 0.213 3.787 18 C -0.137 4.137 19 C -0.048 4.048 20 C -0.116 4.116 21 C 0.105 3.895 22 N -0.602 5.602 23 S 0.772 5.228 24 N -0.588 5.588 25 C 0.064 3.936 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.264 0.736 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.410 0.590 37 H 0.165 0.835 38 H 0.140 0.860 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.872 6.720 -16.048 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.030 3.970 4 N -0.295 5.295 5 C -0.391 4.391 6 H 0.099 0.901 7 C -0.164 4.164 8 N -0.532 5.532 9 Si 0.693 3.307 10 H -0.214 1.214 11 H -0.224 1.224 12 H -0.185 1.185 13 C -0.011 4.011 14 C 0.270 3.730 15 O -0.362 6.362 16 N -0.319 5.319 17 C 0.108 3.892 18 C -0.164 4.164 19 C -0.073 4.073 20 C -0.141 4.141 21 C -0.054 4.054 22 N -0.453 5.453 23 S 0.818 5.182 24 N -0.439 5.439 25 C -0.098 4.098 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.246 0.754 37 H 0.182 0.818 38 H 0.158 0.842 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.041 6.748 -17.582 18.943 hybrid contribution 0.571 -0.820 0.683 1.210 sum -1.470 5.928 -16.899 17.969 Atomic orbital electron populations 1.21722 0.97044 1.00592 1.01119 1.22119 0.93949 1.00410 1.02023 1.20944 0.83001 0.93504 0.99590 1.43789 1.00834 1.83663 1.01243 1.18780 1.07425 1.23452 0.89416 0.90094 1.25524 0.96778 0.97620 0.96446 1.69874 1.09162 1.39093 1.35035 0.87111 0.78332 0.84411 0.80832 1.21432 1.22361 1.18547 1.21444 0.99038 0.89758 0.90872 1.23518 0.75580 0.95215 0.78663 1.90579 1.47986 1.48781 1.48859 1.44182 1.57097 1.05756 1.24831 1.16811 0.98332 0.86694 0.87335 1.21150 1.01602 0.92735 1.00958 1.20704 0.94844 0.95434 0.96334 1.20114 1.06349 0.98695 0.88984 1.21140 1.01614 0.93288 0.89394 1.72238 1.28911 1.33222 1.10911 1.78423 1.39687 0.83330 1.16715 1.72074 1.26684 1.39027 1.06131 1.21229 1.05515 0.90911 0.92172 0.92952 0.93517 0.93636 0.93248 0.91444 0.92682 0.94344 0.92567 0.90816 0.89674 0.75431 0.81753 0.84226 0.84588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.16 0.37 -1.69 16 2 C -0.15 -2.56 6.25 -26.73 -0.17 -2.72 16 3 C 0.16 3.05 5.67 -4.04 -0.02 3.02 16 4 N -0.58 -13.21 1.53 -174.61 -0.27 -13.48 16 5 C -0.26 -7.10 9.90 -15.06 -0.15 -7.25 16 6 H 0.08 2.43 8.06 -52.48 -0.42 2.01 16 7 C 0.04 1.04 5.30 -17.43 -0.09 0.94 16 8 N -0.89 -26.41 13.97 55.49 0.78 -25.63 16 9 Si 0.86 20.51 25.10 -169.99 -4.27 16.25 16 10 H -0.29 -6.48 6.69 56.52 0.38 -6.10 16 11 H -0.30 -7.25 7.11 56.52 0.40 -6.84 16 12 H -0.26 -5.92 7.11 56.52 0.40 -5.52 16 13 C 0.12 2.44 4.97 -5.20 -0.03 2.41 16 14 C 0.48 9.61 7.69 -10.99 -0.08 9.52 16 15 O -0.49 -11.11 13.62 5.55 0.08 -11.04 16 16 N -0.67 -11.28 5.36 -9.70 -0.05 -11.34 16 17 C 0.21 3.48 6.45 -83.46 -0.54 2.94 16 18 C -0.14 -2.19 8.61 -39.91 -0.34 -2.53 16 19 C -0.05 -0.60 9.88 -40.13 -0.40 -1.00 16 20 C -0.12 -1.43 10.08 -39.17 -0.39 -1.82 16 21 C 0.10 1.48 7.16 -83.18 -0.60 0.88 16 22 N -0.60 -7.83 11.44 25.60 0.29 -7.54 16 23 S 0.77 7.95 23.60 -107.50 -2.54 5.42 16 24 N -0.59 -8.00 11.43 25.63 0.29 -7.71 16 25 C 0.06 0.96 7.08 -83.02 -0.59 0.37 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.05 1.12 8.06 -51.93 -0.42 0.70 16 32 H 0.04 0.70 8.05 -51.93 -0.42 0.28 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 35 H 0.09 1.84 3.50 -51.93 -0.18 1.66 16 36 H 0.41 5.94 8.80 -40.82 -0.36 5.59 16 37 H 0.17 3.04 5.72 -52.49 -0.30 2.74 16 38 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 341.32 15.07 5.14 5.14 Total: -1.00 -32.41 341.32 -8.21 -40.62 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -4.64 Total: 6.22 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -3.03 Total: 3.08 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: 1.04 Total: -65.69 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.27 Total: 16.25 kcal Atomic # 16 Polarization: 7.95 SS G_CDS: -2.54 Total: 5.42 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.41 -8.21 -40.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049981049.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.626 kcal (2) G-P(sol) polarization free energy of solvation -32.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds