Wall clock time and date at job start Tue Mar 31 2020 13:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.46975 * 2 1 4 4 N 1.46503 * 109.47241 * 180.02562 * 3 2 1 5 5 C 1.36941 * 119.99834 * 272.66378 * 4 3 2 6 6 H 1.08005 * 120.00075 * 320.39872 * 5 4 3 7 7 C 1.38805 * 120.00048 * 140.39947 * 5 4 3 8 8 N 1.31621 * 120.00112 * 158.27311 * 7 5 4 9 9 Si 1.86800 * 120.00204 * 338.26708 * 7 5 4 10 10 H 1.48501 * 109.46902 * 95.53438 * 9 7 5 11 11 H 1.48503 * 109.47334 * 215.53392 * 9 7 5 12 12 H 1.48500 * 109.47011 * 335.53656 * 9 7 5 13 13 C 1.46496 * 120.00282 * 92.66022 * 4 3 2 14 14 C 1.50696 * 109.47244 * 90.00254 * 13 4 3 15 15 O 1.21289 * 119.99778 * 359.97438 * 14 13 4 16 16 N 1.34776 * 120.00084 * 180.02562 * 14 13 4 17 17 C 1.39651 * 120.00088 * 184.65574 * 16 14 13 18 18 C 1.36194 * 120.11578 * 26.01049 * 17 16 14 19 19 C 1.39324 * 121.49522 * 179.75568 * 18 17 16 20 20 C 1.35563 * 121.66866 * 0.55569 * 19 18 17 21 21 C 1.41827 * 120.03589 * 359.45274 * 20 19 18 22 22 N 1.32328 * 130.97345 * 180.27107 * 21 20 19 23 23 S 1.55541 * 109.40649 * 179.97438 * 22 21 20 24 24 N 1.55548 * 100.18151 * 359.97438 * 23 22 21 25 25 C 1.32226 * 109.42136 * 0.02562 * 24 23 22 26 26 H 1.08993 * 109.47084 * 299.99584 * 1 2 3 27 27 H 1.09000 * 109.47210 * 60.00243 * 1 2 3 28 28 H 1.08998 * 109.46888 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47121 * 240.00069 * 2 1 3 30 30 H 1.08997 * 109.47020 * 120.00686 * 2 1 3 31 31 H 1.09006 * 109.47139 * 60.00081 * 3 2 1 32 32 H 1.09003 * 109.47671 * 299.99772 * 3 2 1 33 33 H 0.96998 * 120.00205 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.46821 * 330.00099 * 13 4 3 35 35 H 1.09005 * 109.47320 * 210.00371 * 13 4 3 36 36 H 0.97003 * 120.00027 * 4.65289 * 16 14 13 37 37 H 1.08002 * 119.25244 * 0.03847 * 18 17 16 38 38 H 1.08000 * 119.16665 * 180.30746 * 19 18 17 39 39 H 1.08006 * 119.98123 * 179.71933 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3872 1.1838 6 1 3.8364 1.9442 2.0388 7 6 5.3394 0.6154 1.2854 8 7 6.2227 0.8711 2.2270 9 14 5.6323 -0.7863 0.0859 10 1 6.4897 -0.3118 -1.0299 11 1 6.3089 -1.9059 0.7885 12 1 4.3311 -1.2552 -0.4547 13 6 4.2370 1.5016 -1.2682 14 6 4.4880 2.9411 -1.6367 15 8 4.0938 3.8302 -0.9120 16 7 5.1497 3.2406 -2.7720 17 6 5.4677 4.5684 -3.0654 18 6 5.6124 5.4747 -2.0591 19 6 5.9342 6.8052 -2.3187 20 6 6.1073 7.2620 -3.5832 21 6 5.9729 6.3761 -4.6826 22 7 6.0974 6.5827 -5.9837 23 16 5.8426 5.2507 -6.7453 24 7 5.5571 4.2997 -5.5479 25 6 5.6424 4.9791 -4.4168 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 7.0257 0.3316 2.2983 34 1 3.6476 1.0237 -2.0507 35 1 5.1895 0.9822 -1.1623 36 1 5.4050 2.5338 -3.3854 37 1 5.4790 5.1538 -1.0366 38 1 6.0447 7.4910 -1.4916 39 1 6.3520 8.3001 -3.7534 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049981049.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:09 Heat of formation + Delta-G solvation = 50.603088 kcal Electronic energy + Delta-G solvation = -24351.822455 eV Core-core repulsion = 20807.739093 eV Total energy + Delta-G solvation = -3544.083362 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.25033 -40.85209 -38.14466 -37.15459 -35.99654 -34.60647 -34.25456 -33.20628 -30.74565 -28.83184 -28.31504 -27.55048 -24.31006 -23.82449 -23.06043 -21.85991 -21.40623 -20.33825 -19.41517 -18.88475 -18.29273 -17.43619 -17.31372 -16.87818 -16.45674 -16.13408 -15.91773 -15.77345 -15.50063 -15.05188 -14.58254 -14.34023 -14.08222 -13.70408 -13.44547 -13.36535 -12.91814 -12.83017 -12.81657 -12.71773 -12.48206 -12.30855 -12.18281 -12.06996 -12.02222 -11.98302 -11.59241 -11.37209 -11.22198 -10.83751 -10.58599 -9.72645 -8.82641 -8.81703 -8.20498 -5.63834 -1.18302 0.30189 0.35650 0.61984 0.76700 1.26589 1.42456 1.53211 1.69669 1.91721 2.39932 2.57520 3.00192 3.16465 3.29768 3.74139 3.85463 3.94675 4.03621 4.22232 4.29669 4.32706 4.35006 4.47518 4.53789 4.65452 4.75418 4.84413 4.94170 5.17450 5.20912 5.25110 5.27124 5.37152 5.42293 5.49431 5.59363 5.90312 5.92729 6.19840 6.36911 6.89519 7.18219 7.55680 7.96795 8.99187 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.015428 B = 0.003678 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.486110 B = 7610.733243 C = 7951.594939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.137 4.137 3 C 0.153 3.847 4 N -0.589 5.589 5 C -0.255 4.255 6 H 0.029 0.971 7 C -0.018 4.018 8 N -0.946 5.946 9 Si 0.933 3.067 10 H -0.265 1.265 11 H -0.306 1.306 12 H -0.238 1.238 13 C 0.116 3.884 14 C 0.486 3.514 15 O -0.530 6.530 16 N -0.663 5.663 17 C 0.187 3.813 18 C -0.143 4.143 19 C -0.057 4.057 20 C -0.097 4.097 21 C 0.083 3.917 22 N -0.620 5.620 23 S 0.884 5.116 24 N -0.615 5.615 25 C 0.045 3.955 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.035 0.965 32 H 0.057 0.943 33 H 0.264 0.736 34 H 0.116 0.884 35 H 0.076 0.924 36 H 0.421 0.579 37 H 0.132 0.868 38 H 0.166 0.834 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.310 6.626 -20.332 21.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.177 4.177 3 C 0.029 3.971 4 N -0.309 5.309 5 C -0.385 4.385 6 H 0.046 0.954 7 C -0.215 4.215 8 N -0.589 5.589 9 Si 0.760 3.240 10 H -0.192 1.192 11 H -0.235 1.235 12 H -0.161 1.161 13 C -0.014 4.014 14 C 0.273 3.727 15 O -0.405 6.405 16 N -0.308 5.308 17 C 0.083 3.917 18 C -0.171 4.171 19 C -0.082 4.082 20 C -0.122 4.122 21 C -0.073 4.073 22 N -0.473 5.473 23 S 0.929 5.071 24 N -0.469 5.469 25 C -0.113 4.113 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.134 0.866 35 H 0.093 0.907 36 H 0.258 0.742 37 H 0.150 0.850 38 H 0.183 0.817 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.494 6.678 -21.889 23.020 hybrid contribution 0.708 -0.615 1.785 2.016 sum -1.786 6.063 -20.104 21.074 Atomic orbital electron populations 1.21660 0.94094 1.02034 1.01964 1.21992 0.96502 0.98111 1.01102 1.21038 0.81310 0.95221 0.99561 1.43829 1.02029 1.84250 1.00782 1.18498 1.07576 1.22388 0.90016 0.95356 1.26168 0.96365 0.99998 0.98974 1.70028 1.10106 1.40572 1.38222 0.85995 0.79364 0.79860 0.78823 1.19177 1.23473 1.16135 1.21521 0.99005 0.90233 0.90656 1.23182 0.75699 0.94684 0.79169 1.90580 1.49892 1.49626 1.50371 1.43784 1.56368 1.06719 1.23948 1.16882 1.00090 0.86171 0.88514 1.21059 1.02019 0.94505 0.99468 1.20857 0.95320 0.94329 0.97674 1.20463 1.03750 0.99725 0.88235 1.21269 1.02706 0.93215 0.90129 1.72082 1.29235 1.35315 1.10691 1.78010 1.34719 0.80636 1.13736 1.71845 1.27623 1.40724 1.06720 1.21012 1.06962 0.91594 0.91776 0.93028 0.91820 0.91879 0.92396 0.94020 0.94642 0.92451 0.92713 0.86642 0.90694 0.74168 0.85036 0.81686 0.81756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 9.91 71.98 0.71 -2.88 16 2 C -0.14 -4.65 6.25 30.59 0.19 -4.46 16 3 C 0.15 6.03 5.67 86.38 0.49 6.52 16 4 N -0.59 -27.39 1.53 -706.34 -1.08 -28.47 16 5 C -0.25 -14.53 9.90 84.03 0.83 -13.70 16 6 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 7 C -0.02 -1.05 5.30 84.86 0.45 -0.60 16 8 N -0.95 -58.90 13.97 21.65 0.30 -58.60 16 9 Si 0.93 42.74 25.10 68.60 1.72 44.46 16 10 H -0.27 -11.15 6.69 99.48 0.67 -10.48 16 11 H -0.31 -14.48 7.11 99.48 0.71 -13.78 16 12 H -0.24 -9.94 7.11 99.48 0.71 -9.23 16 13 C 0.12 4.60 4.97 85.63 0.43 5.03 16 14 C 0.49 19.50 7.69 87.66 0.67 20.17 16 15 O -0.53 -25.06 13.62 -3.06 -0.04 -25.10 16 16 N -0.66 -22.02 5.36 -302.98 -1.62 -23.64 16 17 C 0.19 6.09 6.45 38.44 0.25 6.34 16 18 C -0.14 -4.70 8.61 22.05 0.19 -4.51 16 19 C -0.06 -1.40 9.88 21.91 0.22 -1.19 16 20 C -0.10 -2.18 10.08 22.54 0.23 -1.96 16 21 C 0.08 2.16 7.16 41.97 0.30 2.46 16 22 N -0.62 -14.13 11.44 -72.93 -0.83 -14.96 16 23 S 0.88 14.98 23.60 -56.49 -1.33 13.65 16 24 N -0.61 -15.16 11.43 -72.81 -0.83 -15.99 16 25 C 0.05 1.29 7.08 42.11 0.30 1.59 16 26 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.04 1.50 8.06 -2.38 -0.02 1.48 16 32 H 0.06 2.03 8.05 -2.39 -0.02 2.01 16 33 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 34 H 0.12 3.58 8.07 -2.38 -0.02 3.56 16 35 H 0.08 3.14 3.50 -2.38 -0.01 3.14 16 36 H 0.42 11.70 8.80 -92.71 -0.82 10.88 16 37 H 0.13 5.23 5.72 -2.91 -0.02 5.21 16 38 H 0.17 3.04 8.06 -2.91 -0.02 3.01 16 39 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -75.02 341.32 1.78 -73.24 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.24 Total: 22.60 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 5.26 Total: 12.81 kcal Atomic # 7 Polarization: -137.59 SS G_CDS: -4.07 Total: -141.66 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.04 Total: -25.10 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.72 Total: 44.46 kcal Atomic # 16 Polarization: 14.98 SS G_CDS: -1.33 Total: 13.65 kcal Total: -75.02 1.78 -73.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049981049.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.844 kcal (2) G-P(sol) polarization free energy of solvation -75.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds