Wall clock time and date at job start Tue Mar 31 2020 13:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46894 * 2 1 4 4 N 1.46500 * 109.47038 * 179.97438 * 3 2 1 5 5 C 1.36823 * 120.00383 * 266.77557 * 4 3 2 6 6 H 1.07993 * 120.00223 * 139.64586 * 5 4 3 7 7 C 1.39049 * 119.99870 * 319.65222 * 5 4 3 8 8 N 1.31371 * 119.99885 * 342.58589 * 7 5 4 9 9 Si 1.86801 * 119.99806 * 162.58120 * 7 5 4 10 10 H 1.48494 * 109.47183 * 60.00161 * 9 7 5 11 11 H 1.48507 * 109.46777 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47279 * 299.99801 * 9 7 5 13 13 C 1.34783 * 120.00025 * 86.77967 * 4 3 2 14 14 O 1.21724 * 119.99715 * 4.37474 * 13 4 3 15 15 C 1.46717 * 119.99950 * 184.37206 * 13 4 3 16 16 C 1.36165 * 125.47218 * 257.81659 * 15 13 4 17 17 Cl 1.73604 * 126.15336 * 0.02562 * 16 15 13 18 18 C 1.41666 * 107.70038 * 180.02562 * 16 15 13 19 19 C 1.40099 * 133.33406 * 180.02562 * 18 16 15 20 20 C 1.36449 * 119.83615 * 179.97438 * 19 18 16 21 21 C 1.38926 * 120.61086 * 0.02562 * 20 19 18 22 22 C 1.37700 * 120.64053 * 0.02562 * 21 20 19 23 23 C 1.39208 * 119.81690 * 359.66471 * 22 21 20 24 24 N 1.37553 * 133.11167 * 179.57789 * 23 22 21 25 25 C 1.46503 * 125.60700 * 0.80487 * 24 23 22 26 26 H 1.09005 * 109.47060 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47148 * 299.99632 * 1 2 3 28 28 H 1.08999 * 109.47179 * 60.00287 * 1 2 3 29 29 H 1.09003 * 109.47636 * 240.00163 * 2 1 3 30 30 H 1.08999 * 109.47179 * 119.99713 * 2 1 3 31 31 H 1.08998 * 109.47375 * 60.00167 * 3 2 1 32 32 H 1.08999 * 109.47386 * 300.00184 * 3 2 1 33 33 H 0.96998 * 119.99834 * 180.02562 * 8 7 5 34 34 H 1.08008 * 120.08165 * 0.02562 * 19 18 16 35 35 H 1.08008 * 119.69248 * 179.97438 * 20 19 18 36 36 H 1.07997 * 119.67980 * 179.97438 * 21 20 19 37 37 H 1.07995 * 120.08766 * 180.02562 * 22 21 20 38 38 H 1.09005 * 109.47175 * 264.68168 * 25 24 23 39 39 H 1.08991 * 109.47204 * 24.68411 * 25 24 23 40 40 H 1.08998 * 109.46818 * 144.68946 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1886 1.5094 1.1839 6 1 5.0758 0.9111 1.3295 7 6 3.7411 2.3477 2.1990 8 7 2.8925 3.3131 1.9274 9 14 4.3463 2.1009 3.9490 10 1 5.8234 2.2482 3.9872 11 1 3.7239 3.1165 4.8358 12 1 3.9721 0.7415 4.4151 13 6 4.1794 1.3769 -1.1645 14 8 3.5738 1.3978 -2.2202 15 6 5.6433 1.2801 -1.1603 16 6 6.5037 2.3051 -1.4116 17 17 6.0645 3.9417 -1.7893 18 6 7.8218 1.7960 -1.3094 19 6 9.0896 2.3727 -1.4604 20 6 10.2074 1.6077 -1.2953 21 6 10.1013 0.2592 -0.9786 22 6 8.8665 -0.3308 -0.8259 23 6 7.7115 0.4303 -0.9830 24 7 6.3711 0.1321 -0.9030 25 6 5.8071 -1.1829 -0.5882 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 2.5805 3.8980 2.6355 34 1 9.1820 3.4203 -1.7062 35 1 11.1836 2.0546 -1.4127 36 1 10.9960 -0.3323 -0.8517 37 1 8.7945 -1.3797 -0.5793 38 1 5.5723 -1.7086 -1.5138 39 1 6.5319 -1.7615 -0.0156 40 1 4.8974 -1.0569 -0.0011 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060556026.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:53 Heat of formation + Delta-G solvation = 5.154816 kcal Electronic energy + Delta-G solvation = -25243.282967 eV Core-core repulsion = 21662.892362 eV Total energy + Delta-G solvation = -3580.390604 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.103 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.56993 -40.36528 -37.87123 -37.41189 -37.07535 -34.60878 -33.82231 -33.26093 -31.26102 -30.20897 -27.78627 -27.22468 -26.68440 -24.35050 -22.58229 -22.51752 -21.73264 -20.94398 -19.21668 -18.14666 -17.95374 -17.29435 -16.78213 -16.44628 -16.20157 -15.73441 -15.70683 -15.27476 -15.04405 -14.85580 -14.62053 -14.33907 -14.09376 -13.96944 -13.47322 -13.40089 -13.20485 -13.05028 -12.93562 -12.72045 -12.65905 -12.47417 -12.17443 -12.04187 -11.98832 -11.97492 -11.69564 -11.56144 -11.14452 -10.72984 -10.47756 -9.57782 -9.10835 -8.56068 -8.37392 -6.18638 0.01287 0.69757 1.02402 1.34654 1.39448 1.42571 1.50909 1.63274 2.09276 2.30513 2.84721 2.96828 2.97850 3.71051 3.83003 3.92853 4.16291 4.18053 4.26784 4.29790 4.33133 4.45049 4.51392 4.58766 4.61640 4.64131 4.77243 4.85909 4.92107 5.06183 5.11104 5.20202 5.31881 5.36878 5.48656 5.50192 5.58540 5.69611 5.72819 5.89908 6.07578 6.28039 6.31783 6.99343 7.35926 7.81224 8.65216 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.012335 B = 0.005512 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.390516 B = 5078.895402 C = 5407.665095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.122 4.122 3 C 0.116 3.884 4 N -0.417 5.417 5 C -0.353 4.353 6 H 0.087 0.913 7 C 0.014 3.986 8 N -0.882 5.882 9 Si 0.976 3.024 10 H -0.273 1.273 11 H -0.279 1.279 12 H -0.256 1.256 13 C 0.518 3.482 14 O -0.619 6.619 15 C 0.087 3.913 16 C -0.110 4.110 17 Cl -0.055 7.055 18 C -0.123 4.123 19 C -0.084 4.084 20 C -0.139 4.139 21 C -0.088 4.088 22 C -0.127 4.127 23 C 0.090 3.910 24 N -0.459 5.459 25 C 0.074 3.926 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.042 0.958 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.033 0.967 33 H 0.275 0.725 34 H 0.125 0.875 35 H 0.155 0.845 36 H 0.167 0.833 37 H 0.151 0.849 38 H 0.081 0.919 39 H 0.122 0.878 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.109 -8.827 0.102 13.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 C -0.007 4.007 4 N -0.133 5.133 5 C -0.481 4.481 6 H 0.105 0.895 7 C -0.191 4.191 8 N -0.518 5.518 9 Si 0.799 3.201 10 H -0.198 1.198 11 H -0.204 1.204 12 H -0.181 1.181 13 C 0.305 3.695 14 O -0.507 6.507 15 C -0.026 4.026 16 C -0.144 4.144 17 Cl -0.027 7.027 18 C -0.128 4.128 19 C -0.102 4.102 20 C -0.157 4.157 21 C -0.107 4.107 22 C -0.147 4.147 23 C -0.017 4.017 24 N -0.143 5.143 25 C -0.066 4.066 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.143 0.857 35 H 0.173 0.827 36 H 0.184 0.816 37 H 0.168 0.832 38 H 0.099 0.901 39 H 0.140 0.860 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.412 -8.845 -0.233 12.918 hybrid contribution -0.438 0.853 0.559 1.110 sum 8.974 -7.992 0.326 12.021 Atomic orbital electron populations 1.21612 0.93447 1.02556 1.01788 1.21720 0.97424 0.96055 1.00845 1.21513 0.80245 0.97023 1.01943 1.43588 1.05466 1.60015 1.04194 1.19426 1.12312 1.25479 0.90893 0.89510 1.26194 0.96436 0.92594 1.03867 1.69988 1.32074 1.14789 1.34917 0.85250 0.78586 0.78900 0.77317 1.19768 1.20404 1.18073 1.17699 0.84927 0.82356 0.84506 1.90661 1.69395 1.58115 1.32484 1.19787 0.91908 0.87085 1.03805 1.19985 0.93041 0.86082 1.15311 1.98274 1.93216 1.17979 1.93211 1.18113 0.92293 0.93789 1.08599 1.20544 0.89969 1.00321 0.99399 1.20986 0.98429 0.94504 1.01818 1.21311 0.96959 0.94986 0.97455 1.20421 0.88857 1.00262 1.05197 1.18669 0.84377 0.94184 1.04490 1.44102 1.03919 1.08427 1.57807 1.22247 1.01159 0.80392 1.02764 0.90588 0.92421 0.93090 0.93934 0.91829 0.88861 0.94816 0.91520 0.85733 0.82703 0.81577 0.83165 0.90058 0.85998 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.20 9.91 71.98 0.71 -3.48 16 2 C -0.12 -4.72 6.24 30.59 0.19 -4.53 16 3 C 0.12 5.55 4.96 86.38 0.43 5.98 16 4 N -0.42 -21.30 2.50 -640.01 -1.60 -22.90 16 5 C -0.35 -17.89 8.60 84.11 0.72 -17.16 16 6 H 0.09 4.31 7.23 -2.91 -0.02 4.29 16 7 C 0.01 0.70 5.00 84.96 0.42 1.13 16 8 N -0.88 -46.73 11.46 21.68 0.25 -46.48 16 9 Si 0.98 39.31 29.59 68.60 2.03 41.34 16 10 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 11 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 12 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 13 C 0.52 26.99 6.60 86.46 0.57 27.56 16 14 O -0.62 -35.49 16.72 -4.42 -0.07 -35.56 16 15 C 0.09 4.07 5.03 39.85 0.20 4.27 16 16 C -0.11 -4.99 6.73 22.63 0.15 -4.84 16 17 Cl -0.06 -2.49 29.04 -2.72 -0.08 -2.57 16 18 C -0.12 -4.71 6.16 -21.34 -0.13 -4.84 16 19 C -0.08 -2.55 10.06 22.30 0.22 -2.33 16 20 C -0.14 -3.12 9.97 22.02 0.22 -2.90 16 21 C -0.09 -1.76 10.02 22.31 0.22 -1.54 16 22 C -0.13 -3.11 9.90 22.38 0.22 -2.89 16 23 C 0.09 3.10 6.81 39.12 0.27 3.37 16 24 N -0.46 -17.47 3.12 -526.18 -1.64 -19.11 16 25 C 0.07 2.17 10.84 127.77 1.39 3.55 16 26 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.09 4.71 5.61 -2.39 -0.01 4.69 16 32 H 0.03 1.74 7.46 -2.39 -0.02 1.72 16 33 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 34 H 0.12 3.57 8.06 -2.91 -0.02 3.54 16 35 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 36 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 37 H 0.15 2.66 7.92 -2.91 -0.02 2.64 16 38 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 39 H 0.12 2.52 7.88 -2.39 -0.02 2.50 16 40 H 0.07 2.40 7.84 -2.39 -0.02 2.38 16 Total: -1.00 -69.03 355.85 5.75 -63.28 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 1.05 Total: 20.65 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 5.81 Total: 1.36 kcal Atomic # 7 Polarization: -85.49 SS G_CDS: -2.99 Total: -88.49 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -0.07 Total: -35.56 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Atomic # 17 Polarization: -2.49 SS G_CDS: -0.08 Total: -2.57 kcal Total: -69.03 5.75 -63.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060556026.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.432 kcal (2) G-P(sol) polarization free energy of solvation -69.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds