Wall clock time and date at job start Tue Mar 31 2020 13:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47289 * 2 1 4 4 N 1.46501 * 109.46862 * 179.97438 * 3 2 1 5 5 C 1.37098 * 120.00311 * 264.74771 * 4 3 2 6 6 H 1.08003 * 120.00136 * 146.16754 * 5 4 3 7 7 C 1.38953 * 119.99713 * 326.16608 * 5 4 3 8 8 N 1.31405 * 120.00487 * 337.68367 * 7 5 4 9 9 Si 1.86801 * 119.99802 * 157.68113 * 7 5 4 10 10 H 1.48510 * 109.46933 * 60.00071 * 9 7 5 11 11 H 1.48496 * 109.47234 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47234 * 300.00748 * 9 7 5 13 13 C 1.34774 * 119.99813 * 84.75434 * 4 3 2 14 14 O 1.21294 * 120.00090 * 180.02562 * 13 4 3 15 15 C 1.50699 * 120.00149 * 359.97438 * 13 4 3 16 16 C 1.50698 * 109.47513 * 180.02562 * 15 13 4 17 17 C 1.34220 * 126.50516 * 265.00879 * 16 15 13 18 18 N 1.36865 * 109.93396 * 179.97438 * 17 16 15 19 19 H 0.96995 * 125.06725 * 180.02562 * 18 17 16 20 20 C 1.37696 * 109.86169 * 359.97438 * 18 17 16 21 21 C 1.39123 * 133.48107 * 179.70909 * 20 18 17 22 22 C 1.37852 * 119.76456 * 179.86274 * 21 20 18 23 23 Cl 1.73603 * 119.68232 * 180.22299 * 22 21 20 24 24 C 1.38928 * 120.63572 * 0.43984 * 22 21 20 25 25 C 1.36609 * 120.52174 * 359.80391 * 24 22 21 26 26 C 1.39632 * 119.77958 * 359.97374 * 25 24 22 27 27 H 1.08993 * 109.47370 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46988 * 300.00296 * 1 2 3 29 29 H 1.08999 * 109.47166 * 59.99784 * 1 2 3 30 30 H 1.08998 * 109.46929 * 240.00035 * 2 1 3 31 31 H 1.08999 * 109.47166 * 120.00216 * 2 1 3 32 32 H 1.08998 * 109.47106 * 60.00143 * 3 2 1 33 33 H 1.08999 * 109.47193 * 300.00199 * 3 2 1 34 34 H 0.96997 * 120.00406 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46801 * 60.00453 * 15 13 4 36 36 H 1.08995 * 109.47344 * 300.00571 * 15 13 4 37 37 H 1.08003 * 125.03302 * 359.97307 * 17 16 15 38 38 H 1.07998 * 120.11486 * 0.29949 * 21 20 18 39 39 H 1.08001 * 119.74010 * 179.78161 * 24 22 21 40 40 H 1.08002 * 120.11671 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1901 1.5512 1.1832 6 1 5.1329 1.0398 1.3101 7 6 3.6715 2.3194 2.2183 8 7 2.8004 3.2686 1.9595 9 14 4.2125 2.0028 3.9780 10 1 5.6806 2.1979 4.0872 11 1 3.5179 2.9493 4.8874 12 1 3.8688 0.6091 4.3584 13 6 4.1794 1.3354 -1.1614 14 8 5.3923 1.3349 -1.1609 15 6 3.4264 1.2154 -2.4613 16 6 4.4061 1.1099 -3.6015 17 6 4.8539 2.1186 -4.3653 18 7 5.7329 1.6417 -5.2997 19 1 6.1880 2.1825 -5.9640 20 6 5.8758 0.2798 -5.1554 21 6 6.6227 -0.6812 -5.8294 22 6 6.5541 -2.0008 -5.4366 23 17 7.4915 -3.1972 -6.2753 24 6 5.7386 -2.3830 -4.3788 25 6 4.9933 -1.4559 -3.7071 26 6 5.0515 -0.1131 -4.0855 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 2.4381 3.8047 2.6822 35 1 2.7996 2.0962 -2.6007 36 1 2.7999 0.3238 -2.4373 37 1 4.5637 3.1534 -4.2584 38 1 7.2594 -0.3933 -6.6529 39 1 5.6932 -3.4215 -4.0854 40 1 4.3619 -1.7603 -2.8854 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068110372.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:23 Heat of formation + Delta-G solvation = -5.154236 kcal Electronic energy + Delta-G solvation = -24265.817858 eV Core-core repulsion = 20684.980220 eV Total energy + Delta-G solvation = -3580.837638 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.26105 -40.25963 -38.40096 -37.03456 -36.88567 -34.63487 -33.77743 -32.91658 -31.21324 -30.19768 -28.50304 -27.21449 -25.90993 -23.98230 -22.81618 -22.44164 -21.51787 -19.92337 -18.78987 -18.71090 -17.72175 -17.48665 -16.83355 -16.65630 -16.01270 -15.77594 -15.43317 -15.33875 -15.29896 -14.83187 -14.36937 -14.22255 -13.93460 -13.73588 -13.65119 -13.34702 -13.27260 -13.04259 -12.89067 -12.56087 -12.48285 -12.18045 -12.12108 -12.03476 -11.92135 -11.91306 -11.76587 -11.44237 -10.81237 -10.60389 -10.17077 -9.36668 -9.15746 -8.58956 -8.28079 -5.96594 0.02086 0.51808 1.10158 1.39659 1.42116 1.51245 1.67984 2.17146 2.29037 2.34314 2.77936 3.06548 3.30285 3.72966 3.87947 4.07728 4.13790 4.19665 4.30167 4.34111 4.42931 4.52398 4.57136 4.66532 4.69207 4.74603 4.81618 4.90190 5.05960 5.13045 5.21343 5.25380 5.35767 5.46550 5.47396 5.53200 5.61162 5.68714 5.78419 6.07207 6.27722 6.63406 6.71490 7.27979 7.59326 8.20823 8.72646 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.016612 B = 0.003234 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.095589 B = 8656.138362 C = 8723.955864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 C 0.103 3.897 4 N -0.458 5.458 5 C -0.339 4.339 6 H 0.058 0.942 7 C 0.006 3.994 8 N -0.886 5.886 9 Si 0.972 3.028 10 H -0.280 1.280 11 H -0.270 1.270 12 H -0.267 1.267 13 C 0.450 3.550 14 O -0.624 6.624 15 C -0.048 4.048 16 C -0.168 4.168 17 C 0.069 3.931 18 N -0.578 5.578 19 H 0.433 0.567 20 C 0.091 3.909 21 C -0.118 4.118 22 C -0.026 4.026 23 Cl -0.064 7.064 24 C -0.142 4.142 25 C -0.071 4.071 26 C -0.112 4.112 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.040 0.960 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.273 0.727 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.197 0.803 38 H 0.153 0.847 39 H 0.146 0.854 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.028 -5.907 -15.289 16.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C -0.021 4.021 4 N -0.177 5.177 5 C -0.467 4.467 6 H 0.075 0.925 7 C -0.196 4.196 8 N -0.524 5.524 9 Si 0.796 3.204 10 H -0.206 1.206 11 H -0.195 1.195 12 H -0.192 1.192 13 C 0.240 3.760 14 O -0.510 6.510 15 C -0.088 4.088 16 C -0.175 4.175 17 C -0.057 4.057 18 N -0.182 5.182 19 H 0.273 0.727 20 C -0.017 4.017 21 C -0.139 4.139 22 C -0.053 4.053 23 Cl -0.035 7.035 24 C -0.162 4.162 25 C -0.089 4.089 26 C -0.117 4.117 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.125 0.875 36 H 0.117 0.883 37 H 0.214 0.786 38 H 0.170 0.830 39 H 0.164 0.836 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.428 -5.739 -15.331 16.432 hybrid contribution 0.744 0.223 0.915 1.200 sum -0.685 -5.516 -14.416 15.450 Atomic orbital electron populations 1.21627 0.93376 1.02282 1.02202 1.21883 0.97338 0.96894 1.01020 1.21742 0.80037 0.96544 1.03738 1.43785 1.05973 1.63385 1.04517 1.19286 1.06718 1.29462 0.91244 0.92452 1.25918 0.97322 0.93116 1.03277 1.69964 1.31384 1.17014 1.34002 0.85329 0.78229 0.78664 0.78154 1.20576 1.19499 1.19206 1.21258 0.87961 0.80720 0.86101 1.90483 1.16462 1.56316 1.87716 1.19881 0.96139 1.04556 0.88261 1.19900 1.05180 0.92222 1.00206 1.21986 0.93203 0.99507 0.91049 1.41565 1.40017 1.05098 1.31558 0.72661 1.18094 1.00191 0.85104 0.98303 1.19913 1.02044 0.89626 1.02342 1.20424 0.98252 0.89680 0.96976 1.98344 1.71780 1.56157 1.77230 1.20614 0.98354 1.00807 0.96434 1.20338 0.98871 0.91025 0.98700 1.19425 1.00300 0.94109 0.97845 0.91389 0.93288 0.91328 0.92182 0.94093 0.89338 0.91497 0.91781 0.87509 0.88253 0.78610 0.82977 0.83616 0.85699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.91 71.98 0.71 -2.87 16 2 C -0.13 -4.58 6.17 30.59 0.19 -4.39 16 3 C 0.10 4.30 4.72 86.38 0.41 4.71 16 4 N -0.46 -23.25 2.56 -635.54 -1.63 -24.88 16 5 C -0.34 -19.39 8.98 84.04 0.75 -18.64 16 6 H 0.06 3.57 7.70 -2.91 -0.02 3.55 16 7 C 0.01 0.32 4.92 84.93 0.42 0.74 16 8 N -0.89 -47.19 11.33 21.66 0.25 -46.94 16 9 Si 0.97 42.68 29.61 68.60 2.03 44.71 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 13 C 0.45 22.06 7.59 87.66 0.66 22.73 16 14 O -0.62 -36.25 15.86 -3.07 -0.05 -36.30 16 15 C -0.05 -1.72 4.84 29.10 0.14 -1.58 16 16 C -0.17 -5.73 4.81 -18.62 -0.09 -5.82 16 17 C 0.07 1.91 11.73 82.99 0.97 2.88 16 18 N -0.58 -13.72 6.07 -187.60 -1.14 -14.86 16 19 H 0.43 6.67 8.96 -92.71 -0.83 5.84 16 20 C 0.09 2.62 7.28 39.03 0.28 2.90 16 21 C -0.12 -2.93 9.84 22.39 0.22 -2.71 16 22 C -0.03 -0.65 6.31 22.34 0.14 -0.51 16 23 Cl -0.06 -1.39 28.93 -2.72 -0.08 -1.46 16 24 C -0.14 -3.89 9.75 22.05 0.21 -3.67 16 25 C -0.07 -2.25 10.05 22.23 0.22 -2.02 16 26 C -0.11 -3.78 6.35 -20.19 -0.13 -3.90 16 27 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.93 6.59 -2.39 -0.02 1.92 16 31 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.09 4.18 5.34 -2.39 -0.01 4.17 16 33 H 0.07 2.47 6.66 -2.39 -0.02 2.45 16 34 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 35 H 0.11 3.31 7.41 -2.39 -0.02 3.30 16 36 H 0.10 3.19 6.53 -2.39 -0.02 3.17 16 37 H 0.20 4.18 8.06 -2.91 -0.02 4.16 16 38 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 39 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 40 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -72.32 351.23 4.76 -67.56 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.25 Total: 24.34 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 5.13 Total: -12.17 kcal Atomic # 7 Polarization: -84.16 SS G_CDS: -2.52 Total: -86.68 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -0.05 Total: -36.30 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.46 kcal Total: -72.32 4.76 -67.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068110372.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.407 kcal (2) G-P(sol) polarization free energy of solvation -72.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds