Wall clock time and date at job start Tue Mar 31 2020 14:04:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09004 * 109.47260 * 2 1
4 4 C 1.50701 * 109.47129 * 240.00352 * 2 1 3
5 5 H 1.07994 * 119.99814 * 240.00114 * 4 2 1
6 6 C 1.37872 * 120.00147 * 59.99525 * 4 2 1
7 7 N 1.31519 * 120.00224 * 0.02562 * 6 4 2
8 8 Si 1.86797 * 120.00144 * 180.02562 * 6 4 2
9 9 H 1.48505 * 109.47323 * 90.00115 * 8 6 4
10 10 H 1.48502 * 109.47423 * 210.00170 * 8 6 4
11 11 H 1.48497 * 109.47319 * 330.00232 * 8 6 4
12 12 N 1.46496 * 109.47257 * 119.99969 * 2 1 3
13 13 C 1.46501 * 120.00002 * 60.00182 * 12 2 1
14 14 C 1.34775 * 120.00256 * 239.99984 * 12 2 1
15 15 O 1.21596 * 119.99842 * 3.32353 * 14 12 2
16 16 C 1.47525 * 120.00053 * 183.32067 * 14 12 2
17 17 C 1.36603 * 125.76552 * 173.47491 * 16 14 12
18 18 N 1.34819 * 106.83529 * 179.97438 * 17 16 14
19 19 C 1.46497 * 126.59446 * 180.02562 * 18 17 16
20 20 C 1.50702 * 109.47063 * 125.00503 * 19 18 17
21 21 C 1.33387 * 125.20350 * 89.71918 * 20 19 18
22 22 C 1.38425 * 114.91932 * 179.85915 * 21 20 19
23 23 C 1.33386 * 114.91824 * 0.43020 * 22 21 20
24 24 S 1.75876 * 109.59652 * 359.77192 * 23 22 21
25 25 N 1.40207 * 106.80896 * 0.26735 * 18 17 16
26 26 N 1.28760 * 108.37105 * 359.54743 * 25 18 17
27 27 H 1.09004 * 109.47260 * 179.97438 * 1 2 3
28 28 H 1.08998 * 109.47179 * 300.00113 * 1 2 3
29 29 H 1.09006 * 109.47216 * 59.99843 * 1 2 3
30 30 H 0.96992 * 120.00227 * 180.02562 * 7 6 4
31 31 H 1.09004 * 109.47239 * 264.10703 * 13 12 2
32 32 H 1.08998 * 109.47208 * 24.10608 * 13 12 2
33 33 H 1.08997 * 109.47134 * 144.10799 * 13 12 2
34 34 H 1.07991 * 126.58438 * 359.97438 * 17 16 14
35 35 H 1.09000 * 109.47185 * 5.00159 * 19 18 17
36 36 H 1.09005 * 109.46943 * 245.00095 * 19 18 17
37 37 H 1.08002 * 122.54033 * 0.02562 * 21 20 19
38 38 H 1.08000 * 122.53592 * 180.19683 * 22 21 20
39 39 H 1.08003 * 125.19649 * 179.79353 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0323 -0.7103 -1.2305
5 1 2.6532 -1.5884 -1.1314
6 6 1.6992 -0.2393 -2.4827
7 7 0.9434 0.8303 -2.6034
8 14 2.3213 -1.1202 -4.0080
9 1 1.3427 -2.1616 -4.4119
10 1 2.4865 -0.1412 -5.1123
11 1 3.6292 -1.7582 -3.7123
12 7 2.0183 -0.6906 1.1961
13 6 1.6645 -2.0932 1.4280
14 6 2.7932 -0.0356 2.0833
15 8 3.0372 1.1447 1.9224
16 6 3.3453 -0.7507 3.2496
17 6 4.2395 -0.2418 4.1482
18 7 4.4813 -1.2133 5.0512
19 6 5.3782 -1.1282 6.2065
20 6 4.6172 -1.4763 7.4598
21 6 4.4910 -2.7036 7.9669
22 6 3.7464 -2.7798 9.1313
23 6 3.2606 -1.6157 9.5649
24 16 3.7535 -0.3276 8.4736
25 7 3.7137 -2.3225 4.6689
26 7 3.0531 -2.0126 3.6079
27 1 -0.3634 -1.0277 -0.0005
28 1 -0.3633 0.5138 0.8900
29 1 -0.3634 0.5139 -0.8900
30 1 0.7088 1.1614 -3.4843
31 1 0.7974 -2.1451 2.0864
32 1 1.4275 -2.5701 0.4769
33 1 2.5052 -2.6079 1.8930
34 1 4.6700 0.7485 4.1374
35 1 5.7695 -0.1142 6.2887
36 1 6.2045 -1.8272 6.0772
37 1 4.9382 -3.5716 7.5054
38 1 3.5691 -3.7118 9.6474
39 1 2.6571 -1.4843 10.4509
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000080027971.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:04:58
Heat of formation + Delta-G solvation = 115.233662 kcal
Electronic energy + Delta-G solvation = -23798.098805 eV
Core-core repulsion = 20256.818035 eV
Total energy + Delta-G solvation = -3541.280770 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 320.105 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-42.04822 -38.72459 -38.28175 -35.30408 -34.97097 -32.75312 -31.21653 -30.52185
-29.00200 -26.98501 -25.94962 -25.15723 -23.87839 -23.40835 -21.98549 -20.85241
-19.74368 -19.00354 -17.62580 -17.07994 -16.38419 -16.23095 -15.82630 -15.46616
-15.33726 -14.61327 -14.36063 -14.15018 -13.86266 -13.38765 -13.19471 -13.02477
-12.88168 -12.43175 -12.28762 -12.24845 -11.96863 -11.61691 -11.51592 -11.19958
-11.04585 -10.77949 -10.65957 -10.46081 -10.29392 -10.15516 -10.11041 -9.27472
-9.17489 -9.06654 -9.02013 -8.85841 -8.37860 -7.48359 -6.02036 -4.09510
0.42357 1.14519 1.29442 1.55600 1.99835 2.10092 2.50569 3.30972
3.37459 3.41000 3.84066 3.95747 4.08551 4.23651 4.44433 4.46902
4.66841 4.76052 4.99060 5.09176 5.16703 5.21705 5.29086 5.38173
5.67905 5.82277 5.87220 6.03837 6.28335 6.35990 6.39663 6.74970
6.86179 6.95179 7.14582 7.50540 7.59255 7.77972 8.05267 8.15106
8.25490 8.59467 8.87156 9.07792 9.56524 11.03369
Molecular weight = 320.10amu
Principal moments of inertia in cm(-1)
A = 0.030196 B = 0.002624 C = 0.002589
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 927.037304 B =10667.024025 C =10812.244374
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.258 3.742
3 H 0.064 0.936
4 C -0.524 4.524
5 H 0.061 0.939
6 C 0.064 3.936
7 N -0.888 5.888
8 Si 0.899 3.101
9 H -0.280 1.280
10 H -0.286 1.286
11 H -0.274 1.274
12 N -0.572 5.572
13 C 0.081 3.919
14 C 0.584 3.416
15 O -0.555 6.555
16 C -0.080 4.080
17 C 0.082 3.918
18 N -0.366 5.366
19 C 0.201 3.799
20 C -0.218 4.218
21 C -0.091 4.091
22 C -0.140 4.140
23 C -0.200 4.200
24 S 0.116 5.884
25 N -0.070 5.070
26 N -0.200 5.200
27 H 0.031 0.969
28 H 0.011 0.989
29 H 0.094 0.906
30 H 0.263 0.737
31 H 0.042 0.958
32 H 0.075 0.925
33 H 0.080 0.920
34 H 0.202 0.798
35 H 0.113 0.887
36 H 0.115 0.885
37 H 0.145 0.855
38 H 0.144 0.856
39 H 0.166 0.834
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.225 -5.182 24.174 26.056
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C 0.158 3.842
3 H 0.082 0.918
4 C -0.563 4.563
5 H 0.079 0.921
6 C -0.138 4.138
7 N -0.527 5.527
8 Si 0.727 3.273
9 H -0.206 1.206
10 H -0.211 1.211
11 H -0.199 1.199
12 N -0.301 5.301
13 C -0.063 4.063
14 C 0.369 3.631
15 O -0.434 6.434
16 C -0.218 4.218
17 C -0.073 4.073
18 N -0.153 5.153
19 C 0.078 3.922
20 C -0.336 4.336
21 C -0.124 4.124
22 C -0.171 4.171
23 C -0.336 4.336
24 S 0.380 5.620
25 N -0.049 5.049
26 N -0.074 5.074
27 H 0.050 0.950
28 H 0.031 0.969
29 H 0.112 0.888
30 H 0.073 0.927
31 H 0.060 0.940
32 H 0.093 0.907
33 H 0.098 0.902
34 H 0.219 0.781
35 H 0.132 0.868
36 H 0.133 0.867
37 H 0.163 0.837
38 H 0.161 0.839
39 H 0.184 0.816
Dipole moment (debyes) X Y Z Total
from point charges 7.640 -4.304 24.226 25.764
hybrid contribution 0.746 -1.093 -0.811 1.552
sum 8.386 -5.396 23.414 25.449
Atomic orbital electron populations
1.22080 0.98005 0.99571 1.00792 1.19010 0.91072 0.94486 0.79664
0.91792 1.21337 1.31746 1.12985 0.90206 0.92124 1.24884 0.94993
0.94982 0.98914 1.69885 1.36467 1.22607 1.23701 0.86487 0.79218
0.79282 0.82359 1.20606 1.21147 1.19935 1.48104 1.47135 1.12292
1.22581 1.21930 1.00541 0.82387 1.01461 1.16846 0.79621 0.85786
0.80890 1.90746 1.61736 1.14875 1.76006 1.21891 1.05054 0.92617
1.02285 1.23348 0.98182 0.96071 0.89744 1.50494 1.33256 1.11159
1.20367 1.20180 0.89233 1.04952 0.77817 1.24291 1.09363 0.97714
1.02198 1.20223 0.99340 0.97027 0.95765 1.20217 1.00374 0.98966
0.97511 1.25754 1.07133 0.96048 1.04688 1.84425 1.48372 1.10852
1.18332 1.81961 1.06397 1.06765 1.09818 1.74849 1.15387 1.12180
1.04936 0.95030 0.96945 0.88797 0.92723 0.93970 0.90667 0.90197
0.78118 0.86847 0.86722 0.83709 0.83860 0.81602
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.64 8.97 37.16 0.33 -3.31 16
2 C 0.26 6.82 2.63 -69.08 -0.18 6.64 16
3 H 0.06 1.92 6.90 -51.93 -0.36 1.56 16
4 C -0.52 -14.53 7.95 -34.44 -0.27 -14.81 16
5 H 0.06 1.67 7.43 -52.49 -0.39 1.28 16
6 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16
7 N -0.89 -25.44 11.32 55.43 0.63 -24.81 16
8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16
9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16
11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16
12 N -0.57 -13.27 2.75 -176.50 -0.49 -13.76 16
13 C 0.08 1.61 8.52 59.85 0.51 2.12 16
14 C 0.58 13.01 7.67 -12.48 -0.10 12.91 16
15 O -0.55 -13.74 16.20 5.28 0.09 -13.65 16
16 C -0.08 -1.43 6.69 -83.55 -0.56 -1.99 16
17 C 0.08 1.12 11.28 -16.83 -0.19 0.93 16
18 N -0.37 -4.36 3.68 -62.24 -0.23 -4.59 16
19 C 0.20 1.48 7.03 -5.19 -0.04 1.44 16
20 C -0.22 -1.80 5.97 -36.00 -0.21 -2.02 16
21 C -0.09 -0.73 10.05 -41.21 -0.41 -1.15 16
22 C -0.14 -1.03 10.18 -41.21 -0.42 -1.45 16
23 C -0.20 -1.45 11.23 29.04 0.33 -1.13 16
24 S 0.12 0.95 23.33 -107.50 -2.51 -1.56 16
25 N -0.07 -1.05 13.64 60.35 0.82 -0.23 16
26 N -0.20 -3.48 8.81 32.85 0.29 -3.20 16
27 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16
28 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16
29 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16
30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16
31 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16
32 H 0.07 1.53 7.12 -51.93 -0.37 1.16 16
33 H 0.08 1.51 5.31 -51.93 -0.28 1.23 16
34 H 0.20 2.13 8.06 -52.49 -0.42 1.71 16
35 H 0.11 0.53 8.08 -51.93 -0.42 0.11 16
36 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16
37 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16
38 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16
39 H 0.17 0.84 8.06 -52.48 -0.42 0.42 16
LS Contribution 347.61 15.07 5.24 5.24
Total: -1.00 -33.64 347.61 -7.11 -40.76
By element:
Atomic # 1 Polarization: 4.17 SS G_CDS: -4.62 Total: -0.45 kcal
Atomic # 6 Polarization: 1.20 SS G_CDS: -1.31 Total: -0.11 kcal
Atomic # 7 Polarization: -47.61 SS G_CDS: 1.03 Total: -46.59 kcal
Atomic # 8 Polarization: -13.74 SS G_CDS: 0.09 Total: -13.65 kcal
Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal
Atomic # 16 Polarization: 0.95 SS G_CDS: -2.51 Total: -1.56 kcal
Total LS contribution 5.24 Total: 5.24 kcal
Total: -33.64 -7.11 -40.76 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000080027971.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 155.989 kcal
(2) G-P(sol) polarization free energy of solvation -33.645 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.345 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.756 kcal
(6) G-S(sol) free energy of system = (1) + (5) 115.234 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds