Wall clock time and date at job start Tue Mar 31 2020 14:04:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09004 * 109.47260 * 2 1
4 4 C 1.50701 * 109.47129 * 240.00352 * 2 1 3
5 5 H 1.07994 * 119.99814 * 240.00114 * 4 2 1
6 6 C 1.37872 * 120.00147 * 59.99525 * 4 2 1
7 7 N 1.31519 * 120.00224 * 0.02562 * 6 4 2
8 8 Si 1.86797 * 120.00144 * 180.02562 * 6 4 2
9 9 H 1.48505 * 109.47323 * 90.00115 * 8 6 4
10 10 H 1.48502 * 109.47423 * 210.00170 * 8 6 4
11 11 H 1.48497 * 109.47319 * 330.00232 * 8 6 4
12 12 N 1.46496 * 109.47257 * 119.99969 * 2 1 3
13 13 C 1.46501 * 120.00002 * 60.00182 * 12 2 1
14 14 C 1.34775 * 120.00256 * 239.99984 * 12 2 1
15 15 O 1.21596 * 119.99842 * 3.32353 * 14 12 2
16 16 C 1.47525 * 120.00053 * 183.32067 * 14 12 2
17 17 C 1.36603 * 125.76552 * 173.47491 * 16 14 12
18 18 N 1.34819 * 106.83529 * 179.97438 * 17 16 14
19 19 C 1.46497 * 126.59446 * 180.02562 * 18 17 16
20 20 C 1.50702 * 109.47063 * 125.00503 * 19 18 17
21 21 C 1.33387 * 125.20350 * 89.71918 * 20 19 18
22 22 C 1.38425 * 114.91932 * 179.85915 * 21 20 19
23 23 C 1.33386 * 114.91824 * 0.43020 * 22 21 20
24 24 S 1.75876 * 109.59652 * 359.77192 * 23 22 21
25 25 N 1.40207 * 106.80896 * 0.26735 * 18 17 16
26 26 N 1.28760 * 108.37105 * 359.54743 * 25 18 17
27 27 H 1.09004 * 109.47260 * 179.97438 * 1 2 3
28 28 H 1.08998 * 109.47179 * 300.00113 * 1 2 3
29 29 H 1.09006 * 109.47216 * 59.99843 * 1 2 3
30 30 H 0.96992 * 120.00227 * 180.02562 * 7 6 4
31 31 H 1.09004 * 109.47239 * 264.10703 * 13 12 2
32 32 H 1.08998 * 109.47208 * 24.10608 * 13 12 2
33 33 H 1.08997 * 109.47134 * 144.10799 * 13 12 2
34 34 H 1.07991 * 126.58438 * 359.97438 * 17 16 14
35 35 H 1.09000 * 109.47185 * 5.00159 * 19 18 17
36 36 H 1.09005 * 109.46943 * 245.00095 * 19 18 17
37 37 H 1.08002 * 122.54033 * 0.02562 * 21 20 19
38 38 H 1.08000 * 122.53592 * 180.19683 * 22 21 20
39 39 H 1.08003 * 125.19649 * 179.79353 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0323 -0.7103 -1.2305
5 1 2.6532 -1.5884 -1.1314
6 6 1.6992 -0.2393 -2.4827
7 7 0.9434 0.8303 -2.6034
8 14 2.3213 -1.1202 -4.0080
9 1 1.3427 -2.1616 -4.4119
10 1 2.4865 -0.1412 -5.1123
11 1 3.6292 -1.7582 -3.7123
12 7 2.0183 -0.6906 1.1961
13 6 1.6645 -2.0932 1.4280
14 6 2.7932 -0.0356 2.0833
15 8 3.0372 1.1447 1.9224
16 6 3.3453 -0.7507 3.2496
17 6 4.2395 -0.2418 4.1482
18 7 4.4813 -1.2133 5.0512
19 6 5.3782 -1.1282 6.2065
20 6 4.6172 -1.4763 7.4598
21 6 4.4910 -2.7036 7.9669
22 6 3.7464 -2.7798 9.1313
23 6 3.2606 -1.6157 9.5649
24 16 3.7535 -0.3276 8.4736
25 7 3.7137 -2.3225 4.6689
26 7 3.0531 -2.0126 3.6079
27 1 -0.3634 -1.0277 -0.0005
28 1 -0.3633 0.5138 0.8900
29 1 -0.3634 0.5139 -0.8900
30 1 0.7088 1.1614 -3.4843
31 1 0.7974 -2.1451 2.0864
32 1 1.4275 -2.5701 0.4769
33 1 2.5052 -2.6079 1.8930
34 1 4.6700 0.7485 4.1374
35 1 5.7695 -0.1142 6.2887
36 1 6.2045 -1.8272 6.0772
37 1 4.9382 -3.5716 7.5054
38 1 3.5691 -3.7118 9.6474
39 1 2.6571 -1.4843 10.4509
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000080027971.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:04:57
Heat of formation + Delta-G solvation = 94.019744 kcal
Electronic energy + Delta-G solvation = -23799.018709 eV
Core-core repulsion = 20256.818035 eV
Total energy + Delta-G solvation = -3542.200674 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 320.105 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-43.22359 -40.41849 -38.91065 -37.17018 -35.94107 -34.71953 -32.29385 -31.85916
-30.60891 -27.74277 -27.59790 -27.28856 -24.94472 -24.55002 -22.95810 -22.50192
-20.58125 -20.26805 -18.78210 -18.37390 -17.96662 -17.47625 -17.07890 -16.93636
-16.40793 -16.24759 -15.77037 -15.56896 -14.90891 -14.50761 -14.38368 -14.08785
-13.88677 -13.78341 -13.54521 -13.51148 -13.40489 -13.07883 -12.97759 -12.70583
-12.67013 -12.63909 -12.20583 -12.11556 -11.84600 -11.75218 -11.34580 -11.15865
-10.89884 -10.50120 -10.31858 -9.81768 -9.45264 -9.32466 -8.13117 -6.29368
-0.19569 0.17508 0.61737 0.71594 0.98869 1.16805 1.43472 1.44315
1.54862 1.87039 2.23131 2.38083 2.48052 3.14613 3.23376 3.31793
3.63743 3.78953 4.01431 4.18681 4.28057 4.32474 4.49982 4.58965
4.66393 4.70857 4.78325 4.80424 4.92524 5.07505 5.12423 5.23758
5.28561 5.41385 5.47558 5.49293 5.60497 5.68019 6.02590 6.16922
6.73377 6.76474 6.94797 7.26725 7.44585 8.91674
Molecular weight = 320.10amu
Principal moments of inertia in cm(-1)
A = 0.030196 B = 0.002624 C = 0.002589
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 927.037304 B =10667.024025 C =10812.244374
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.263 3.737
3 H 0.018 0.982
4 C -0.540 4.540
5 H 0.058 0.942
6 C 0.017 3.983
7 N -0.916 5.916
8 Si 0.966 3.034
9 H -0.269 1.269
10 H -0.282 1.282
11 H -0.272 1.272
12 N -0.585 5.585
13 C 0.089 3.911
14 C 0.580 3.420
15 O -0.591 6.591
16 C -0.114 4.114
17 C 0.108 3.892
18 N -0.347 5.347
19 C 0.190 3.810
20 C -0.229 4.229
21 C -0.096 4.096
22 C -0.151 4.151
23 C -0.200 4.200
24 S 0.094 5.906
25 N -0.074 5.074
26 N -0.219 5.219
27 H 0.042 0.958
28 H 0.019 0.981
29 H 0.072 0.928
30 H 0.266 0.734
31 H 0.053 0.947
32 H 0.067 0.933
33 H 0.093 0.907
34 H 0.233 0.767
35 H 0.146 0.854
36 H 0.141 0.859
37 H 0.154 0.846
38 H 0.162 0.838
39 H 0.185 0.815
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.518 -6.548 25.600 28.086
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C 0.161 3.839
3 H 0.036 0.964
4 C -0.578 4.578
5 H 0.076 0.924
6 C -0.182 4.182
7 N -0.555 5.555
8 Si 0.791 3.209
9 H -0.194 1.194
10 H -0.208 1.208
11 H -0.196 1.196
12 N -0.313 5.313
13 C -0.054 4.054
14 C 0.367 3.633
15 O -0.473 6.473
16 C -0.253 4.253
17 C -0.049 4.049
18 N -0.132 5.132
19 C 0.070 3.930
20 C -0.347 4.347
21 C -0.129 4.129
22 C -0.180 4.180
23 C -0.336 4.336
24 S 0.358 5.642
25 N -0.054 5.054
26 N -0.092 5.092
27 H 0.062 0.938
28 H 0.038 0.962
29 H 0.091 0.909
30 H 0.075 0.925
31 H 0.072 0.928
32 H 0.086 0.914
33 H 0.111 0.889
34 H 0.249 0.751
35 H 0.164 0.836
36 H 0.159 0.841
37 H 0.172 0.828
38 H 0.179 0.821
39 H 0.202 0.798
Dipole moment (debyes) X Y Z Total
from point charges 8.943 -5.710 25.704 27.808
hybrid contribution 0.405 -0.662 -1.053 1.308
sum 9.348 -6.372 24.652 27.124
Atomic orbital electron populations
1.21886 0.97135 1.00009 1.00063 1.18642 0.91701 0.92453 0.81086
0.96365 1.21543 1.32092 1.13090 0.91114 0.92353 1.25712 0.95022
0.95618 1.01880 1.70014 1.37187 1.23743 1.24519 0.85437 0.78795
0.78266 0.78401 1.19402 1.20794 1.19648 1.48087 1.47766 1.13411
1.22039 1.21970 1.01520 0.80630 1.01273 1.17348 0.78777 0.85572
0.81619 1.90705 1.62881 1.16508 1.77190 1.21367 1.07828 0.93551
1.02540 1.23702 0.95987 0.96954 0.88271 1.50784 1.32249 1.09590
1.20573 1.20777 0.88681 1.07885 0.75701 1.24386 1.09972 0.97736
1.02609 1.20490 0.99107 0.97321 0.95969 1.20498 1.00198 0.99803
0.97548 1.26059 1.06978 0.95566 1.05028 1.84498 1.48870 1.11745
1.19127 1.81859 1.06625 1.07846 1.09108 1.74761 1.16408 1.12109
1.05959 0.93842 0.96192 0.90897 0.92512 0.92841 0.91442 0.88936
0.75099 0.83605 0.84088 0.82824 0.82084 0.79750
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -6.76 8.97 71.98 0.65 -6.12 16
2 C 0.26 14.37 2.63 44.25 0.12 14.49 16
3 H 0.02 1.16 6.90 -2.39 -0.02 1.15 16
4 C -0.54 -30.50 7.95 25.60 0.20 -30.29 16
5 H 0.06 3.25 7.43 -2.91 -0.02 3.22 16
6 C 0.02 0.97 5.30 84.65 0.45 1.42 16
7 N -0.92 -53.46 11.32 21.45 0.24 -53.21 16
8 Si 0.97 43.95 29.54 68.60 2.03 45.97 16
9 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16
10 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16
11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16
12 N -0.58 -27.68 2.75 -830.57 -2.29 -29.96 16
13 C 0.09 3.55 8.52 127.77 1.09 4.64 16
14 C 0.58 26.30 7.67 86.69 0.66 26.97 16
15 O -0.59 -30.20 16.20 -4.02 -0.07 -30.27 16
16 C -0.11 -4.02 6.69 40.82 0.27 -3.74 16
17 C 0.11 2.71 11.28 83.85 0.95 3.66 16
18 N -0.35 -7.29 3.68 -350.83 -1.29 -8.58 16
19 C 0.19 2.14 7.03 85.63 0.60 2.74 16
20 C -0.23 -3.21 5.97 24.59 0.15 -3.06 16
21 C -0.10 -1.31 10.05 21.22 0.21 -1.10 16
22 C -0.15 -1.87 10.18 21.22 0.22 -1.66 16
23 C -0.20 -2.50 11.23 66.72 0.75 -1.75 16
24 S 0.09 1.36 23.33 -56.49 -1.32 0.04 16
25 N -0.07 -2.10 13.64 37.02 0.50 -1.59 16
26 N -0.22 -7.39 8.81 -49.99 -0.44 -7.83 16
27 H 0.04 2.05 7.67 -2.39 -0.02 2.03 16
28 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16
29 H 0.07 4.03 6.07 -2.38 -0.01 4.02 16
30 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16
31 H 0.05 1.97 8.14 -2.39 -0.02 1.96 16
32 H 0.07 2.75 7.12 -2.39 -0.02 2.73 16
33 H 0.09 3.47 5.31 -2.39 -0.01 3.45 16
34 H 0.23 4.23 8.06 -2.92 -0.02 4.21 16
35 H 0.15 0.75 8.08 -2.39 -0.02 0.73 16
36 H 0.14 0.94 8.14 -2.38 -0.02 0.92 16
37 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16
38 H 0.16 1.34 8.06 -2.91 -0.02 1.31 16
39 H 0.19 1.46 8.06 -2.91 -0.02 1.44 16
Total: -1.00 -74.71 347.61 4.77 -69.94
By element:
Atomic # 1 Polarization: 8.23 SS G_CDS: 1.08 Total: 9.31 kcal
Atomic # 6 Polarization: -0.13 SS G_CDS: 6.31 Total: 6.19 kcal
Atomic # 7 Polarization: -97.92 SS G_CDS: -3.27 Total: -101.19 kcal
Atomic # 8 Polarization: -30.20 SS G_CDS: -0.07 Total: -30.27 kcal
Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal
Atomic # 16 Polarization: 1.36 SS G_CDS: -1.32 Total: 0.04 kcal
Total: -74.71 4.77 -69.94 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000080027971.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 163.962 kcal
(2) G-P(sol) polarization free energy of solvation -74.708 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.254 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.766 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.942 kcal
(6) G-S(sol) free energy of system = (1) + (5) 94.020 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds