Wall clock time and date at job start Tue Mar 31 2020 13:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47732 * 2 1 4 4 N 1.46496 * 109.47516 * 179.97438 * 3 2 1 5 5 C 1.36945 * 119.99614 * 89.59668 * 4 3 2 6 6 H 1.07997 * 119.99552 * 33.66012 * 5 4 3 7 7 C 1.38803 * 119.99980 * 213.92830 * 5 4 3 8 8 N 1.31622 * 120.00126 * 23.01697 * 7 5 4 9 9 Si 1.86806 * 120.00059 * 203.01732 * 7 5 4 10 10 H 1.48505 * 109.46815 * 60.00134 * 9 7 5 11 11 H 1.48499 * 109.47221 * 179.97438 * 9 7 5 12 12 H 1.48489 * 109.47204 * 300.00340 * 9 7 5 13 13 C 1.46495 * 120.00498 * 269.60007 * 4 3 2 14 14 C 1.50694 * 109.47001 * 270.00211 * 13 4 3 15 15 N 1.30364 * 125.48384 * 89.69315 * 14 13 4 16 16 C 1.34145 * 108.90090 * 179.83203 * 15 14 13 17 17 C 1.35768 * 107.51565 * 0.42529 * 16 15 14 18 18 C 1.47829 * 126.58246 * 179.74784 * 17 16 15 19 19 C 1.39601 * 120.13806 * 180.02562 * 18 17 16 20 20 C 1.37938 * 119.87773 * 179.97438 * 19 18 17 21 21 C 1.38359 * 120.16382 * 359.97438 * 20 19 18 22 22 C 1.38452 * 120.27420 * 359.97438 * 21 20 19 23 23 Cl 1.73603 * 119.93711 * 180.02562 * 22 21 20 24 24 C 1.38104 * 120.12173 * 359.74174 * 22 21 20 25 25 O 1.33998 * 125.48067 * 269.99515 * 14 13 4 26 26 H 1.08996 * 109.47850 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46959 * 300.00185 * 1 2 3 28 28 H 1.09005 * 109.47206 * 59.99915 * 1 2 3 29 29 H 1.09004 * 109.46959 * 239.99815 * 2 1 3 30 30 H 1.09005 * 109.47206 * 120.00085 * 2 1 3 31 31 H 1.09004 * 109.47050 * 59.99870 * 3 2 1 32 32 H 1.09005 * 109.46844 * 300.00306 * 3 2 1 33 33 H 0.97003 * 119.99952 * 179.97438 * 8 7 5 34 34 H 1.09007 * 109.46736 * 29.99907 * 13 4 3 35 35 H 1.08997 * 109.47387 * 149.99808 * 13 4 3 36 36 H 1.08002 * 126.23743 * 180.20577 * 16 15 14 37 37 H 1.08002 * 120.06074 * 359.97438 * 19 18 17 38 38 H 1.08002 * 119.92007 * 180.02562 * 20 19 18 39 39 H 1.07999 * 119.86354 * 180.02562 * 21 20 19 40 40 H 1.07994 * 120.08177 * 180.25507 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1902 1.4338 -1.1851 6 1 3.7863 1.9461 -2.0458 7 6 5.4010 0.7621 -1.2822 8 7 5.6820 -0.2126 -0.4435 9 14 6.6318 1.2415 -2.6031 10 1 7.0233 2.6626 -2.4225 11 1 7.8358 0.3792 -2.4942 12 1 6.0149 1.0644 -3.9422 13 6 4.2371 1.4514 1.2695 14 6 4.4881 2.8752 1.6945 15 7 3.6920 3.5958 2.4337 16 6 4.2405 4.8073 2.6096 17 6 5.4200 4.8234 1.9376 18 6 6.3665 5.9553 1.8459 19 6 7.5475 5.8239 1.1133 20 6 8.4266 6.8837 1.0309 21 6 8.1402 8.0759 1.6719 22 6 6.9703 8.2138 2.3994 23 17 6.6194 9.7139 3.1996 24 6 6.0792 7.1621 2.4847 25 8 5.5629 3.6062 1.3686 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 6.5280 -0.6823 -0.5116 34 1 3.6477 0.9430 2.0326 35 1 5.1895 0.9366 1.1432 36 1 3.8187 5.6225 3.1789 37 1 7.7725 4.8941 0.6120 38 1 9.3403 6.7829 0.4640 39 1 8.8317 8.9027 1.6039 40 1 5.1649 7.2718 3.0489 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118004768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:50 Heat of formation + Delta-G solvation = 35.219979 kcal Electronic energy + Delta-G solvation = -23919.986238 eV Core-core repulsion = 20340.899357 eV Total energy + Delta-G solvation = -3579.086881 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.103 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.14719 -40.24456 -38.13274 -37.51642 -35.67950 -34.70367 -33.78672 -32.68625 -31.85694 -30.40582 -27.73768 -27.39500 -24.68556 -24.30416 -23.44370 -22.52466 -22.07959 -21.53236 -19.17620 -18.70990 -17.57566 -17.33846 -16.98336 -16.63475 -16.38870 -15.96188 -15.76881 -15.42866 -15.03120 -14.88271 -14.66011 -14.58299 -14.19864 -13.96884 -13.35734 -13.26119 -12.82436 -12.75265 -12.71524 -12.58296 -12.56410 -12.39444 -12.32205 -12.18496 -12.02626 -11.97145 -11.83817 -11.51602 -11.34756 -10.81394 -10.65189 -9.93357 -9.06246 -8.82813 -7.99470 -5.54713 -0.46200 0.07416 0.89249 0.97660 1.41840 1.45583 1.51664 1.73666 1.80796 2.44711 2.59558 3.06914 3.35225 3.52308 3.62726 3.76444 3.93233 3.98748 4.11834 4.22939 4.26901 4.42183 4.43564 4.60242 4.66875 4.71179 4.80927 4.86669 4.93960 4.95058 5.06919 5.13729 5.21701 5.26963 5.28348 5.39536 5.44858 5.46790 5.56018 5.61553 5.69853 6.32163 6.84718 6.98543 7.65673 8.17809 9.01018 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.014295 B = 0.003564 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.290314 B = 7854.577713 C = 9339.336024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.146 3.854 4 N -0.578 5.578 5 C -0.280 4.280 6 H 0.057 0.943 7 C -0.020 4.020 8 N -0.903 5.903 9 Si 0.950 3.050 10 H -0.285 1.285 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.224 3.776 14 C 0.204 3.796 15 N -0.513 5.513 16 C -0.018 4.018 17 C -0.053 4.053 18 C -0.005 4.005 19 C -0.119 4.119 20 C -0.095 4.095 21 C -0.100 4.100 22 C -0.034 4.034 23 Cl -0.055 7.055 24 C -0.094 4.094 25 O -0.209 6.209 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.037 0.963 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.041 0.959 33 H 0.259 0.741 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.214 0.786 37 H 0.116 0.884 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.527 15.004 6.166 16.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.021 3.979 4 N -0.298 5.298 5 C -0.410 4.410 6 H 0.074 0.926 7 C -0.219 4.219 8 N -0.546 5.546 9 Si 0.778 3.222 10 H -0.211 1.211 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.094 3.906 14 C -0.004 4.004 15 N -0.243 5.243 16 C -0.158 4.158 17 C -0.106 4.106 18 C -0.006 4.006 19 C -0.137 4.137 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.061 4.061 23 Cl -0.026 7.026 24 C -0.112 4.112 25 O -0.096 6.096 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.119 0.881 36 H 0.230 0.770 37 H 0.135 0.865 38 H 0.182 0.818 39 H 0.183 0.817 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.064 14.746 6.413 16.212 hybrid contribution 1.204 0.181 -0.925 1.529 sum 3.268 14.927 5.488 16.236 Atomic orbital electron populations 1.21661 0.94165 1.01871 1.01888 1.21868 0.96151 0.98311 1.00436 1.21115 0.82448 0.95161 0.99180 1.43982 1.01265 1.83338 1.01171 1.19208 1.04068 1.27255 0.90438 0.92551 1.25651 1.01448 0.94706 1.00064 1.69999 1.24040 1.20124 1.40393 0.85618 0.79079 0.77658 0.79888 1.21107 1.20988 1.19822 1.19625 1.01232 0.81977 0.87750 1.29087 0.80223 0.98837 0.92246 1.70396 1.30580 1.04444 1.18876 1.23786 0.92801 0.96603 1.02622 1.21758 0.99882 0.86103 1.02855 1.17579 0.93105 0.89791 1.00165 1.21521 0.93744 1.00372 0.98063 1.21336 0.99937 0.91275 0.98696 1.21501 0.95716 0.99056 0.95566 1.20772 0.96866 0.88361 1.00068 1.98380 1.94918 1.30867 1.78444 1.20953 1.00518 0.89933 0.99844 1.84547 1.43396 1.22347 1.59312 0.92121 0.92146 0.92630 0.94375 0.93753 0.93078 0.94069 0.93184 0.89761 0.88110 0.76975 0.86542 0.81817 0.81678 0.83017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.91 71.98 0.71 -3.27 16 2 C -0.13 -4.90 6.26 30.59 0.19 -4.71 16 3 C 0.15 6.15 5.67 86.38 0.49 6.64 16 4 N -0.58 -28.59 2.44 -706.36 -1.72 -30.31 16 5 C -0.28 -15.12 9.48 84.03 0.80 -14.33 16 6 H 0.06 3.08 7.93 -2.91 -0.02 3.06 16 7 C -0.02 -1.06 4.95 84.86 0.42 -0.64 16 8 N -0.90 -49.89 11.31 21.65 0.24 -49.64 16 9 Si 0.95 43.56 29.61 68.60 2.03 45.59 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 C 0.22 10.67 5.91 85.63 0.51 11.18 16 14 C 0.20 9.26 7.91 88.32 0.70 9.96 16 15 N -0.51 -21.28 11.27 -302.86 -3.41 -24.69 16 16 C -0.02 -0.63 11.29 83.77 0.95 0.32 16 17 C -0.05 -1.95 7.07 24.24 0.17 -1.78 16 18 C -0.01 -0.16 5.87 -20.10 -0.12 -0.28 16 19 C -0.12 -3.32 9.73 22.53 0.22 -3.10 16 20 C -0.09 -1.89 10.03 22.23 0.22 -1.66 16 21 C -0.10 -1.75 9.82 22.35 0.22 -1.53 16 22 C -0.03 -0.68 6.31 22.29 0.14 -0.54 16 23 Cl -0.06 -0.95 28.95 -2.72 -0.08 -1.03 16 24 C -0.09 -2.19 9.35 22.55 0.21 -1.98 16 25 O -0.21 -9.49 10.59 -7.81 -0.08 -9.57 16 26 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.05 1.51 8.14 -2.38 -0.02 1.50 16 29 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.05 2.06 8.07 -2.38 -0.02 2.04 16 32 H 0.04 1.73 8.04 -2.38 -0.02 1.71 16 33 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 34 H 0.08 3.75 8.07 -2.38 -0.02 3.73 16 35 H 0.10 5.35 5.31 -2.39 -0.01 5.33 16 36 H 0.21 5.38 7.30 -2.91 -0.02 5.35 16 37 H 0.12 3.66 7.95 -2.91 -0.02 3.64 16 38 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 39 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 40 H 0.15 2.99 7.04 -2.91 -0.02 2.97 16 Total: -1.00 -62.21 359.93 3.86 -58.35 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 1.05 Total: 17.02 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: 5.83 Total: -5.72 kcal Atomic # 7 Polarization: -99.75 SS G_CDS: -4.89 Total: -104.64 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.08 Total: -9.57 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.08 Total: -1.03 kcal Total: -62.21 3.86 -58.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118004768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.575 kcal (2) G-P(sol) polarization free energy of solvation -62.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds